RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 CDKN2DP55273 166 aa18.87■□□□□ 0.61
UPF1-209ENST00000600310 OR1D5P58170 312 aa18.87■□□□□ 0.61
UPF1-209ENST00000600310 VSNL1P62760 191 aa18.87■□□□□ 0.61
UPF1-209ENST00000600310 CCL7P80098 99 aa18.87■□□□□ 0.61
UPF1-209ENST00000600310 ACSBG2Q5FVE4 666 aa18.87■□□□□ 0.61
UPF1-209ENST00000600310 WDR93Q6P2C0 686 aa18.87■□□□□ 0.61
UPF1-209ENST00000600310 SIDT2Q8NBJ9 832 aaKnown RBP18.87■□□□□ 0.61
UPF1-209ENST00000600310 WDR48Q8TAF3 677 aa18.87■□□□□ 0.61
UPF1-209ENST00000600310 CD200R1Q8TD46 325 aa18.87■□□□□ 0.61
UPF1-209ENST00000600310 VPS39Q96JC1 886 aa18.87■□□□□ 0.61
UPF1-209ENST00000600310 FERD3LQ96RJ6 166 aa18.87■□□□□ 0.61
UPF1-209ENST00000600310 CYTH2Q99418 400 aa18.87■□□□□ 0.61
UPF1-209ENST00000600310 ABCG4Q9H172 646 aa18.87■□□□□ 0.61
UPF1-209ENST00000600310 LRRN3Q9H3W5 708 aa18.87■□□□□ 0.61
UPF1-209ENST00000600310 MVB12BQ9H7P6 319 aa18.87■□□□□ 0.61
UPF1-209ENST00000600310 KCNK4Q9NYG8 393 aa18.87■□□□□ 0.61
UPF1-209ENST00000600310 NCOR2Q9Y618 2525 aa18.87■□□□□ 0.61
UPF1-209ENST00000600310 FAM95CA0A1B0GW59 222 aa18.86■□□□□ 0.61
UPF1-209ENST00000600310 A0A1W2PQM1 296 aa18.86■□□□□ 0.61
UPF1-209ENST00000600310 NTN3O00634 580 aaPredicted RBP18.86■□□□□ 0.61
UPF1-209ENST00000600310 ABHD2P08910 425 aa18.86■□□□□ 0.61
UPF1-209ENST00000600310 FDXRP22570 491 aa18.86■□□□□ 0.61
UPF1-209ENST00000600310 INSM1Q01101 510 aaPredicted RBP18.86■□□□□ 0.61
UPF1-209ENST00000600310 GPR18Q14330 331 aa18.86■□□□□ 0.61
UPF1-209ENST00000600310 KRT33BQ14525 404 aa18.86■□□□□ 0.61
UPF1-209ENST00000600310 EFTUD2Q15029 972 aaKnown RBP eCLIP18.86■□□□□ 0.613e-6■■■□□ 18.5
UPF1-209ENST00000600310 GRTP1Q5TC63 336 aa18.86■□□□□ 0.61
UPF1-209ENST00000600310 PHC3Q8NDX5 983 aa18.86■□□□□ 0.61
UPF1-209ENST00000600310 ATXN7L3BQ96GX2 97 aa18.86■□□□□ 0.61
UPF1-209ENST00000600310 RBBP8Q99708 897 aa18.86■□□□□ 0.61
UPF1-209ENST00000600310 KIR3DX1Q9H7L2 352 aa18.86■□□□□ 0.61
UPF1-209ENST00000600310 TRMT6Q9UJA5 497 aaKnown RBP18.86■□□□□ 0.61
UPF1-209ENST00000600310 ASF1AQ9Y294 204 aa18.86■□□□□ 0.61
UPF1-209ENST00000600310 ASXL3Q9C0F0 2248 aa18.85■□□□□ 0.61
UPF1-209ENST00000600310 A0A087WUV0 522 aaPredicted RBP18.85■□□□□ 0.61
UPF1-209ENST00000600310 IGHV1OR21-1A0A087WYE8 117 aa18.85■□□□□ 0.61
UPF1-209ENST00000600310 RIPK2O43353 540 aa18.85■□□□□ 0.61
UPF1-209ENST00000600310 RPLP0P05388 317 aaKnown RBP18.85■□□□□ 0.61
UPF1-209ENST00000600310 CBSLP0DN79 551 aa18.85■□□□□ 0.61
UPF1-209ENST00000600310 ENO3P13929 434 aaPredicted RBP18.85■□□□□ 0.61
UPF1-209ENST00000600310 MCM3P25205 808 aa18.85■□□□□ 0.61
UPF1-209ENST00000600310 CD1CP29017 333 aa18.85■□□□□ 0.61
UPF1-209ENST00000600310 CBSP35520 551 aa18.85■□□□□ 0.61
UPF1-209ENST00000600310 LIMK2P53671 638 aa18.85■□□□□ 0.61
UPF1-209ENST00000600310 GPLD1P80108 840 aa18.85■□□□□ 0.61
UPF1-209ENST00000600310 ABRQ12979 859 aa18.85■□□□□ 0.61
UPF1-209ENST00000600310 SQSTM1Q13501 440 aa18.85■□□□□ 0.61
UPF1-209ENST00000600310 CLPPQ16740 277 aaPredicted RBP18.85■□□□□ 0.61
UPF1-209ENST00000600310 NEK10Q6ZWH5 1172 aa18.85■□□□□ 0.61
UPF1-209ENST00000600310 RAB44Q7Z6P3 723 aaPredicted RBP18.85■□□□□ 0.61
UPF1-209ENST00000600310 PIM3Q86V86 326 aa18.85■□□□□ 0.61
UPF1-209ENST00000600310 TBC1D21Q8IYX1 336 aa18.85■□□□□ 0.61
UPF1-209ENST00000600310 ACVR1CQ8NER5 493 aa18.85■□□□□ 0.61
UPF1-209ENST00000600310 ELMO2Q96JJ3 720 aa18.85■□□□□ 0.61
UPF1-209ENST00000600310 OLFM1Q99784 485 aa18.85■□□□□ 0.61
UPF1-209ENST00000600310 TBC1D10AQ9BXI6 508 aa18.85■□□□□ 0.61
UPF1-209ENST00000600310 EPB41L1Q9H4G0 881 aa18.85■□□□□ 0.61
UPF1-209ENST00000600310 SLC24A2Q9UI40 661 aa18.85■□□□□ 0.61
UPF1-209ENST00000600310 BPTFQ12830 3046 aa18.84■□□□□ 0.61
UPF1-209ENST00000600310 EIF3FO00303 357 aaPredicted RBP18.84■□□□□ 0.61
UPF1-209ENST00000600310 CASC3O15234 703 aaKnown RBP18.84■□□□□ 0.61
UPF1-209ENST00000600310 FAM155BO75949 473 aa18.84■□□□□ 0.61
UPF1-209ENST00000600310 SPRP35270 261 aaPredicted RBP18.84■□□□□ 0.61
UPF1-209ENST00000600310 TAS2R39P59534 338 aa18.84■□□□□ 0.61
UPF1-209ENST00000600310 KLHL38Q2WGJ6 581 aa18.84■□□□□ 0.61
UPF1-209ENST00000600310 CDCP2Q5VXM1 449 aa18.84■□□□□ 0.61
UPF1-209ENST00000600310 PAQR3Q6TCH7 311 aa18.84■□□□□ 0.61
UPF1-209ENST00000600310 UNC5DQ6UXZ4 953 aa18.84■□□□□ 0.61
UPF1-209ENST00000600310 SPNS2Q8IVW8 549 aa18.84■□□□□ 0.61
UPF1-209ENST00000600310 CPNE9Q8IYJ1 553 aa18.84■□□□□ 0.61
UPF1-209ENST00000600310 CACTIN-AS1Q8N1I8 211 aa18.84■□□□□ 0.61
UPF1-209ENST00000600310 OR10G6Q8NH81 332 aa18.84■□□□□ 0.61
UPF1-209ENST00000600310 OR5K2Q8NHB8 316 aa18.84■□□□□ 0.61
UPF1-209ENST00000600310 GPR22Q99680 433 aa18.84■□□□□ 0.61
UPF1-209ENST00000600310 PARD6BQ9BYG5 372 aa18.84■□□□□ 0.61
UPF1-209ENST00000600310 TRIT1Q9H3H1 467 aaKnown RBP18.84■□□□□ 0.61
UPF1-209ENST00000600310 RRAGDQ9NQL2 400 aaPredicted RBP18.84■□□□□ 0.61
UPF1-209ENST00000600310 MTO1Q9Y2Z2 717 aaKnown RBP18.84■□□□□ 0.61
UPF1-209ENST00000600310 TCEA3O75764 348 aa18.83■□□□□ 0.6
UPF1-209ENST00000600310 MATN4O95460 622 aa18.83■□□□□ 0.6
UPF1-209ENST00000600310 MPC1LP0DKB6 136 aa18.83■□□□□ 0.6
UPF1-209ENST00000600310 POU4F1Q01851 419 aa18.83■□□□□ 0.6
UPF1-209ENST00000600310 PDAP1Q13442 181 aaKnown RBP18.83■□□□□ 0.6
UPF1-209ENST00000600310 SPIDRQ14159 915 aa18.83■□□□□ 0.6
UPF1-209ENST00000600310 AMZ1Q400G9 498 aa18.83■□□□□ 0.6
UPF1-209ENST00000600310 HES3Q5TGS1 186 aa18.83■□□□□ 0.6
UPF1-209ENST00000600310 NKAIN2Q5VXU1 208 aa18.83■□□□□ 0.6
UPF1-209ENST00000600310 CYHR1Q6ZMK1 362 aa18.83■□□□□ 0.6
UPF1-209ENST00000600310 TMPRSS12Q86WS5 348 aa18.83■□□□□ 0.6
UPF1-209ENST00000600310 CHCHD4Q8N4Q1 142 aa18.83■□□□□ 0.6
UPF1-209ENST00000600310 OR5AR1Q8NGP9 310 aa18.83■□□□□ 0.6
UPF1-209ENST00000600310 CFAP61Q8NHU2 1237 aa18.83■□□□□ 0.6
UPF1-209ENST00000600310 UHMK1Q8TAS1 419 aaKnown RBP18.83■□□□□ 0.6
UPF1-209ENST00000600310 SKA2Q8WVK7 121 aaPredicted RBP18.83■□□□□ 0.6
UPF1-209ENST00000600310 AHCYL2Q96HN2 611 aaKnown RBP18.83■□□□□ 0.6
UPF1-209ENST00000600310 FOPNLQ96NB1 174 aa18.83■□□□□ 0.6
UPF1-209ENST00000600310 GFM1Q96RP9 751 aaKnown RBP18.83■□□□□ 0.6
UPF1-209ENST00000600310 EPB41L4BQ9H329 900 aa18.83■□□□□ 0.6
UPF1-209ENST00000600310 SYNDIG1Q9H7V2 258 aa18.83■□□□□ 0.6
UPF1-209ENST00000600310 POLG2Q9UHN1 485 aa18.83■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms