RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 ZBTB26Q9HCK0 441 aa13.95□□□□□ -0.18
USP39-220ENST00000613444 PCTPQ9UKL6 214 aa13.95□□□□□ -0.18
USP39-220ENST00000613444 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.95□□□□□ -0.18
USP39-220ENST00000613444 PRR19A6NJB7 356 aa13.95□□□□□ -0.18
USP39-220ENST00000613444 FPGTO14772 594 aa13.95□□□□□ -0.18
USP39-220ENST00000613444 KMOO15229 486 aa13.95□□□□□ -0.18
USP39-220ENST00000613444 SNX2O60749 519 aa13.95□□□□□ -0.18
USP39-220ENST00000613444 TSPAN8P19075 237 aa13.95□□□□□ -0.18
USP39-220ENST00000613444 CDKL1Q00532 357 aa13.95□□□□□ -0.18
USP39-220ENST00000613444 ABRQ12979 859 aa13.95□□□□□ -0.18
USP39-220ENST00000613444 CDKL4Q5MAI5 379 aa13.95□□□□□ -0.18
USP39-220ENST00000613444 SKA2Q8WVK7 121 aaPredicted RBP13.95□□□□□ -0.18
USP39-220ENST00000613444 NECAB3Q96P71 396 aaPredicted RBP13.95□□□□□ -0.18
USP39-220ENST00000613444 TMEM79Q9BSE2 394 aa13.95□□□□□ -0.18
USP39-220ENST00000613444 OR52A5Q9H2C5 316 aa13.95□□□□□ -0.18
USP39-220ENST00000613444 DPEP2Q9H4A9 486 aa13.95□□□□□ -0.18
USP39-220ENST00000613444 RMI1Q9H9A7 625 aa13.95□□□□□ -0.18
USP39-220ENST00000613444 FGF22Q9HCT0 170 aa13.95□□□□□ -0.18
USP39-220ENST00000613444 MRPL40Q9NQ50 206 aaKnown RBP13.95□□□□□ -0.18
USP39-220ENST00000613444 HS3ST3A1Q9Y663 406 aa13.95□□□□□ -0.18
USP39-220ENST00000613444 USH1CQ9Y6N9 552 aa13.95□□□□□ -0.18
USP39-220ENST00000613444 A0A0G2JND7 137 aa13.94□□□□□ -0.18
USP39-220ENST00000613444 A0A1B0GTL3 188 aa13.94□□□□□ -0.18
USP39-220ENST00000613444 KRT87PA6NCN2 255 aa13.94□□□□□ -0.18
USP39-220ENST00000613444 ARHGEF33A8MVX0 844 aa13.94□□□□□ -0.18
USP39-220ENST00000613444 H3BM21 787 aa13.94□□□□□ -0.18
USP39-220ENST00000613444 K7ESF4 209 aa13.94□□□□□ -0.18
USP39-220ENST00000613444 CACNB4O00305 520 aaPredicted RBP13.94□□□□□ -0.18
USP39-220ENST00000613444 MATN2O00339 956 aa13.94□□□□□ -0.18
USP39-220ENST00000613444 ACADLP28330 430 aa13.94□□□□□ -0.18
USP39-220ENST00000613444 RPL14P50914 215 aaKnown RBP13.94□□□□□ -0.18
USP39-220ENST00000613444 SH3BP2P78314 561 aa13.94□□□□□ -0.18
USP39-220ENST00000613444 PLOD1Q02809 727 aaPredicted RBP13.94□□□□□ -0.18
USP39-220ENST00000613444 PYCR3Q53H96 274 aa13.94□□□□□ -0.18
USP39-220ENST00000613444 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.94□□□□□ -0.18
USP39-220ENST00000613444 METRNLQ641Q3 311 aa13.94□□□□□ -0.18
USP39-220ENST00000613444 ANKS6Q68DC2 871 aa13.94□□□□□ -0.18
USP39-220ENST00000613444 CWF19L1Q69YN2 538 aaKnown RBP13.94□□□□□ -0.18
USP39-220ENST00000613444 SULT1C3Q6IMI6 304 aa13.94□□□□□ -0.18
USP39-220ENST00000613444 CUZD1Q86UP6 607 aa13.94□□□□□ -0.18
USP39-220ENST00000613444 CAMKK1Q8N5S9 505 aa13.94□□□□□ -0.18
USP39-220ENST00000613444 UBTD2Q8WUN7 234 aa13.94□□□□□ -0.18
USP39-220ENST00000613444 TMEM120AQ9BXJ8 343 aa13.94□□□□□ -0.18
USP39-220ENST00000613444 KCNK4Q9NYG8 393 aa13.94□□□□□ -0.18
USP39-220ENST00000613444 ZNHIT2Q9UHR6 403 aa13.94□□□□□ -0.18
USP39-220ENST00000613444 EIF2B4Q9UI10 523 aaKnown RBP13.94□□□□□ -0.18
USP39-220ENST00000613444 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.94□□□□□ -0.18
USP39-220ENST00000613444 FSBPO95073 299 aa13.93□□□□□ -0.18
USP39-220ENST00000613444 PDGFBP01127 241 aaPredicted RBP13.93□□□□□ -0.18
USP39-220ENST00000613444 AKT2P31751 481 aa13.93□□□□□ -0.18
USP39-220ENST00000613444 AQP5P55064 265 aa13.93□□□□□ -0.18
USP39-220ENST00000613444 CLCQ05315 142 aa13.93□□□□□ -0.18
USP39-220ENST00000613444 DMPKQ09013 629 aa13.93□□□□□ -0.18
USP39-220ENST00000613444 NFATC4Q14934 902 aa13.93□□□□□ -0.18
USP39-220ENST00000613444 FAM219BQ5XKK7 198 aa13.93□□□□□ -0.18
USP39-220ENST00000613444 ABI3BPQ7Z7G0 1075 aa13.93□□□□□ -0.18
USP39-220ENST00000613444 WDR75Q8IWA0 830 aaKnown RBP13.93□□□□□ -0.18
USP39-220ENST00000613444 AGR3Q8TD06 166 aa13.93□□□□□ -0.18
USP39-220ENST00000613444 MAPK15Q8TD08 544 aa13.93□□□□□ -0.18
USP39-220ENST00000613444 SIKE1Q9BRV8 207 aa13.93□□□□□ -0.18
USP39-220ENST00000613444 PNMA8BQ9ULN7 279 aaPredicted RBP13.93□□□□□ -0.18
USP39-220ENST00000613444 SUFUQ9UMX1 484 aa13.93□□□□□ -0.18
USP39-220ENST00000613444 ST14Q9Y5Y6 855 aa13.93□□□□□ -0.18
USP39-220ENST00000613444 BDP1A6H8Y1 2624 aa13.93□□□□□ -0.18
USP39-220ENST00000613444 A0A0C4DFX4 3053 aa13.93□□□□□ -0.18
USP39-220ENST00000613444 KNL1Q8NG31 2342 aa13.93□□□□□ -0.18
USP39-220ENST00000613444 ERICH4A6NGS2 130 aa13.93□□□□□ -0.18
USP39-220ENST00000613444 TMEM233B4DJY2 109 aa13.93□□□□□ -0.18
USP39-220ENST00000613444 PRAMEF26H0Y7S4 382 aa13.93□□□□□ -0.18
USP39-220ENST00000613444 PI15O43692 258 aa13.93□□□□□ -0.18
USP39-220ENST00000613444 GGT5P36269 586 aa13.93□□□□□ -0.18
USP39-220ENST00000613444 ARFIP2P53365 341 aa13.93□□□□□ -0.18
USP39-220ENST00000613444 RPA4Q13156 261 aa13.93□□□□□ -0.18
USP39-220ENST00000613444 CCSMST1Q4G0I0 132 aa13.93□□□□□ -0.18
USP39-220ENST00000613444 MAMSTRQ6ZN01 415 aa13.93□□□□□ -0.18
USP39-220ENST00000613444 EBF4Q9BQW3 602 aa13.93□□□□□ -0.18
USP39-220ENST00000613444 TIMM29Q9BSF4 260 aa13.93□□□□□ -0.18
USP39-220ENST00000613444 EML4Q9HC35 981 aaKnown RBP13.93□□□□□ -0.18
USP39-220ENST00000613444 ARL15Q9NXU5 204 aa13.93□□□□□ -0.18
USP39-220ENST00000613444 ZNF225Q9UK10 706 aa13.93□□□□□ -0.18
USP39-220ENST00000613444 DMTF1Q9Y222 760 aa13.93□□□□□ -0.18
USP39-220ENST00000613444 TNPO3Q9Y5L0 923 aaKnown RBP13.93□□□□□ -0.18
USP39-220ENST00000613444 SLCO1B1Q9Y6L6 691 aa13.93□□□□□ -0.18
USP39-220ENST00000613444 PRSS38A1L453 326 aa13.92□□□□□ -0.18
USP39-220ENST00000613444 KLHL33A6NCF5 533 aa13.92□□□□□ -0.18
USP39-220ENST00000613444 EBAG9O00559 213 aa13.92□□□□□ -0.18
USP39-220ENST00000613444 S100BP04271 92 aaPredicted RBP13.92□□□□□ -0.18
USP39-220ENST00000613444 JUNP05412 331 aaKnown RBP13.92□□□□□ -0.18
USP39-220ENST00000613444 ANXA5P08758 320 aa13.92□□□□□ -0.18
USP39-220ENST00000613444 CYP2A7P20853 494 aa13.92□□□□□ -0.18
USP39-220ENST00000613444 CXCL12P48061 93 aa13.92□□□□□ -0.18
USP39-220ENST00000613444 HSPA7P48741 367 aa13.92□□□□□ -0.18
USP39-220ENST00000613444 AP1S2P56377 157 aa13.92□□□□□ -0.18
USP39-220ENST00000613444 NAA20P61599 178 aa13.92□□□□□ -0.18
USP39-220ENST00000613444 YPEL5P62699 121 aa13.92□□□□□ -0.18
USP39-220ENST00000613444 LCP2Q13094 533 aa13.92□□□□□ -0.18
USP39-220ENST00000613444 SH2D4BQ5SQS7 431 aa13.92□□□□□ -0.18
USP39-220ENST00000613444 FBXO15Q8NCQ5 510 aaPredicted RBP13.92□□□□□ -0.18
USP39-220ENST00000613444 SPDYE1Q8NFV5 336 aaPredicted RBP13.92□□□□□ -0.18
USP39-220ENST00000613444 OR56A4Q8NGH8 313 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms