RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 C19orf43Q9BQ61 176 aa12.46□□□□□ -0.41
UPF1-208ENST00000600012 CLMPQ9H6B4 373 aa12.46□□□□□ -0.41
UPF1-208ENST00000600012 ASB8Q9H765 288 aa12.46□□□□□ -0.41
UPF1-208ENST00000600012 PISDQ9UG56 409 aa12.46□□□□□ -0.41
UPF1-208ENST00000600012 CRLS1Q9UJA2 301 aa12.46□□□□□ -0.41
UPF1-208ENST00000600012 LOXL2Q9Y4K0 774 aa12.46□□□□□ -0.41
UPF1-208ENST00000600012 FAM95CA0A1B0GW59 222 aa12.45□□□□□ -0.42
UPF1-208ENST00000600012 PSMD11O00231 422 aa12.45□□□□□ -0.42
UPF1-208ENST00000600012 TNFRSF10CO14798 259 aa12.45□□□□□ -0.42
UPF1-208ENST00000600012 EFSO43281 561 aa12.45□□□□□ -0.42
UPF1-208ENST00000600012 NOBOXO60393 691 aa12.45□□□□□ -0.42
UPF1-208ENST00000600012 RECQL5O94762 991 aaPredicted RBP12.45□□□□□ -0.42
UPF1-208ENST00000600012 S1PR4O95977 384 aa12.45□□□□□ -0.42
UPF1-208ENST00000600012 MT-ND3P03897 115 aa12.45□□□□□ -0.42
UPF1-208ENST00000600012 HOXC4P09017 264 aaPredicted RBP12.45□□□□□ -0.42
UPF1-208ENST00000600012 CNTFP26441 200 aa12.45□□□□□ -0.42
UPF1-208ENST00000600012 LEPRP48357 1165 aaKnown RBP12.45□□□□□ -0.42
UPF1-208ENST00000600012 ZFP36L1Q07352 338 aaKnown RBP12.45□□□□□ -0.42
UPF1-208ENST00000600012 C14orf28Q4W4Y0 310 aa12.45□□□□□ -0.42
UPF1-208ENST00000600012 OGFOD3Q6PK18 319 aa12.45□□□□□ -0.42
UPF1-208ENST00000600012 USP53Q70EK8 1073 aa12.45□□□□□ -0.42
UPF1-208ENST00000600012 SNX20Q7Z614 316 aa12.45□□□□□ -0.42
UPF1-208ENST00000600012 SPRED1Q7Z699 444 aa12.45□□□□□ -0.42
UPF1-208ENST00000600012 TECPR1Q7Z6L1 1165 aa12.45□□□□□ -0.42
UPF1-208ENST00000600012 CMC1Q7Z7K0 106 aa12.45□□□□□ -0.42
UPF1-208ENST00000600012 SDCCAG8Q86SQ7 713 aaPredicted RBP12.45□□□□□ -0.42
UPF1-208ENST00000600012 KRT222Q8N1A0 295 aa12.45□□□□□ -0.42
UPF1-208ENST00000600012 GPATCH11Q8N954 259 aa12.45□□□□□ -0.42
UPF1-208ENST00000600012 Q8N9G6 341 aaPredicted RBP12.45□□□□□ -0.42
UPF1-208ENST00000600012 PLA2G15Q8NCC3 412 aa12.45□□□□□ -0.42
UPF1-208ENST00000600012 FAM46DQ8NEK8 389 aa12.45□□□□□ -0.42
UPF1-208ENST00000600012 SCAMP4Q969E2 229 aa12.45□□□□□ -0.42
UPF1-208ENST00000600012 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.45□□□□□ -0.42
UPF1-208ENST00000600012 FUBP1Q96AE4 644 aaKnown RBP12.45□□□□□ -0.42
UPF1-208ENST00000600012 MTBPQ96DY7 904 aa12.45□□□□□ -0.42
UPF1-208ENST00000600012 SGF29Q96ES7 293 aa12.45□□□□□ -0.42
UPF1-208ENST00000600012 DTD2Q96FN9 168 aa12.45□□□□□ -0.42
UPF1-208ENST00000600012 COQ10AQ96MF6 247 aa12.45□□□□□ -0.42
UPF1-208ENST00000600012 PLEKHG4BQ96PX9 1271 aa12.45□□□□□ -0.42
UPF1-208ENST00000600012 NDNQ99608 321 aa12.45□□□□□ -0.42
UPF1-208ENST00000600012 GPR22Q99680 433 aa12.45□□□□□ -0.42
UPF1-208ENST00000600012 SELENOSQ9BQE4 189 aa12.45□□□□□ -0.42
UPF1-208ENST00000600012 ABCG8Q9H221 673 aa12.45□□□□□ -0.42
UPF1-208ENST00000600012 CAB39LQ9H9S4 337 aa12.45□□□□□ -0.42
UPF1-208ENST00000600012 FGF22Q9HCT0 170 aa12.45□□□□□ -0.42
UPF1-208ENST00000600012 CRYL1Q9Y2S2 319 aa12.45□□□□□ -0.42
UPF1-208ENST00000600012 UBA6A0AVT1 1052 aaPredicted RBP12.44□□□□□ -0.42
UPF1-208ENST00000600012 TMEM202A6NGA9 273 aa12.44□□□□□ -0.42
UPF1-208ENST00000600012 POLR3GO15318 223 aaPredicted RBP12.44□□□□□ -0.42
UPF1-208ENST00000600012 NUDT21O43809 227 aaKnown RBP12.44□□□□□ -0.42
UPF1-208ENST00000600012 SPAG7O75391 227 aa12.44□□□□□ -0.42
UPF1-208ENST00000600012 NDUFS3O75489 264 aa12.44□□□□□ -0.42
UPF1-208ENST00000600012 RFPL1O75677 317 aa12.44□□□□□ -0.42
UPF1-208ENST00000600012 ITGB2P05107 769 aa12.44□□□□□ -0.42
UPF1-208ENST00000600012 SAT1P21673 171 aa12.44□□□□□ -0.42
UPF1-208ENST00000600012 PGGT1BP53609 377 aa12.44□□□□□ -0.42
UPF1-208ENST00000600012 DCDC1P59894 354 aa12.44□□□□□ -0.42
UPF1-208ENST00000600012 NFATC2Q13469 925 aa12.44□□□□□ -0.42
UPF1-208ENST00000600012 TGIF1Q15583 401 aa12.44□□□□□ -0.42
UPF1-208ENST00000600012 DBN1Q16643 649 aa12.44□□□□□ -0.42
UPF1-208ENST00000600012 ATP13A5Q4VNC0 1218 aa12.44□□□□□ -0.42
UPF1-208ENST00000600012 AARS2Q5JTZ9 985 aaKnown RBP12.44□□□□□ -0.42
UPF1-208ENST00000600012 ZDHHC20Q5W0Z9 365 aa12.44□□□□□ -0.42
UPF1-208ENST00000600012 GALNT7Q86SF2 657 aa12.44□□□□□ -0.42
UPF1-208ENST00000600012 SERPINA9Q86WD7 417 aa12.44□□□□□ -0.42
UPF1-208ENST00000600012 SPNS2Q8IVW8 549 aa12.44□□□□□ -0.42
UPF1-208ENST00000600012 ZNF398Q8TD17 642 aa12.44□□□□□ -0.42
UPF1-208ENST00000600012 LPGAT1Q92604 370 aa12.44□□□□□ -0.42
UPF1-208ENST00000600012 NUS1Q96E22 293 aa12.44□□□□□ -0.42
UPF1-208ENST00000600012 ELMO2Q96JJ3 720 aa12.44□□□□□ -0.42
UPF1-208ENST00000600012 CMKLR1Q99788 373 aa12.44□□□□□ -0.42
UPF1-208ENST00000600012 RIOK2Q9BVS4 552 aaKnown RBP12.44□□□□□ -0.42
UPF1-208ENST00000600012 SPATA16Q9BXB7 569 aa12.44□□□□□ -0.42
UPF1-208ENST00000600012 DPEP2Q9H4A9 486 aa12.44□□□□□ -0.42
UPF1-208ENST00000600012 FAM83DQ9H4H8 585 aa12.44□□□□□ -0.42
UPF1-208ENST00000600012 WDR26Q9H7D7 661 aa12.44□□□□□ -0.42
UPF1-208ENST00000600012 MRPL40Q9NQ50 206 aaKnown RBP12.44□□□□□ -0.42
UPF1-208ENST00000600012 PCMTD2Q9NV79 361 aa12.44□□□□□ -0.42
UPF1-208ENST00000600012 INTS10Q9NVR2 710 aaKnown RBP12.44□□□□□ -0.42
UPF1-208ENST00000600012 NFKBIL1Q9UBC1 381 aaPredicted RBP12.44□□□□□ -0.42
UPF1-208ENST00000600012 SLC39A10Q9ULF5 831 aa12.44□□□□□ -0.42
UPF1-208ENST00000600012 TRBV5-4A0A0C4DH59 114 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 B4DGG1 531 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 OR1I1O60431 355 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 WISP1O95388 367 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 ALDOAP04075 364 aaKnown RBP12.43□□□□□ -0.42
UPF1-208ENST00000600012 PYGBP11216 843 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 BRAFP15056 766 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 KRT4P19013 534 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 ITIH1P19827 911 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 NR1D1P20393 614 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 TRIM23P36406 574 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 GMPRP36959 345 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 CCNFP41002 786 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 TTPAP49638 278 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 SERPINB8P50452 374 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 KCNC4Q03721 635 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 NFATC3Q12968 1075 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 MANEAQ5SRI9 462 aa12.43□□□□□ -0.42
UPF1-208ENST00000600012 HENMT1Q5T8I9 393 aaKnown RBP12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms