RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, human

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-218	ENST00000598907	FBXO25	Q8TCJ0	367 aa		13.63	□□□□□ -0.23
SHKBP1-218	ENST00000598907	PIH1D2	Q8WWB5	315 aa		13.63	□□□□□ -0.23
SHKBP1-218	ENST00000598907	THAP4	Q8WY91	577 aa		13.63	□□□□□ -0.23
SHKBP1-218	ENST00000598907	TBL1Y	Q9BQ87	522 aa		13.63	□□□□□ -0.23
SHKBP1-218	ENST00000598907	FRMD8	Q9BZ67	464 aa	Predicted RBP	13.63	□□□□□ -0.23
SHKBP1-218	ENST00000598907	G3BP2	Q9UN86	482 aa	Known RBP	13.63	□□□□□ -0.23
SHKBP1-218	ENST00000598907	RPL26L1	Q9UNX3	145 aa	Known RBP	13.63	□□□□□ -0.23
SHKBP1-218	ENST00000598907	CHKB	Q9Y259	395 aa		13.63	□□□□□ -0.23
SHKBP1-218	ENST00000598907	PPIL1	Q9Y3C6	166 aa		13.63	□□□□□ -0.23
SHKBP1-218	ENST00000598907	PCDHGA6	Q9Y5G7	932 aa		13.63	□□□□□ -0.23
SHKBP1-218	ENST00000598907	NDST3	O95803	873 aa		13.62	□□□□□ -0.23
SHKBP1-218	ENST00000598907	GM2A	P17900	193 aa		13.62	□□□□□ -0.23
SHKBP1-218	ENST00000598907	CA4	P22748	312 aa		13.62	□□□□□ -0.23
SHKBP1-218	ENST00000598907	FASLG	P48023	281 aa		13.62	□□□□□ -0.23
SHKBP1-218	ENST00000598907	TERF1	P54274	439 aa		13.62	□□□□□ -0.23
SHKBP1-218	ENST00000598907	GFER	P55789	205 aa		13.62	□□□□□ -0.23
SHKBP1-218	ENST00000598907	HHEX	Q03014	270 aa		13.62	□□□□□ -0.23
SHKBP1-218	ENST00000598907	PEX6	Q13608	980 aa		13.62	□□□□□ -0.23
SHKBP1-218	ENST00000598907	SLC1A5	Q15758	541 aa		13.62	□□□□□ -0.23
SHKBP1-218	ENST00000598907	PCSK7	Q16549	785 aa		13.62	□□□□□ -0.23
SHKBP1-218	ENST00000598907	ARMC12	Q5T9G4	340 aa		13.62	□□□□□ -0.23
SHKBP1-218	ENST00000598907	DENND2C	Q68D51	928 aa		13.62	□□□□□ -0.23
SHKBP1-218	ENST00000598907	LIPI	Q6XZB0	460 aa		13.62	□□□□□ -0.23
SHKBP1-218	ENST00000598907	NUS1	Q96E22	293 aa		13.62	□□□□□ -0.23
SHKBP1-218	ENST00000598907	OR2M4	Q96R27	311 aa		13.62	□□□□□ -0.23
SHKBP1-218	ENST00000598907	FICD	Q9BVA6	458 aa		13.62	□□□□□ -0.23
SHKBP1-218	ENST00000598907	LHX9	Q9NQ69	397 aa		13.62	□□□□□ -0.23
SHKBP1-218	ENST00000598907	RAB21	Q9UL25	225 aa		13.62	□□□□□ -0.23
SHKBP1-218	ENST00000598907	PADI1	Q9ULC6	663 aa		13.62	□□□□□ -0.23
SHKBP1-218	ENST00000598907	HEATR9	A2RTY3	570 aa		13.61	□□□□□ -0.23
SHKBP1-218	ENST00000598907	ANKRD66	B4E2M5	251 aa		13.61	□□□□□ -0.23
SHKBP1-218	ENST00000598907	EML2	O95834	649 aa		13.61	□□□□□ -0.23
SHKBP1-218	ENST00000598907	HLA-DPA1	P20036	260 aa		13.61	□□□□□ -0.23
SHKBP1-218	ENST00000598907	CHRNA4	P43681	627 aa		13.61	□□□□□ -0.23
SHKBP1-218	ENST00000598907	LMAN1	P49257	510 aa		13.61	□□□□□ -0.23
SHKBP1-218	ENST00000598907	PLTP	P55058	493 aa		13.61	□□□□□ -0.23
SHKBP1-218	ENST00000598907	SARNP	P82979	210 aa	Known RBP	13.61	□□□□□ -0.23
SHKBP1-218	ENST00000598907	PLEKHN1	Q494U1	663 aa	Predicted RBP	13.61	□□□□□ -0.23
SHKBP1-218	ENST00000598907	SIRPB2	Q5JXA9	342 aa		13.61	□□□□□ -0.23
SHKBP1-218	ENST00000598907	FAM199X	Q6PEV8	388 aa	Predicted RBP	13.61	□□□□□ -0.23
SHKBP1-218	ENST00000598907	BRAT1	Q6PJG6	821 aa		13.61	□□□□□ -0.23
SHKBP1-218	ENST00000598907	PPP1R21	Q6ZMI0	780 aa		13.61	□□□□□ -0.23
SHKBP1-218	ENST00000598907	MARK2	Q7KZI7	788 aa	Known RBP	13.61	□□□□□ -0.23
SHKBP1-218	ENST00000598907	MMP21	Q8N119	569 aa		13.61	□□□□□ -0.23
SHKBP1-218	ENST00000598907	OR52K1	Q8NGK4	314 aa		13.61	□□□□□ -0.23
SHKBP1-218	ENST00000598907	IFT81	Q8WYA0	676 aa		13.61	□□□□□ -0.23
SHKBP1-218	ENST00000598907	SERPINB12	Q96P63	405 aa		13.61	□□□□□ -0.23
SHKBP1-218	ENST00000598907	APOL2	Q9BQE5	337 aa		13.61	□□□□□ -0.23
SHKBP1-218	ENST00000598907	TBC1D10A	Q9BXI6	508 aa		13.61	□□□□□ -0.23
SHKBP1-218	ENST00000598907	FSD1L	Q9BXM9	530 aa		13.61	□□□□□ -0.23
SHKBP1-218	ENST00000598907	ADGRE3	Q9BY15	652 aa		13.61	□□□□□ -0.23
SHKBP1-218	ENST00000598907	PARD6B	Q9BYG5	372 aa		13.61	□□□□□ -0.23
SHKBP1-218	ENST00000598907	PHACTR1	Q9C0D0	580 aa		13.61	□□□□□ -0.23
SHKBP1-218	ENST00000598907	XAB2	Q9HCS7	855 aa	Known RBP	13.61	□□□□□ -0.23
SHKBP1-218	ENST00000598907	OSGIN2	Q9Y236	505 aa		13.61	□□□□□ -0.23
SHKBP1-218	ENST00000598907	SVIL	O95425	2214 aa		13.6	□□□□□ -0.23
SHKBP1-218	ENST00000598907	C21orf140	B9A014	251 aa		13.6	□□□□□ -0.23
SHKBP1-218	ENST00000598907		E7ESA3	106 aa		13.6	□□□□□ -0.23
SHKBP1-218	ENST00000598907	AP3B1	O00203	1094 aa		13.6	□□□□□ -0.23
SHKBP1-218	ENST00000598907	TIAF1	O95411	115 aa		13.6	□□□□□ -0.23
SHKBP1-218	ENST00000598907	TUBB	P07437	444 aa		13.6	□□□□□ -0.23
SHKBP1-218	ENST00000598907	NPY2R	P49146	381 aa		13.6	□□□□□ -0.23
SHKBP1-218	ENST00000598907	VSNL1	P62760	191 aa		13.6	□□□□□ -0.23
SHKBP1-218	ENST00000598907	CDK3	Q00526	305 aa		13.6	□□□□□ -0.23
SHKBP1-218	ENST00000598907	CDH17	Q12864	832 aa		13.6	□□□□□ -0.23
SHKBP1-218	ENST00000598907	QPCT	Q16769	361 aa		13.6	□□□□□ -0.23
SHKBP1-218	ENST00000598907	FNBP1L	Q5T0N5	605 aa		13.6	□□□□□ -0.23
SHKBP1-218	ENST00000598907	CHCHD2P9	Q5T1J5	151 aa	Predicted RBP	13.6	□□□□□ -0.23
SHKBP1-218	ENST00000598907	ZNF517	Q6ZMY9	492 aa	Predicted RBP	13.6	□□□□□ -0.23
SHKBP1-218	ENST00000598907	AGGF1	Q8N302	714 aa	eCLIP	13.6	□□□□□ -0.23
SHKBP1-218	ENST00000598907	SFRP1	Q8N474	314 aa		13.6	□□□□□ -0.23
SHKBP1-218	ENST00000598907	DGCR8	Q8WYQ5	773 aa	Known RBP eCLIP	13.6	□□□□□ -0.23
SHKBP1-218	ENST00000598907	SIGLEC10	Q96LC7	697 aa		13.6	□□□□□ -0.23
SHKBP1-218	ENST00000598907	MCCC1	Q96RQ3	725 aa	Predicted RBP	13.6	□□□□□ -0.23
SHKBP1-218	ENST00000598907	LYSMD1	Q96S90	227 aa		13.6	□□□□□ -0.23
SHKBP1-218	ENST00000598907	TEX101	Q9BY14	249 aa		13.6	□□□□□ -0.23
SHKBP1-218	ENST00000598907	ILKAP	Q9H0C8	392 aa	Predicted RBP	13.6	□□□□□ -0.23
SHKBP1-218	ENST00000598907	STN1	Q9H668	368 aa	Known RBP	13.6	□□□□□ -0.23
SHKBP1-218	ENST00000598907	PCDHGB7	Q9Y5F8	929 aa		13.6	□□□□□ -0.23
SHKBP1-218	ENST00000598907	ABCA2	Q9BZC7	2435 aa		13.6	□□□□□ -0.23
SHKBP1-218	ENST00000598907	SPG11	Q96JI7	2443 aa		13.59	□□□□□ -0.23
SHKBP1-218	ENST00000598907		A0A0J9YYE9	177 aa		13.59	□□□□□ -0.23
SHKBP1-218	ENST00000598907	GOLGA8M	H3BSY2	632 aa		13.59	□□□□□ -0.23
SHKBP1-218	ENST00000598907	AVIL	O75366	819 aa		13.59	□□□□□ -0.23
SHKBP1-218	ENST00000598907	SPAG6	O75602	509 aa		13.59	□□□□□ -0.23
SHKBP1-218	ENST00000598907	RECK	O95980	971 aa		13.59	□□□□□ -0.23
SHKBP1-218	ENST00000598907	CP	P00450	1065 aa		13.59	□□□□□ -0.23
SHKBP1-218	ENST00000598907	TRBC1	P01850	177 aa		13.59	□□□□□ -0.23
SHKBP1-218	ENST00000598907	ANKRD34C	P0C6C1	535 aa		13.59	□□□□□ -0.23
SHKBP1-218	ENST00000598907	MYBL2	P10244	700 aa		13.59	□□□□□ -0.23
SHKBP1-218	ENST00000598907	MCM3	P25205	808 aa		13.59	□□□□□ -0.23
SHKBP1-218	ENST00000598907	POLR2L	P62875	67 aa	Known RBP	13.59	□□□□□ -0.23
SHKBP1-218	ENST00000598907	GALNT3	Q14435	633 aa		13.59	□□□□□ -0.23
SHKBP1-218	ENST00000598907	KYNU	Q16719	465 aa		13.59	□□□□□ -0.23
SHKBP1-218	ENST00000598907	MSS51	Q4VC12	460 aa		13.59	□□□□□ -0.23
SHKBP1-218	ENST00000598907	ARMC3	Q5W041	872 aa		13.59	□□□□□ -0.23
SHKBP1-218	ENST00000598907	RAET1G	Q6H3X3	334 aa		13.59	□□□□□ -0.23
SHKBP1-218	ENST00000598907	SYVN1	Q86TM6	617 aa		13.59	□□□□□ -0.23
SHKBP1-218	ENST00000598907	TRIM74	Q86UV6	250 aa		13.59	□□□□□ -0.23
SHKBP1-218	ENST00000598907	SLC25A41	Q8N5S1	370 aa		13.59	□□□□□ -0.23

Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms