RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 GPR135Q8IZ08 494 aa13.41□□□□□ -0.26
SNX1-214ENST00000625244 SPATA3Q8NHX4 192 aa13.41□□□□□ -0.26
SNX1-214ENST00000625244 PROKR1Q8TCW9 393 aa13.41□□□□□ -0.26
SNX1-214ENST00000625244 TEKT4Q8WW24 435 aa13.41□□□□□ -0.26
SNX1-214ENST00000625244 NACC2Q96BF6 587 aa13.41□□□□□ -0.26
SNX1-214ENST00000625244 ZNF653Q96CK0 615 aa13.41□□□□□ -0.26
SNX1-214ENST00000625244 NRTNQ99748 197 aa13.41□□□□□ -0.26
SNX1-214ENST00000625244 SMR3AQ99954 134 aa13.41□□□□□ -0.26
SNX1-214ENST00000625244 AP1M1Q9BXS5 423 aa13.41□□□□□ -0.26
SNX1-214ENST00000625244 KIR3DX1Q9H7L2 352 aa13.41□□□□□ -0.26
SNX1-214ENST00000625244 ZFYVE1Q9HBF4 777 aa13.41□□□□□ -0.26
SNX1-214ENST00000625244 MEMO1Q9Y316 297 aa13.41□□□□□ -0.26
SNX1-214ENST00000625244 NUP210LQ5VU65 1888 aa13.41□□□□□ -0.26
SNX1-214ENST00000625244 TRAV17A0A0B4J275 112 aa13.4□□□□□ -0.26
SNX1-214ENST00000625244 SYCE3A1L190 88 aa13.4□□□□□ -0.26
SNX1-214ENST00000625244 GSAPA4D1B5 854 aa13.4□□□□□ -0.26
SNX1-214ENST00000625244 HCRTR1O43613 425 aa13.4□□□□□ -0.26
SNX1-214ENST00000625244 PRPSAP2O60256 369 aa13.4□□□□□ -0.26
SNX1-214ENST00000625244 KCNJ13O60928 360 aa13.4□□□□□ -0.26
SNX1-214ENST00000625244 OR2B3O76000 313 aa13.4□□□□□ -0.26
SNX1-214ENST00000625244 SLC4A1P02730 911 aa13.4□□□□□ -0.26
SNX1-214ENST00000625244 TPM2P07951 284 aa13.4□□□□□ -0.26
SNX1-214ENST00000625244 PSMA2P25787 234 aa13.4□□□□□ -0.26
SNX1-214ENST00000625244 MIPP30301 263 aa13.4□□□□□ -0.26
SNX1-214ENST00000625244 TMEM200AQ86VY9 491 aa13.4□□□□□ -0.26
SNX1-214ENST00000625244 ANKRD20A12PQ8NF67 263 aa13.4□□□□□ -0.26
SNX1-214ENST00000625244 SPDYE1Q8NFV5 336 aaPredicted RBP13.4□□□□□ -0.26
SNX1-214ENST00000625244 CPLX3Q8WVH0 158 aa13.4□□□□□ -0.26
SNX1-214ENST00000625244 ZFPM2Q8WW38 1151 aa13.4□□□□□ -0.26
SNX1-214ENST00000625244 C12orf66Q96MD2 445 aa13.4□□□□□ -0.26
SNX1-214ENST00000625244 PITPNM3Q9BZ71 974 aa13.4□□□□□ -0.26
SNX1-214ENST00000625244 WWP1Q9H0M0 922 aa13.4□□□□□ -0.26
SNX1-214ENST00000625244 ZWILCHQ9H900 591 aa13.4□□□□□ -0.26
SNX1-214ENST00000625244 FAM60AQ9NP50 221 aa13.4□□□□□ -0.26
SNX1-214ENST00000625244 NFKBIL1Q9UBC1 381 aaPredicted RBP13.4□□□□□ -0.26
SNX1-214ENST00000625244 SHOC2Q9UQ13 582 aa13.4□□□□□ -0.26
SNX1-214ENST00000625244 TTLL3Q9Y4R7 772 aa13.4□□□□□ -0.26
SNX1-214ENST00000625244 AP1M2Q9Y6Q5 423 aa13.4□□□□□ -0.26
SNX1-214ENST00000625244 DYTNA2CJ06 578 aa13.39□□□□□ -0.27
SNX1-214ENST00000625244 MAP3K7O43318 606 aa13.39□□□□□ -0.27
SNX1-214ENST00000625244 F10P00742 488 aa13.39□□□□□ -0.27
SNX1-214ENST00000625244 CRYABP02511 175 aaKnown RBP13.39□□□□□ -0.27
SNX1-214ENST00000625244 PIRTP0C851 137 aa13.39□□□□□ -0.27
SNX1-214ENST00000625244 DESP17661 470 aa13.39□□□□□ -0.27
SNX1-214ENST00000625244 CA4P22748 312 aa13.39□□□□□ -0.27
SNX1-214ENST00000625244 ZNF135P52742 658 aaPredicted RBP13.39□□□□□ -0.27
SNX1-214ENST00000625244 CTSCP53634 463 aa13.39□□□□□ -0.27
SNX1-214ENST00000625244 GTF2H3Q13889 308 aa13.39□□□□□ -0.27
SNX1-214ENST00000625244 DEFB110Q30KQ9 67 aa13.39□□□□□ -0.27
SNX1-214ENST00000625244 METRNLQ641Q3 311 aa13.39□□□□□ -0.27
SNX1-214ENST00000625244 TMC3Q7Z5M5 1100 aa13.39□□□□□ -0.27
SNX1-214ENST00000625244 DNAJB8Q8NHS0 232 aa13.39□□□□□ -0.27
SNX1-214ENST00000625244 MESP1Q9BRJ9 268 aa13.39□□□□□ -0.27
SNX1-214ENST00000625244 GPAMQ9HCL2 828 aa13.39□□□□□ -0.27
SNX1-214ENST00000625244 MXRA5Q9NR99 2828 aa13.39□□□□□ -0.27
SNX1-214ENST00000625244 SMTNL1A8MU46 457 aa13.38□□□□□ -0.27
SNX1-214ENST00000625244 H3BRJ5 948 aa13.38□□□□□ -0.27
SNX1-214ENST00000625244 BTN3A3O00478 584 aa13.38□□□□□ -0.27
SNX1-214ENST00000625244 RASAL1O95294 804 aa13.38□□□□□ -0.27
SNX1-214ENST00000625244 PRKCSHP14314 528 aaPredicted RBP13.38□□□□□ -0.27
SNX1-214ENST00000625244 IGFBP2P18065 325 aa13.38□□□□□ -0.27
SNX1-214ENST00000625244 CES1P23141 567 aa13.38□□□□□ -0.27
SNX1-214ENST00000625244 PBLDP30039 288 aaPredicted RBP13.38□□□□□ -0.27
SNX1-214ENST00000625244 SOX5P35711 763 aa13.38□□□□□ -0.27
SNX1-214ENST00000625244 TPM4P67936 248 aa13.38□□□□□ -0.27
SNX1-214ENST00000625244 PMP22Q01453 160 aa13.38□□□□□ -0.27
SNX1-214ENST00000625244 MYL5Q02045 173 aa13.38□□□□□ -0.27
SNX1-214ENST00000625244 TUBB8Q3ZCM7 444 aa13.38□□□□□ -0.27
SNX1-214ENST00000625244 ATP13A5Q4VNC0 1218 aa13.38□□□□□ -0.27
SNX1-214ENST00000625244 TMEM198Q66K66 360 aa13.38□□□□□ -0.27
SNX1-214ENST00000625244 CXXC5Q7LFL8 322 aaKnown RBP13.38□□□□□ -0.27
SNX1-214ENST00000625244 POLNQ7Z5Q5 900 aa13.38□□□□□ -0.27
SNX1-214ENST00000625244 PSTKQ8IV42 348 aaKnown RBP13.38□□□□□ -0.27
SNX1-214ENST00000625244 FAM20CQ8IXL6 584 aa13.38□□□□□ -0.27
SNX1-214ENST00000625244 ZNF655Q8N720 491 aaPredicted RBP13.38□□□□□ -0.27
SNX1-214ENST00000625244 RASGEF1AQ8N9B8 481 aa13.38□□□□□ -0.27
SNX1-214ENST00000625244 OR11G2Q8NGC1 345 aa13.38□□□□□ -0.27
SNX1-214ENST00000625244 GDAP1Q8TB36 358 aa13.38□□□□□ -0.27
SNX1-214ENST00000625244 ENOX1Q8TC92 643 aaKnown RBP13.38□□□□□ -0.27
SNX1-214ENST00000625244 N4BP2L2Q92802 583 aaPredicted RBP13.38□□□□□ -0.27
SNX1-214ENST00000625244 CSPG4P5Q96PW8 444 aa13.38□□□□□ -0.27
SNX1-214ENST00000625244 VPS35Q96QK1 796 aa13.38□□□□□ -0.27
SNX1-214ENST00000625244 DEF6Q9H4E7 631 aa13.38□□□□□ -0.27
SNX1-214ENST00000625244 RBM22Q9NW64 420 aaKnown RBP eCLIP13.38□□□□□ -0.27
SNX1-214ENST00000625244 ZNF835Q9Y2P0 537 aa13.38□□□□□ -0.27
SNX1-214ENST00000625244 HRNRQ86YZ3 2850 aaPredicted RBP13.38□□□□□ -0.27
SNX1-214ENST00000625244 INTS1Q8N201 2190 aaKnown RBP13.37□□□□□ -0.27
SNX1-214ENST00000625244 C17orf113A0A1B0GUU1 675 aa13.37□□□□□ -0.27
SNX1-214ENST00000625244 MATN2O00339 956 aa13.37□□□□□ -0.27
SNX1-214ENST00000625244 BTN3A1O00481 513 aa13.37□□□□□ -0.27
SNX1-214ENST00000625244 MMP2P08253 660 aa13.37□□□□□ -0.27
SNX1-214ENST00000625244 ITGAXP20702 1163 aa13.37□□□□□ -0.27
SNX1-214ENST00000625244 TMPRSS15P98073 1019 aa13.37□□□□□ -0.27
SNX1-214ENST00000625244 CEBPEQ15744 281 aa13.37□□□□□ -0.27
SNX1-214ENST00000625244 TMEM220Q6QAJ8 160 aa13.37□□□□□ -0.27
SNX1-214ENST00000625244 Q6ZPB1 254 aaPredicted RBP13.37□□□□□ -0.27
SNX1-214ENST00000625244 SHISA6Q6ZSJ9 500 aa13.37□□□□□ -0.27
SNX1-214ENST00000625244 BIVMQ86UB2 503 aa13.37□□□□□ -0.27
SNX1-214ENST00000625244 CA5BP1Q8WTZ4 195 aa13.37□□□□□ -0.27
SNX1-214ENST00000625244 MAML1Q92585 1016 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms