RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 ANKRD20A2Q5SQ80 823 aa12.17□□□□□ -0.46
TRIM28-212ENST00000597995 ANKRD20A1Q5TYW2 823 aa12.17□□□□□ -0.46
TRIM28-212ENST00000597995 ANKRD20A3Q5VUR7 823 aa12.17□□□□□ -0.46
TRIM28-212ENST00000597995 RANBP10Q6VN20 620 aa12.17□□□□□ -0.46
TRIM28-212ENST00000597995 ENDOVQ8N8Q3 282 aaKnown RBP12.17□□□□□ -0.46
TRIM28-212ENST00000597995 Q8NA96 180 aa12.17□□□□□ -0.46
TRIM28-212ENST00000597995 FDCSPQ8NFU4 85 aa12.17□□□□□ -0.46
TRIM28-212ENST00000597995 CCDC110Q8TBZ0 833 aa12.17□□□□□ -0.46
TRIM28-212ENST00000597995 BLOC1S5Q8TDH9 187 aa12.17□□□□□ -0.46
TRIM28-212ENST00000597995 CCM2Q9BSQ5 444 aa12.17□□□□□ -0.46
TRIM28-212ENST00000597995 SLC29A3Q9BZD2 475 aa12.17□□□□□ -0.46
TRIM28-212ENST00000597995 SLAMF7Q9NQ25 335 aa12.17□□□□□ -0.46
TRIM28-212ENST00000597995 SOHLH2Q9NX45 425 aa12.17□□□□□ -0.46
TRIM28-212ENST00000597995 AMFRQ9UKV5 643 aa12.17□□□□□ -0.46
TRIM28-212ENST00000597995 POMT2Q9UKY4 750 aa12.17□□□□□ -0.46
TRIM28-212ENST00000597995 HEBP2Q9Y5Z4 205 aa12.17□□□□□ -0.46
TRIM28-212ENST00000597995 CAPN6Q9Y6Q1 641 aa12.17□□□□□ -0.46
TRIM28-212ENST00000597995 HIVEP3Q5T1R4 2406 aa12.17□□□□□ -0.46
TRIM28-212ENST00000597995 TCRBV7S2A1N4TA0A589 114 aa12.16□□□□□ -0.46
TRIM28-212ENST00000597995 SLC9B1P1A6NJY1 282 aa12.16□□□□□ -0.46
TRIM28-212ENST00000597995 TCP11X1B4DZS4 312 aa12.16□□□□□ -0.46
TRIM28-212ENST00000597995 STX7O15400 261 aaKnown RBP12.16□□□□□ -0.46
TRIM28-212ENST00000597995 KCNN4O15554 427 aa12.16□□□□□ -0.46
TRIM28-212ENST00000597995 CAPN1P07384 714 aa12.16□□□□□ -0.46
TRIM28-212ENST00000597995 SLC35G4P0C7Q5 338 aa12.16□□□□□ -0.46
TRIM28-212ENST00000597995 CDH3P22223 829 aa12.16□□□□□ -0.46
TRIM28-212ENST00000597995 PBLDP30039 288 aaPredicted RBP12.16□□□□□ -0.46
TRIM28-212ENST00000597995 AKT1P31749 480 aa12.16□□□□□ -0.46
TRIM28-212ENST00000597995 KLF1Q13351 362 aaPredicted RBP12.16□□□□□ -0.46
TRIM28-212ENST00000597995 GSE1Q14687 1217 aa12.16□□□□□ -0.46
TRIM28-212ENST00000597995 CCDC181Q5TID7 509 aa12.16□□□□□ -0.46
TRIM28-212ENST00000597995 DENND5AQ6IQ26 1287 aa12.16□□□□□ -0.46
TRIM28-212ENST00000597995 LCN10Q6JVE6 187 aa12.16□□□□□ -0.46
TRIM28-212ENST00000597995 DUS1LQ6P1R4 473 aaKnown RBP12.16□□□□□ -0.46
TRIM28-212ENST00000597995 PEX26Q7Z412 305 aa12.16□□□□□ -0.46
TRIM28-212ENST00000597995 CDKL3Q8IVW4 592 aaPredicted RBP12.16□□□□□ -0.46
TRIM28-212ENST00000597995 KLHDC8BQ8IXV7 354 aa12.16□□□□□ -0.46
TRIM28-212ENST00000597995 RBMXL3Q8N7X1 1067 aaKnown RBP12.16□□□□□ -0.46
TRIM28-212ENST00000597995 ACVR1CQ8NER5 493 aa12.16□□□□□ -0.46
TRIM28-212ENST00000597995 SPDYE1Q8NFV5 336 aaPredicted RBP12.16□□□□□ -0.46
TRIM28-212ENST00000597995 OR4E2Q8NGC2 313 aa12.16□□□□□ -0.46
TRIM28-212ENST00000597995 PNPLA2Q96AD5 504 aa12.16□□□□□ -0.46
TRIM28-212ENST00000597995 CLIP3Q96DZ5 547 aa12.16□□□□□ -0.46
TRIM28-212ENST00000597995 SMAD5Q99717 465 aaKnown RBP12.16□□□□□ -0.46
TRIM28-212ENST00000597995 DPH2Q9BQC3 489 aaPredicted RBP12.16□□□□□ -0.46
TRIM28-212ENST00000597995 APOL2Q9BQE5 337 aa12.16□□□□□ -0.46
TRIM28-212ENST00000597995 FICDQ9BVA6 458 aa12.16□□□□□ -0.46
TRIM28-212ENST00000597995 NUDT9Q9BW91 350 aa12.16□□□□□ -0.46
TRIM28-212ENST00000597995 PCMTD2Q9NV79 361 aa12.16□□□□□ -0.46
TRIM28-212ENST00000597995 GPR83Q9NYM4 423 aa12.16□□□□□ -0.46
TRIM28-212ENST00000597995 C5AR2Q9P296 337 aa12.16□□□□□ -0.46
TRIM28-212ENST00000597995 SERTAD3Q9UJW9 196 aa12.16□□□□□ -0.46
TRIM28-212ENST00000597995 R3HDM2Q9Y2K5 976 aaKnown RBP12.16□□□□□ -0.46
TRIM28-212ENST00000597995 ARL5AQ9Y689 179 aa12.16□□□□□ -0.46
TRIM28-212ENST00000597995 CREBBPQ92793 2442 aa12.16□□□□□ -0.46
TRIM28-212ENST00000597995 MYO9AB2RTY4 2548 aa12.15□□□□□ -0.46
TRIM28-212ENST00000597995 CACNA1DQ01668 2161 aa12.15□□□□□ -0.46
TRIM28-212ENST00000597995 C17orf113A0A1B0GUU1 675 aa12.15□□□□□ -0.46
TRIM28-212ENST00000597995 WIPF3A6NGB9 483 aa12.15□□□□□ -0.46
TRIM28-212ENST00000597995 ZNF185O15231 689 aa12.15□□□□□ -0.46
TRIM28-212ENST00000597995 MAP3K7O43318 606 aa12.15□□□□□ -0.46
TRIM28-212ENST00000597995 TJP3O95049 919 aa12.15□□□□□ -0.46
TRIM28-212ENST00000597995 PRAMEF1O95521 474 aa12.15□□□□□ -0.46
TRIM28-212ENST00000597995 POLR2CP19387 275 aaPredicted RBP12.15□□□□□ -0.46
TRIM28-212ENST00000597995 PREPP48147 710 aa12.15□□□□□ -0.46
TRIM28-212ENST00000597995 GEMP55040 296 aa12.15□□□□□ -0.46
TRIM28-212ENST00000597995 ITGA1P56199 1179 aa12.15□□□□□ -0.46
TRIM28-212ENST00000597995 KIF5AQ12840 1032 aa12.15□□□□□ -0.46
TRIM28-212ENST00000597995 ABRQ12979 859 aa12.15□□□□□ -0.46
TRIM28-212ENST00000597995 KRT33BQ14525 404 aa12.15□□□□□ -0.46
TRIM28-212ENST00000597995 EIF2S3LQ2VIR3 472 aaKnown RBP12.15□□□□□ -0.46
TRIM28-212ENST00000597995 ZNF789Q5FWF6 425 aa12.15□□□□□ -0.46
TRIM28-212ENST00000597995 PRAMEF17Q5VTA0 474 aa12.15□□□□□ -0.46
TRIM28-212ENST00000597995 SLC6A19Q695T7 634 aa12.15□□□□□ -0.46
TRIM28-212ENST00000597995 DARS2Q6PI48 645 aaKnown RBP12.15□□□□□ -0.46
TRIM28-212ENST00000597995 FBXO38Q6PIJ6 1188 aa12.15□□□□□ -0.46
TRIM28-212ENST00000597995 FAM198BQ6UWH4 519 aa12.15□□□□□ -0.46
TRIM28-212ENST00000597995 MICALCLQ6ZW33 695 aa12.15□□□□□ -0.46
TRIM28-212ENST00000597995 DET1Q7L5Y6 550 aa12.15□□□□□ -0.46
TRIM28-212ENST00000597995 SYTL1Q8IYJ3 562 aa12.15□□□□□ -0.46
TRIM28-212ENST00000597995 CFAP206Q8IYR0 622 aa12.15□□□□□ -0.46
TRIM28-212ENST00000597995 ZBTB2Q8N680 514 aa12.15□□□□□ -0.46
TRIM28-212ENST00000597995 HES6Q96HZ4 224 aa12.15□□□□□ -0.46
TRIM28-212ENST00000597995 RMDN2Q96LZ7 410 aa12.15□□□□□ -0.46
TRIM28-212ENST00000597995 PPM1MQ96MI6 270 aa12.15□□□□□ -0.46
TRIM28-212ENST00000597995 SPATA13Q96N96 652 aa12.15□□□□□ -0.46
TRIM28-212ENST00000597995 C19orf43Q9BQ61 176 aa12.15□□□□□ -0.46
TRIM28-212ENST00000597995 DHRS4Q9BTZ2 278 aa12.15□□□□□ -0.46
TRIM28-212ENST00000597995 FSD1LQ9BXM9 530 aa12.15□□□□□ -0.46
TRIM28-212ENST00000597995 TLR10Q9BXR5 811 aa12.15□□□□□ -0.46
TRIM28-212ENST00000597995 SRMSQ9H3Y6 488 aa12.15□□□□□ -0.46
TRIM28-212ENST00000597995 ASB8Q9H765 288 aa12.15□□□□□ -0.46
TRIM28-212ENST00000597995 ACTR5Q9H9F9 607 aaPredicted RBP12.15□□□□□ -0.46
TRIM28-212ENST00000597995 CASS4Q9NQ75 786 aa12.15□□□□□ -0.46
TRIM28-212ENST00000597995 C5orf60A6NFR6 353 aa12.14□□□□□ -0.47
TRIM28-212ENST00000597995 C2orf81A6NN90 581 aa12.14□□□□□ -0.47
TRIM28-212ENST00000597995 AGAP14A8MT82 685 aa12.14□□□□□ -0.47
TRIM28-212ENST00000597995 TMEM150CB9EJG8 249 aa12.14□□□□□ -0.47
TRIM28-212ENST00000597995 SGTAO43765 313 aa12.14□□□□□ -0.47
TRIM28-212ENST00000597995 ANXA9O76027 345 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms