RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 ZNF470Q6ECI4 717 aa13.49□□□□□ -0.25
UPF1-205ENST00000598209 LRRC69Q6ZNQ3 347 aa13.49□□□□□ -0.25
UPF1-205ENST00000598209 FAM92BQ6ZTR7 304 aa13.49□□□□□ -0.25
UPF1-205ENST00000598209 MAATS1Q7Z4T9 603 aa13.49□□□□□ -0.25
UPF1-205ENST00000598209 OOSP2Q86WS3 158 aa13.49□□□□□ -0.25
UPF1-205ENST00000598209 FAM129CQ86XR2 697 aa13.49□□□□□ -0.25
UPF1-205ENST00000598209 SLC22A15Q8IZD6 547 aa13.49□□□□□ -0.25
UPF1-205ENST00000598209 PDIK1LQ8N165 341 aa13.49□□□□□ -0.25
UPF1-205ENST00000598209 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.49□□□□□ -0.25
UPF1-205ENST00000598209 ASZ1Q8WWH4 475 aa13.49□□□□□ -0.25
UPF1-205ENST00000598209 ZDHHC12Q96GR4 267 aa13.49□□□□□ -0.25
UPF1-205ENST00000598209 PWWP2AQ96N64 755 aa13.49□□□□□ -0.25
UPF1-205ENST00000598209 BIRC8Q96P09 236 aa13.49□□□□□ -0.25
UPF1-205ENST00000598209 EBNA1BP2Q99848 306 aaKnown RBP13.49□□□□□ -0.25
UPF1-205ENST00000598209 HGH1Q9BTY7 390 aa13.49□□□□□ -0.25
UPF1-205ENST00000598209 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.49□□□□□ -0.25
UPF1-205ENST00000598209 ASF1AQ9Y294 204 aa13.49□□□□□ -0.25
UPF1-205ENST00000598209 VPS9D1Q9Y2B5 631 aa13.49□□□□□ -0.25
UPF1-205ENST00000598209 CRYL1Q9Y2S2 319 aa13.49□□□□□ -0.25
UPF1-205ENST00000598209 SNX24Q9Y343 169 aa13.49□□□□□ -0.25
UPF1-205ENST00000598209 ANKRD11Q6UB99 2663 aaPredicted RBP13.49□□□□□ -0.25
UPF1-205ENST00000598209 SDK2Q58EX2 2172 aa13.49□□□□□ -0.25
UPF1-205ENST00000598209 OR6C74A6NCV1 312 aa13.48□□□□□ -0.25
UPF1-205ENST00000598209 B4E171 279 aa13.48□□□□□ -0.25
UPF1-205ENST00000598209 C9orf172C9J069 976 aa13.48□□□□□ -0.25
UPF1-205ENST00000598209 KPNA5O15131 536 aa13.48□□□□□ -0.25
UPF1-205ENST00000598209 NVLO15381 856 aaKnown RBP13.48□□□□□ -0.25
UPF1-205ENST00000598209 TOX3O15405 576 aaPredicted RBP13.48□□□□□ -0.25
UPF1-205ENST00000598209 RAD51CO43502 376 aa13.48□□□□□ -0.25
UPF1-205ENST00000598209 KIF1CO43896 1103 aaKnown RBP13.48□□□□□ -0.25
UPF1-205ENST00000598209 PRAMEF10O60809 474 aa13.48□□□□□ -0.25
UPF1-205ENST00000598209 GPC4O75487 556 aa13.48□□□□□ -0.25
UPF1-205ENST00000598209 RASSF9O75901 435 aa13.48□□□□□ -0.25
UPF1-205ENST00000598209 TTC4O95801 387 aa13.48□□□□□ -0.25
UPF1-205ENST00000598209 S1PR4O95977 384 aa13.48□□□□□ -0.25
UPF1-205ENST00000598209 ESR1P03372 595 aa13.48□□□□□ -0.25
UPF1-205ENST00000598209 F7P08709 466 aaPredicted RBP13.48□□□□□ -0.25
UPF1-205ENST00000598209 TSPAN7P41732 249 aa13.48□□□□□ -0.25
UPF1-205ENST00000598209 ADARP55265 1226 aaKnown RBP13.48□□□□□ -0.25
UPF1-205ENST00000598209 ARL4CP56559 192 aa13.48□□□□□ -0.25
UPF1-205ENST00000598209 PRKG2Q13237 762 aa13.48□□□□□ -0.25
UPF1-205ENST00000598209 CTBP1Q13363 440 aa13.48□□□□□ -0.25
UPF1-205ENST00000598209 CRYMQ14894 314 aa13.48□□□□□ -0.25
UPF1-205ENST00000598209 TMED2Q15363 201 aa13.48□□□□□ -0.25
UPF1-205ENST00000598209 ZNF789Q5FWF6 425 aa13.48□□□□□ -0.25
UPF1-205ENST00000598209 TMEM164Q5U3C3 297 aa13.48□□□□□ -0.25
UPF1-205ENST00000598209 CACHD1Q5VU97 1274 aa13.48□□□□□ -0.25
UPF1-205ENST00000598209 ARMC6Q6NXE6 501 aa13.48□□□□□ -0.25
UPF1-205ENST00000598209 ZNF572Q7Z3I7 529 aaPredicted RBP13.48□□□□□ -0.25
UPF1-205ENST00000598209 PRSS42Q7Z5A4 293 aa13.48□□□□□ -0.25
UPF1-205ENST00000598209 KCNMB4Q86W47 210 aa13.48□□□□□ -0.25
UPF1-205ENST00000598209 VRK3Q8IV63 474 aa13.48□□□□□ -0.25
UPF1-205ENST00000598209 IGDCC3Q8IVU1 814 aa13.48□□□□□ -0.25
UPF1-205ENST00000598209 DENND6AQ8IWF6 608 aa13.48□□□□□ -0.25
UPF1-205ENST00000598209 LMNTD2Q8IXW0 634 aa13.48□□□□□ -0.25
UPF1-205ENST00000598209 BMPERQ8N8U9 685 aa13.48□□□□□ -0.25
UPF1-205ENST00000598209 OR4E2Q8NGC2 313 aa13.48□□□□□ -0.25
UPF1-205ENST00000598209 OR52E1Q8NGJ3 308 aa13.48□□□□□ -0.25
UPF1-205ENST00000598209 OR5AR1Q8NGP9 310 aa13.48□□□□□ -0.25
UPF1-205ENST00000598209 CALML6Q8TD86 181 aa13.48□□□□□ -0.25
UPF1-205ENST00000598209 KCNE4Q8WWG9 221 aa13.48□□□□□ -0.25
UPF1-205ENST00000598209 LCN9Q8WX39 176 aa13.48□□□□□ -0.25
UPF1-205ENST00000598209 ART4Q93070 314 aa13.48□□□□□ -0.25
UPF1-205ENST00000598209 TAAR9Q96RI9 348 aa13.48□□□□□ -0.25
UPF1-205ENST00000598209 NAT9Q9BTE0 207 aa13.48□□□□□ -0.25
UPF1-205ENST00000598209 TRIT1Q9H3H1 467 aaKnown RBP13.48□□□□□ -0.25
UPF1-205ENST00000598209 FBXO6Q9NRD1 293 aaPredicted RBP13.48□□□□□ -0.25
UPF1-205ENST00000598209 INTS10Q9NVR2 710 aaKnown RBP13.48□□□□□ -0.25
UPF1-205ENST00000598209 HRASLS2Q9NWW9 162 aa13.48□□□□□ -0.25
UPF1-205ENST00000598209 SLC39A1Q9NY26 324 aa13.48□□□□□ -0.25
UPF1-205ENST00000598209 CDC23Q9UJX2 597 aa13.48□□□□□ -0.25
UPF1-205ENST00000598209 CDYLQ9Y232 598 aa13.48□□□□□ -0.25
UPF1-205ENST00000598209 KMT2BQ9UMN6 2715 aaPredicted RBP13.48□□□□□ -0.25
UPF1-205ENST00000598209 H3BMM5 538 aa13.47□□□□□ -0.25
UPF1-205ENST00000598209 NDC80O14777 642 aa13.47□□□□□ -0.25
UPF1-205ENST00000598209 TP73O15350 636 aa13.47□□□□□ -0.25
UPF1-205ENST00000598209 NIPSNAP2O75323 286 aa13.47□□□□□ -0.25
UPF1-205ENST00000598209 SNRNP200O75643 2136 aaKnown RBP13.47□□□□□ -0.25
UPF1-205ENST00000598209 URI1O94763 535 aaPredicted RBP13.47□□□□□ -0.25
UPF1-205ENST00000598209 SLCO2B1O94956 709 aa13.47□□□□□ -0.25
UPF1-205ENST00000598209 PKMP14618 531 aaKnown RBP13.47□□□□□ -0.25
UPF1-205ENST00000598209 POLR2CP19387 275 aaPredicted RBP13.47□□□□□ -0.25
UPF1-205ENST00000598209 ITPKBP27987 946 aa13.47□□□□□ -0.25
UPF1-205ENST00000598209 ELK3P41970 407 aa13.47□□□□□ -0.25
UPF1-205ENST00000598209 SLC1A2P43004 574 aa13.47□□□□□ -0.25
UPF1-205ENST00000598209 SEPHS1P49903 392 aa13.47□□□□□ -0.25
UPF1-205ENST00000598209 CKAP4Q07065 602 aaKnown RBP13.47□□□□□ -0.25
UPF1-205ENST00000598209 HIF1AQ16665 826 aa13.47□□□□□ -0.25
UPF1-205ENST00000598209 HSP90AA5PQ58FG0 334 aa13.47□□□□□ -0.25
UPF1-205ENST00000598209 SPANXN3Q5MJ09 141 aa13.47□□□□□ -0.25
UPF1-205ENST00000598209 HP1BP3Q5SSJ5 553 aaPredicted RBP13.47□□□□□ -0.25
UPF1-205ENST00000598209 OTOAQ7RTW8 1153 aa13.47□□□□□ -0.25
UPF1-205ENST00000598209 SPACA3Q8IXA5 215 aa13.47□□□□□ -0.25
UPF1-205ENST00000598209 TBC1D21Q8IYX1 336 aa13.47□□□□□ -0.25
UPF1-205ENST00000598209 UNC5BQ8IZJ1 945 aa13.47□□□□□ -0.25
UPF1-205ENST00000598209 BBOF1Q8ND07 529 aa13.47□□□□□ -0.25
UPF1-205ENST00000598209 HNRNPLLQ8WVV9 542 aaKnown RBP13.47□□□□□ -0.25
UPF1-205ENST00000598209 ZNF592Q92610 1267 aa13.47□□□□□ -0.25
UPF1-205ENST00000598209 PMEPA1Q969W9 287 aa13.47□□□□□ -0.25
UPF1-205ENST00000598209 TRIM44Q96DX7 344 aaPredicted RBP13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms