RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	PCDHA3	Q9Y5H8	950 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	HEBP2	Q9Y5Z4	205 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	DUSP10	Q9Y6W6	482 aa		10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	USP9Y	O00507	2555 aa	Predicted RBP	10.23	□□□□□ -0.77
LSM4-205	ENST00000597776	IGLV3-16	A0A075B6K0	115 aa		10.22	□□□□□ -0.77
LSM4-205	ENST00000597776	CFAP99	D6REC4	459 aa		10.22	□□□□□ -0.77
LSM4-205	ENST00000597776	LDB2	O43679	373 aa		10.22	□□□□□ -0.77
LSM4-205	ENST00000597776	STK10	O94804	968 aa	Known RBP	10.22	□□□□□ -0.77
LSM4-205	ENST00000597776	KLK3	P07288	261 aa	Predicted RBP	10.22	□□□□□ -0.77
LSM4-205	ENST00000597776	CAPN1	P07384	714 aa		10.22	□□□□□ -0.77
LSM4-205	ENST00000597776	PYGM	P11217	842 aa		10.22	□□□□□ -0.77
LSM4-205	ENST00000597776	CYP2A7	P20853	494 aa		10.22	□□□□□ -0.77
LSM4-205	ENST00000597776	GNLY	P22749	145 aa		10.22	□□□□□ -0.77
LSM4-205	ENST00000597776	PRDX3	P30048	256 aa	Known RBP	10.22	□□□□□ -0.77
LSM4-205	ENST00000597776	MC4R	P32245	332 aa		10.22	□□□□□ -0.77
LSM4-205	ENST00000597776	RORA	P35398	523 aa		10.22	□□□□□ -0.77
LSM4-205	ENST00000597776	GSDMD	P57764	484 aa		10.22	□□□□□ -0.77
LSM4-205	ENST00000597776	PRKG2	Q13237	762 aa		10.22	□□□□□ -0.77
LSM4-205	ENST00000597776	ZNF658B	Q4V348	819 aa	Predicted RBP	10.22	□□□□□ -0.77
LSM4-205	ENST00000597776	ZRANB3	Q5FWF4	1079 aa		10.22	□□□□□ -0.77
LSM4-205	ENST00000597776	FAM198B	Q6UWH4	519 aa		10.22	□□□□□ -0.77
LSM4-205	ENST00000597776	SNX20	Q7Z614	316 aa		10.22	□□□□□ -0.77
LSM4-205	ENST00000597776	SERPINA9	Q86WD7	417 aa		10.22	□□□□□ -0.77
LSM4-205	ENST00000597776	CLDN19	Q8N6F1	224 aa		10.22	□□□□□ -0.77
LSM4-205	ENST00000597776	OR52E1	Q8NGJ3	308 aa		10.22	□□□□□ -0.77
LSM4-205	ENST00000597776	CPT1C	Q8TCG5	803 aa		10.22	□□□□□ -0.77
LSM4-205	ENST00000597776	ADAMTS17	Q8TE56	1095 aa		10.22	□□□□□ -0.77
LSM4-205	ENST00000597776	CPT1B	Q92523	772 aa		10.22	□□□□□ -0.77
LSM4-205	ENST00000597776	ALG3	Q92685	438 aa		10.22	□□□□□ -0.77
LSM4-205	ENST00000597776	LRFN5	Q96NI6	719 aa		10.22	□□□□□ -0.77
LSM4-205	ENST00000597776	PSMG3-AS1	Q96PY0	264 aa		10.22	□□□□□ -0.77
LSM4-205	ENST00000597776	FERMT1	Q9BQL6	677 aa		10.22	□□□□□ -0.77
LSM4-205	ENST00000597776	ACTR5	Q9H9F9	607 aa	Predicted RBP	10.22	□□□□□ -0.77
LSM4-205	ENST00000597776	FANCE	Q9HB96	536 aa		10.22	□□□□□ -0.77
LSM4-205	ENST00000597776	C1GALT1	Q9NS00	363 aa		10.22	□□□□□ -0.77
LSM4-205	ENST00000597776	PCMTD2	Q9NV79	361 aa		10.22	□□□□□ -0.77
LSM4-205	ENST00000597776	PIH1D1	Q9NWS0	290 aa	Known RBP	10.22	□□□□□ -0.77
LSM4-205	ENST00000597776	ZDHHC3	Q9NYG2	299 aa		10.22	□□□□□ -0.77
LSM4-205	ENST00000597776	LUZP4	Q9P127	313 aa		10.22	□□□□□ -0.77
LSM4-205	ENST00000597776	TCFL5	Q9UL49	500 aa		10.22	□□□□□ -0.77
LSM4-205	ENST00000597776	SNX7	Q9UNH6	387 aa		10.22	□□□□□ -0.77
LSM4-205	ENST00000597776	PCDHGA9	Q9Y5G4	932 aa	Known RBP	10.22	□□□□□ -0.77
LSM4-205	ENST00000597776	PCSK5	Q92824	1860 aa		10.21	□□□□□ -0.77
LSM4-205	ENST00000597776	CCDC78	A2IDD5	438 aa		10.21	□□□□□ -0.77
LSM4-205	ENST00000597776	SOWAHD	A6NJG2	315 aa		10.21	□□□□□ -0.77
LSM4-205	ENST00000597776		A6NL46	340 aa		10.21	□□□□□ -0.77
LSM4-205	ENST00000597776	MATN2	O00339	956 aa		10.21	□□□□□ -0.77
LSM4-205	ENST00000597776	IFRD1	O00458	451 aa	Predicted RBP	10.21	□□□□□ -0.77
LSM4-205	ENST00000597776	VPS4B	O75351	444 aa		10.21	□□□□□ -0.77
LSM4-205	ENST00000597776	RAB40AL	P0C0E4	278 aa		10.21	□□□□□ -0.77
LSM4-205	ENST00000597776	ATXN8OS	P0DMR3	200 aa		10.21	□□□□□ -0.77
LSM4-205	ENST00000597776	TPH1	P17752	444 aa		10.21	□□□□□ -0.77
LSM4-205	ENST00000597776	ACRV1	P26436	265 aa		10.21	□□□□□ -0.77
LSM4-205	ENST00000597776	PTPN7	P35236	360 aa		10.21	□□□□□ -0.77
LSM4-205	ENST00000597776	CYLC1	P35663	651 aa	Predicted RBP	10.21	□□□□□ -0.77
LSM4-205	ENST00000597776	HADHA	P40939	763 aa		10.21	□□□□□ -0.77
LSM4-205	ENST00000597776	ITGA1	P56199	1179 aa		10.21	□□□□□ -0.77
LSM4-205	ENST00000597776	SKOR2	Q2VWA4	1001 aa	Predicted RBP	10.21	□□□□□ -0.77
LSM4-205	ENST00000597776	PRR30	Q53SZ7	412 aa	Predicted RBP	10.21	□□□□□ -0.77
LSM4-205	ENST00000597776	HIST2H2BC	Q6DN03	193 aa		10.21	□□□□□ -0.77
LSM4-205	ENST00000597776	TRIM73	Q86UV7	250 aa		10.21	□□□□□ -0.77
LSM4-205	ENST00000597776	PIANP	Q8IYJ0	282 aa		10.21	□□□□□ -0.77
LSM4-205	ENST00000597776	SYTL1	Q8IYJ3	562 aa		10.21	□□□□□ -0.77
LSM4-205	ENST00000597776	CCDC170	Q8IYT3	715 aa		10.21	□□□□□ -0.77
LSM4-205	ENST00000597776	ADGRF3	Q8IZF5	1079 aa		10.21	□□□□□ -0.77
LSM4-205	ENST00000597776	EFCAB3	Q8N7B9	438 aa		10.21	□□□□□ -0.77
LSM4-205	ENST00000597776	FDCSP	Q8NFU4	85 aa		10.21	□□□□□ -0.77
LSM4-205	ENST00000597776	TRAPPC9	Q96Q05	1148 aa		10.21	□□□□□ -0.77
LSM4-205	ENST00000597776	NLN	Q9BYT8	704 aa		10.21	□□□□□ -0.77
LSM4-205	ENST00000597776	PITPNM3	Q9BZ71	974 aa		10.21	□□□□□ -0.77
LSM4-205	ENST00000597776	TRIM5	Q9C035	493 aa		10.21	□□□□□ -0.77
LSM4-205	ENST00000597776	ARNT2	Q9HBZ2	717 aa		10.21	□□□□□ -0.77
LSM4-205	ENST00000597776	MLXIPL	Q9NP71	852 aa		10.21	□□□□□ -0.77
LSM4-205	ENST00000597776	ACTR10	Q9NZ32	417 aa		10.21	□□□□□ -0.77
LSM4-205	ENST00000597776	VPS4A	Q9UN37	437 aa		10.21	□□□□□ -0.77
LSM4-205	ENST00000597776	EFR3B	Q9Y2G0	817 aa		10.21	□□□□□ -0.77
LSM4-205	ENST00000597776	TRBV5-4	A0A0C4DH59	114 aa		10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	C17orf113	A0A1B0GUU1	675 aa		10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	C2orf74	A8MZ97	194 aa		10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	ZNF185	O15231	689 aa		10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	ZNF749	O43361	778 aa		10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	CEACAM4	O75871	244 aa		10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	SORBS2	O94875	1100 aa	Known RBP	10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	TMEM63A	O94886	807 aa		10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	METTL18	O95568	372 aa		10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	VAV2	P52735	878 aa		10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	NAP1L1	P55209	391 aa	Known RBP	10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	RWDD2B	P57060	319 aa		10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	RAPSN	Q13702	412 aa		10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	ATP1A4	Q13733	1029 aa		10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	BOP1	Q14137	746 aa	Known RBP	10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	POU6F1	Q14863	301 aa		10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	NCF4	Q15080	339 aa		10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	DBN1	Q16643	649 aa		10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	DEFB110	Q30KQ9	67 aa		10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	GPR33	Q49SQ1	333 aa		10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	PAPD7	Q5XG87	772 aa	Known RBP	10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	KCTD11	Q693B1	232 aa		10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	SARM1	Q6SZW1	724 aa		10.2	□□□□□ -0.78
LSM4-205	ENST00000597776	NAPRT	Q6XQN6	538 aa		10.2	□□□□□ -0.78

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