RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 MTTPP55157 894 aa13.79□□□□□ -0.2
CPSF1-212ENST00000616140 SRSF11Q05519 484 aaKnown RBP13.79□□□□□ -0.2
CPSF1-212ENST00000616140 CCL14Q16627 93 aa13.79□□□□□ -0.2
CPSF1-212ENST00000616140 NDUFA5Q16718 116 aa13.79□□□□□ -0.2
CPSF1-212ENST00000616140 SIRPB2Q5JXA9 342 aa13.79□□□□□ -0.2
CPSF1-212ENST00000616140 TAS1R3Q7RTX0 852 aa13.79□□□□□ -0.2
CPSF1-212ENST00000616140 NPAS4Q8IUM7 802 aa13.79□□□□□ -0.2
CPSF1-212ENST00000616140 RAB2BQ8WUD1 216 aa13.79□□□□□ -0.2
CPSF1-212ENST00000616140 PKP2Q99959 881 aa13.79□□□□□ -0.2
CPSF1-212ENST00000616140 KCPQ6ZWJ8 1503 aa13.79□□□□□ -0.2
CPSF1-212ENST00000616140 LTN1O94822 1766 aa13.79□□□□□ -0.2
CPSF1-212ENST00000616140 ARPC2O15144 300 aa13.79□□□□□ -0.2
CPSF1-212ENST00000616140 NDUFS2O75306 463 aa13.79□□□□□ -0.2
CPSF1-212ENST00000616140 RFPL1O75677 317 aa13.79□□□□□ -0.2
CPSF1-212ENST00000616140 CCNKO75909 580 aa13.79□□□□□ -0.2
CPSF1-212ENST00000616140 EPHX1P07099 455 aa13.79□□□□□ -0.2
CPSF1-212ENST00000616140 IL18R1Q13478 541 aa13.79□□□□□ -0.2
CPSF1-212ENST00000616140 DAG1Q14118 895 aa13.79□□□□□ -0.2
CPSF1-212ENST00000616140 TCEAL1Q15170 157 aa13.79□□□□□ -0.2
CPSF1-212ENST00000616140 TMEM220Q6QAJ8 160 aa13.79□□□□□ -0.2
CPSF1-212ENST00000616140 AKAP14Q86UN6 197 aa13.79□□□□□ -0.2
CPSF1-212ENST00000616140 CD320Q9NPF0 282 aa13.79□□□□□ -0.2
CPSF1-212ENST00000616140 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.79□□□□□ -0.2
CPSF1-212ENST00000616140 NKIRAS2Q9NYR9 191 aa13.79□□□□□ -0.2
CPSF1-212ENST00000616140 TLL2Q9Y6L7 1015 aa13.79□□□□□ -0.2
CPSF1-212ENST00000616140 TLL1O43897 1013 aa13.79□□□□□ -0.2
CPSF1-212ENST00000616140 PRKAR1AP10644 381 aa13.79□□□□□ -0.2
CPSF1-212ENST00000616140 GSK3BP49841 420 aa13.79□□□□□ -0.2
CPSF1-212ENST00000616140 CDHR3Q6ZTQ4 885 aa13.79□□□□□ -0.2
CPSF1-212ENST00000616140 AHI1Q8N157 1196 aa13.79□□□□□ -0.2
CPSF1-212ENST00000616140 PLD6Q8N2A8 252 aaKnown RBP13.79□□□□□ -0.2
CPSF1-212ENST00000616140 CLDN19Q8N6F1 224 aa13.79□□□□□ -0.2
CPSF1-212ENST00000616140 DIRAS2Q96HU8 199 aa13.79□□□□□ -0.2
CPSF1-212ENST00000616140 CGREF1Q99674 301 aa13.79□□□□□ -0.2
CPSF1-212ENST00000616140 COPS4Q9BT78 406 aa13.79□□□□□ -0.2
CPSF1-212ENST00000616140 C1orf21Q9H246 121 aa13.79□□□□□ -0.2
CPSF1-212ENST00000616140 ZNF222Q9UK12 451 aa13.79□□□□□ -0.2
CPSF1-212ENST00000616140 STON1Q9Y6Q2 735 aa13.79□□□□□ -0.2
CPSF1-212ENST00000616140 FAM208AQ9UK61 1670 aaKnown RBP13.78□□□□□ -0.2
CPSF1-212ENST00000616140 FAM86C2PA6NEL3 165 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 CDC7O00311 574 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 MATN2O00339 956 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 ECT2LQ008S8 904 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 MXD1Q05195 221 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 GALNT2Q10471 571 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 HSPB3Q12988 150 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 SH3D19Q5HYK7 790 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 C1orf220Q5T0J3 134 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 EPGNQ6UW88 154 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 SMOQ99835 787 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 PTPN18Q99952 460 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 KAT8Q9H7Z6 458 aaKnown RBP13.78□□□□□ -0.2
CPSF1-212ENST00000616140 FBRSL1Q9HCM7 1045 aaKnown RBP13.78□□□□□ -0.2
CPSF1-212ENST00000616140 MCUBQ9NWR8 336 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 GDAP2Q9NXN4 497 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 OAS3Q9Y6K5 1087 aaKnown RBP13.78□□□□□ -0.2
CPSF1-212ENST00000616140 FMN2Q9NZ56 1722 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 ABHD14A-ACY1A0A1B0GW23 586 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 GTPBP1O00178 669 aaKnown RBP13.78□□□□□ -0.2
CPSF1-212ENST00000616140 SCN2BO60939 215 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 PGLSO95336 258 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 RHDQ02161 417 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 TEAD4Q15561 434 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 TIFABQ6ZNK6 161 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 OTOP2Q7RTS6 562 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 CYP2U1Q7Z449 544 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 ADGRG2Q8IZP9 1017 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 SLC38A4Q969I6 547 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 S100A13Q99584 98 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 HEPHQ9BQS7 1158 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 TTLL2Q9BWV7 592 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 MAP10Q9P2G4 905 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 KCTD3Q9Y597 815 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 HS3ST4Q9Y661 456 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 PRNPP04156 253 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 C8GP07360 202 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 KCNQ1P51787 676 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 CASP9P55211 416 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 EEFSECP57772 596 aaKnown RBP13.78□□□□□ -0.2
CPSF1-212ENST00000616140 ADGRF1Q5T601 910 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 DUSP26Q9BV47 211 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 TRIM8Q9BZR9 551 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 ADAM7Q9H2U9 754 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 CCSER2Q9H7U1 834 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 RPRD1BQ9NQG5 326 aaKnown RBP13.78□□□□□ -0.2
CPSF1-212ENST00000616140 EURLQ9NYK6 297 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 TRPS1Q9UHF7 1281 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 CLEC4AQ9UMR7 237 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 UBE2QL1A1L167 161 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 SNX4O95219 450 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 ECHS1P30084 290 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 PCDH1Q08174 1060 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 LGALS3BPQ08380 585 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 PDE12Q6L8Q7 609 aaKnown RBP13.78□□□□□ -0.2
CPSF1-212ENST00000616140 RNF19BQ6ZMZ0 732 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 PLD4Q96BZ4 506 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 ZBTB26Q9HCK0 441 aa13.78□□□□□ -0.2
CPSF1-212ENST00000616140 MRPS33Q9Y291 106 aaKnown RBP13.78□□□□□ -0.2
CPSF1-212ENST00000616140 RBMX2Q9Y388 322 aaKnown RBP13.78□□□□□ -0.2
CPSF1-212ENST00000616140 PRKD3O94806 890 aa13.77□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms