RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 IGHV5-10-1A0A0J9YXX1 117 aa13.15□□□□□ -0.3
LINC00540-202ENST00000616974 C17orf113A0A1B0GUU1 675 aa13.15□□□□□ -0.3
LINC00540-202ENST00000616974 ZNF500O60304 480 aaPredicted RBP13.15□□□□□ -0.3
LINC00540-202ENST00000616974 RPS3P23396 243 aaKnown RBP eCLIP13.15□□□□□ -0.3
LINC00540-202ENST00000616974 ETV5P41161 510 aa13.15□□□□□ -0.3
LINC00540-202ENST00000616974 PPM1FP49593 454 aaPredicted RBP13.15□□□□□ -0.3
LINC00540-202ENST00000616974 CLCN7P51798 805 aa13.15□□□□□ -0.3
LINC00540-202ENST00000616974 SHC2P98077 582 aa13.15□□□□□ -0.3
LINC00540-202ENST00000616974 ABRQ12979 859 aa13.15□□□□□ -0.3
LINC00540-202ENST00000616974 ZNF460Q14592 562 aa13.15□□□□□ -0.3
LINC00540-202ENST00000616974 MAP9Q49MG5 647 aa13.15□□□□□ -0.3
LINC00540-202ENST00000616974 ACSBG2Q5FVE4 666 aa13.15□□□□□ -0.3
LINC00540-202ENST00000616974 C3orf38Q5JPI3 329 aa13.15□□□□□ -0.3
LINC00540-202ENST00000616974 RBM44Q6ZP01 1051 aaKnown RBP13.15□□□□□ -0.3
LINC00540-202ENST00000616974 PDZD3Q86UT5 571 aa13.15□□□□□ -0.3
LINC00540-202ENST00000616974 TMPRSS12Q86WS5 348 aa13.15□□□□□ -0.3
LINC00540-202ENST00000616974 HEXDCQ8WVB3 486 aa13.15□□□□□ -0.3
LINC00540-202ENST00000616974 TFGQ92734 400 aaPredicted RBP13.15□□□□□ -0.3
LINC00540-202ENST00000616974 SLC24A2Q9UI40 661 aa13.15□□□□□ -0.3
LINC00540-202ENST00000616974 MSRB2Q9Y3D2 182 aa13.15□□□□□ -0.3
LINC00540-202ENST00000616974 TCRBV9S1A1TA0A576 114 aa13.14□□□□□ -0.31
LINC00540-202ENST00000616974 PRAMEF10O60809 474 aa13.14□□□□□ -0.31
LINC00540-202ENST00000616974 FAM153BP0C7A2 387 aa13.14□□□□□ -0.31
LINC00540-202ENST00000616974 CCL4P13236 92 aa13.14□□□□□ -0.31
LINC00540-202ENST00000616974 PKMP14618 531 aaKnown RBP13.14□□□□□ -0.31
LINC00540-202ENST00000616974 CHRM3P20309 590 aa13.14□□□□□ -0.31
LINC00540-202ENST00000616974 FAM153CQ494X1 144 aa13.14□□□□□ -0.31
LINC00540-202ENST00000616974 LYPLAL1Q5VWZ2 237 aa13.14□□□□□ -0.31
LINC00540-202ENST00000616974 SDCCAG8Q86SQ7 713 aaPredicted RBP13.14□□□□□ -0.31
LINC00540-202ENST00000616974 CNTN4Q8IWV2 1026 aa13.14□□□□□ -0.31
LINC00540-202ENST00000616974 FAM20CQ8IXL6 584 aa13.14□□□□□ -0.31
LINC00540-202ENST00000616974 C2orf73Q8N5S3 287 aaPredicted RBP13.14□□□□□ -0.31
LINC00540-202ENST00000616974 PYROXD1Q8WU10 500 aa13.14□□□□□ -0.31
LINC00540-202ENST00000616974 CNTNAP3BQ96NU0 1288 aa13.14□□□□□ -0.31
LINC00540-202ENST00000616974 IL17FQ96PD4 163 aa13.14□□□□□ -0.31
LINC00540-202ENST00000616974 GPR21Q99679 349 aa13.14□□□□□ -0.31
LINC00540-202ENST00000616974 OLFM1Q99784 485 aa13.14□□□□□ -0.31
LINC00540-202ENST00000616974 CNTNAP3Q9BZ76 1288 aa13.14□□□□□ -0.31
LINC00540-202ENST00000616974 POT1Q9NUX5 634 aa13.14□□□□□ -0.31
LINC00540-202ENST00000616974 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.14□□□□□ -0.31
LINC00540-202ENST00000616974 GNPTGQ9UJJ9 305 aa13.14□□□□□ -0.31
LINC00540-202ENST00000616974 ACSL5Q9ULC5 683 aa13.14□□□□□ -0.31
LINC00540-202ENST00000616974 NFU1Q9UMS0 254 aa13.14□□□□□ -0.31
LINC00540-202ENST00000616974 SATB2Q9UPW6 733 aa13.14□□□□□ -0.31
LINC00540-202ENST00000616974 V9GYY5 206 aaPredicted RBP13.14□□□□□ -0.31
LINC00540-202ENST00000616974 FAM221BA6H8Z2 402 aa13.13□□□□□ -0.31
LINC00540-202ENST00000616974 UBXN7O94888 489 aa13.13□□□□□ -0.31
LINC00540-202ENST00000616974 CPNE6O95741 557 aa13.13□□□□□ -0.31
LINC00540-202ENST00000616974 FTH1P02794 183 aa13.13□□□□□ -0.31
LINC00540-202ENST00000616974 TUBB4AP04350 444 aa13.13□□□□□ -0.31
LINC00540-202ENST00000616974 PNLIPP16233 465 aa13.13□□□□□ -0.31
LINC00540-202ENST00000616974 MAGEA4P43358 317 aa13.13□□□□□ -0.31
LINC00540-202ENST00000616974 BDKRB1P46663 353 aa13.13□□□□□ -0.31
LINC00540-202ENST00000616974 ZFP36L1Q07352 338 aaKnown RBP13.13□□□□□ -0.31
LINC00540-202ENST00000616974 CYP4F3Q08477 520 aa13.13□□□□□ -0.31
LINC00540-202ENST00000616974 GRB7Q14451 532 aa13.13□□□□□ -0.31
LINC00540-202ENST00000616974 KYNUQ16719 465 aa13.13□□□□□ -0.31
LINC00540-202ENST00000616974 SYTL3Q4VX76 610 aa13.13□□□□□ -0.31
LINC00540-202ENST00000616974 PHF19Q5T6S3 580 aa13.13□□□□□ -0.31
LINC00540-202ENST00000616974 FAM92BQ6ZTR7 304 aa13.13□□□□□ -0.31
LINC00540-202ENST00000616974 OR4E2Q8NGC2 313 aa13.13□□□□□ -0.31
LINC00540-202ENST00000616974 OR52E1Q8NGJ3 308 aa13.13□□□□□ -0.31
LINC00540-202ENST00000616974 CD200R1Q8TD46 325 aa13.13□□□□□ -0.31
LINC00540-202ENST00000616974 PRR11Q96HE9 360 aaPredicted RBP13.13□□□□□ -0.31
LINC00540-202ENST00000616974 CCDC74BQ96LY2 380 aa13.13□□□□□ -0.31
LINC00540-202ENST00000616974 FERD3LQ96RJ6 166 aa13.13□□□□□ -0.31
LINC00540-202ENST00000616974 IKZF3Q9UKT9 509 aa13.13□□□□□ -0.31
LINC00540-202ENST00000616974 BTN3A3O00478 584 aa13.13□□□□□ -0.31
LINC00540-202ENST00000616974 TTC4O95801 387 aa13.13□□□□□ -0.31
LINC00540-202ENST00000616974 CAPNS1P04632 268 aa13.13□□□□□ -0.31
LINC00540-202ENST00000616974 HALP42357 657 aa13.13□□□□□ -0.31
LINC00540-202ENST00000616974 GPR3P46089 330 aa13.13□□□□□ -0.31
LINC00540-202ENST00000616974 YBX1P67809 324 aaKnown RBP13.13□□□□□ -0.31
LINC00540-202ENST00000616974 E2F1Q01094 437 aa13.13□□□□□ -0.31
LINC00540-202ENST00000616974 TMEM207Q6UWW9 146 aa13.13□□□□□ -0.31
LINC00540-202ENST00000616974 OTOAQ7RTW8 1153 aa13.13□□□□□ -0.31
LINC00540-202ENST00000616974 SLC22A15Q8IZD6 547 aa13.13□□□□□ -0.31
LINC00540-202ENST00000616974 MNS1Q8NEH6 495 aa13.13□□□□□ -0.31
LINC00540-202ENST00000616974 OR10G6Q8NH81 332 aa13.13□□□□□ -0.31
LINC00540-202ENST00000616974 UHMK1Q8TAS1 419 aaKnown RBP13.13□□□□□ -0.31
LINC00540-202ENST00000616974 GSDMBQ8TAX9 411 aa13.13□□□□□ -0.31
LINC00540-202ENST00000616974 LRRC39Q96DD0 335 aa13.13□□□□□ -0.31
LINC00540-202ENST00000616974 MRRFQ96E11 262 aaKnown RBP13.13□□□□□ -0.31
LINC00540-202ENST00000616974 TGM7Q96PF1 710 aa13.13□□□□□ -0.31
LINC00540-202ENST00000616974 UNKQ9C0B0 810 aaKnown RBP13.13□□□□□ -0.31
LINC00540-202ENST00000616974 KLHL25Q9H0H3 589 aa13.13□□□□□ -0.31
LINC00540-202ENST00000616974 ASF1AQ9Y294 204 aa13.13□□□□□ -0.31
LINC00540-202ENST00000616974 TDRKHQ9Y2W6 561 aaKnown RBP13.13□□□□□ -0.31
LINC00540-202ENST00000616974 NEUROG3Q9Y4Z2 214 aa13.13□□□□□ -0.31
LINC00540-202ENST00000616974 OR5K4A6NMS3 321 aa13.12□□□□□ -0.31
LINC00540-202ENST00000616974 TAF4O00268 1085 aa13.12□□□□□ -0.31
LINC00540-202ENST00000616974 LIN7AO14910 233 aaPredicted RBP13.12□□□□□ -0.31
LINC00540-202ENST00000616974 CAPN5O15484 640 aaPredicted RBP13.12□□□□□ -0.31
LINC00540-202ENST00000616974 SLCO2B1O94956 709 aa13.12□□□□□ -0.31
LINC00540-202ENST00000616974 LSSP48449 732 aa13.12□□□□□ -0.31
LINC00540-202ENST00000616974 GBX1Q14549 363 aa13.12□□□□□ -0.31
LINC00540-202ENST00000616974 PLCL1Q15111 1095 aa13.12□□□□□ -0.31
LINC00540-202ENST00000616974 DNTTIP2Q5QJE6 756 aaKnown RBP13.12□□□□□ -0.31
LINC00540-202ENST00000616974 TEX35Q5T0J7 233 aa13.12□□□□□ -0.31
LINC00540-202ENST00000616974 C3orf62Q6ZUJ4 267 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms