RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 ZNF789Q5FWF6 425 aa23.23■■□□□ 1.31
LSM4-202ENST00000593564 LCN10Q6JVE6 187 aa23.23■■□□□ 1.31
LSM4-202ENST00000593564 DARS2Q6PI48 645 aaKnown RBP23.23■■□□□ 1.31
LSM4-202ENST00000593564 KLHDC8BQ8IXV7 354 aa23.23■■□□□ 1.31
LSM4-202ENST00000593564 ENDOVQ8N8Q3 282 aaKnown RBP23.23■■□□□ 1.31
LSM4-202ENST00000593564 CCDC110Q8TBZ0 833 aa23.23■■□□□ 1.31
LSM4-202ENST00000593564 PSMG3-AS1Q96PY0 264 aa23.23■■□□□ 1.31
LSM4-202ENST00000593564 FERD3LQ96RJ6 166 aa23.23■■□□□ 1.31
LSM4-202ENST00000593564 NLNQ9BYT8 704 aa23.23■■□□□ 1.31
LSM4-202ENST00000593564 PITPNM3Q9BZ71 974 aa23.23■■□□□ 1.31
LSM4-202ENST00000593564 TFB2MQ9H5Q4 396 aaKnown RBP23.23■■□□□ 1.31
LSM4-202ENST00000593564 FAM96AQ9H5X1 160 aa23.23■■□□□ 1.31
LSM4-202ENST00000593564 VPS37BQ9H9H4 285 aa23.23■■□□□ 1.31
LSM4-202ENST00000593564 ZDHHC3Q9NYG2 299 aa23.23■■□□□ 1.31
LSM4-202ENST00000593564 SNX7Q9UNH6 387 aa23.23■■□□□ 1.31
LSM4-202ENST00000593564 TMEM150CB9EJG8 249 aa23.22■■□□□ 1.31
LSM4-202ENST00000593564 IFRD1O00458 451 aaPredicted RBP23.22■■□□□ 1.31
LSM4-202ENST00000593564 BTN3A3O00478 584 aa23.22■■□□□ 1.31
LSM4-202ENST00000593564 LDB2O43679 373 aa23.22■■□□□ 1.31
LSM4-202ENST00000593564 PTGIRP43119 386 aa23.22■■□□□ 1.31
LSM4-202ENST00000593564 PREPP48147 710 aa23.22■■□□□ 1.31
LSM4-202ENST00000593564 CD151P48509 253 aa23.22■■□□□ 1.31
LSM4-202ENST00000593564 CCL11P51671 97 aa23.22■■□□□ 1.31
LSM4-202ENST00000593564 EFCAB3Q8N7B9 438 aa23.22■■□□□ 1.31
LSM4-202ENST00000593564 OR1L3Q8NH93 324 aa23.22■■□□□ 1.31
LSM4-202ENST00000593564 LRRC45Q96CN5 670 aa23.22■■□□□ 1.31
LSM4-202ENST00000593564 CLIP3Q96DZ5 547 aa23.22■■□□□ 1.31
LSM4-202ENST00000593564 CALR3Q96L12 384 aaKnown RBP23.22■■□□□ 1.31
LSM4-202ENST00000593564 FAM118BQ9BPY3 351 aa23.22■■□□□ 1.31
LSM4-202ENST00000593564 PCMTD2Q9NV79 361 aa23.22■■□□□ 1.31
LSM4-202ENST00000593564 TCFL5Q9UL49 500 aa23.22■■□□□ 1.31
LSM4-202ENST00000593564 SPTBN1Q01082 2364 aaKnown RBP23.22■■□□□ 1.31
LSM4-202ENST00000593564 SPTBP11277 2137 aa23.21■■□□□ 1.31
LSM4-202ENST00000593564 MED13Q9UHV7 2174 aa23.21■■□□□ 1.31
LSM4-202ENST00000593564 TRBV5-4A0A0C4DH59 114 aa23.21■■□□□ 1.31
LSM4-202ENST00000593564 BTN3A1O00481 513 aa23.21■■□□□ 1.31
LSM4-202ENST00000593564 CCL22O00626 93 aa23.21■■□□□ 1.31
LSM4-202ENST00000593564 DDX3YO15523 660 aaKnown RBP23.21■■□□□ 1.31
LSM4-202ENST00000593564 VPS4BO75351 444 aa23.21■■□□□ 1.31
LSM4-202ENST00000593564 ZNF189O75820 626 aaPredicted RBP23.21■■□□□ 1.31
LSM4-202ENST00000593564 CEACAM4O75871 244 aa23.21■■□□□ 1.31
LSM4-202ENST00000593564 ST6GAL1P15907 406 aa23.21■■□□□ 1.31
LSM4-202ENST00000593564 MC4RP32245 332 aa23.21■■□□□ 1.31
LSM4-202ENST00000593564 CYLC1P35663 651 aaPredicted RBP23.21■■□□□ 1.31
LSM4-202ENST00000593564 RPA4Q13156 261 aa23.21■■□□□ 1.31
LSM4-202ENST00000593564 SARM1Q6SZW1 724 aa23.21■■□□□ 1.31
LSM4-202ENST00000593564 SYTL1Q8IYJ3 562 aa23.21■■□□□ 1.31
LSM4-202ENST00000593564 GALNT11Q8NCW6 608 aa23.21■■□□□ 1.31
LSM4-202ENST00000593564 CPT1CQ8TCG5 803 aa23.21■■□□□ 1.31
LSM4-202ENST00000593564 MVB12BQ9H7P6 319 aa23.21■■□□□ 1.31
LSM4-202ENST00000593564 ACTR5Q9H9F9 607 aaPredicted RBP23.21■■□□□ 1.31
LSM4-202ENST00000593564 VPS4AQ9UN37 437 aa23.21■■□□□ 1.31
LSM4-202ENST00000593564 PCDHGB7Q9Y5F8 929 aa23.21■■□□□ 1.31
LSM4-202ENST00000593564 H7C0S8 307 aa23.2■■□□□ 1.3
LSM4-202ENST00000593564 MAP3K7O43318 606 aa23.2■■□□□ 1.3
LSM4-202ENST00000593564 CAPN1P07384 714 aa23.2■■□□□ 1.3
LSM4-202ENST00000593564 CYP2A7P20853 494 aa23.2■■□□□ 1.3
LSM4-202ENST00000593564 ACRV1P26436 265 aa23.2■■□□□ 1.3
LSM4-202ENST00000593564 UQCRFS1P47985 274 aa23.2■■□□□ 1.3
LSM4-202ENST00000593564 SPARCL1Q14515 664 aa23.2■■□□□ 1.3
LSM4-202ENST00000593564 NADK2Q4G0N4 442 aa23.2■■□□□ 1.3
LSM4-202ENST00000593564 FAM198BQ6UWH4 519 aa23.2■■□□□ 1.3
LSM4-202ENST00000593564 OR52E1Q8NGJ3 308 aa23.2■■□□□ 1.3
LSM4-202ENST00000593564 DNAJC1Q96KC8 554 aaKnown RBP23.2■■□□□ 1.3
LSM4-202ENST00000593564 TRAPPC9Q96Q05 1148 aa23.2■■□□□ 1.3
LSM4-202ENST00000593564 SERTAD3Q9UJW9 196 aa23.2■■□□□ 1.3
LSM4-202ENST00000593564 ZNF451Q9Y4E5 1061 aa23.2■■□□□ 1.3
LSM4-202ENST00000593564 SEC16AO15027 2179 aa23.2■■□□□ 1.3
LSM4-202ENST00000593564 TNRC6AQ8NDV7 1962 aaKnown RBP23.2■■□□□ 1.3
LSM4-202ENST00000593564 BLACEA4D250 179 aa23.19■■□□□ 1.3
LSM4-202ENST00000593564 SORBS2O94875 1100 aaKnown RBP23.19■■□□□ 1.3
LSM4-202ENST00000593564 TMEM63AO94886 807 aa23.19■■□□□ 1.3
LSM4-202ENST00000593564 TJP3O95049 919 aa23.19■■□□□ 1.3
LSM4-202ENST00000593564 GSTM1P09488 218 aa23.19■■□□□ 1.3
LSM4-202ENST00000593564 PDHA2P29803 388 aa23.19■■□□□ 1.3
LSM4-202ENST00000593564 LMAN1P49257 510 aa23.19■■□□□ 1.3
LSM4-202ENST00000593564 CDKN1CP49918 316 aaPredicted RBP23.19■■□□□ 1.3
LSM4-202ENST00000593564 VAV2P52735 878 aa23.19■■□□□ 1.3
LSM4-202ENST00000593564 RWDD2BP57060 319 aa23.19■■□□□ 1.3
LSM4-202ENST00000593564 GSTM4Q03013 218 aa23.19■■□□□ 1.3
LSM4-202ENST00000593564 BOP1Q14137 746 aaKnown RBP23.19■■□□□ 1.3
LSM4-202ENST00000593564 ZNF449Q6P9G9 518 aa23.19■■□□□ 1.3
LSM4-202ENST00000593564 SERPINA9Q86WD7 417 aa23.19■■□□□ 1.3
LSM4-202ENST00000593564 AMIGO1Q86WK6 493 aa23.19■■□□□ 1.3
LSM4-202ENST00000593564 NRTNQ99748 197 aa23.19■■□□□ 1.3
LSM4-202ENST00000593564 RCCD1A6NED2 376 aa23.18■■□□□ 1.3
LSM4-202ENST00000593564 C2orf74A8MZ97 194 aa23.18■■□□□ 1.3
LSM4-202ENST00000593564 CETN2P41208 172 aa23.18■■□□□ 1.3
LSM4-202ENST00000593564 ZRANB3Q5FWF4 1079 aa23.18■■□□□ 1.3
LSM4-202ENST00000593564 KCTD11Q693B1 232 aa23.18■■□□□ 1.3
LSM4-202ENST00000593564 ADGRF3Q8IZF5 1079 aa23.18■■□□□ 1.3
LSM4-202ENST00000593564 PHC3Q8NDX5 983 aa23.18■■□□□ 1.3
LSM4-202ENST00000593564 TFGQ92734 400 aaPredicted RBP23.18■■□□□ 1.3
LSM4-202ENST00000593564 DPH2Q9BQC3 489 aaPredicted RBP23.18■■□□□ 1.3
LSM4-202ENST00000593564 HGH1Q9BTY7 390 aa23.18■■□□□ 1.3
LSM4-202ENST00000593564 TRIM5Q9C035 493 aa23.18■■□□□ 1.3
LSM4-202ENST00000593564 NLE1Q9NVX2 485 aaPredicted RBP23.18■■□□□ 1.3
LSM4-202ENST00000593564 ACTR10Q9NZ32 417 aa23.18■■□□□ 1.3
LSM4-202ENST00000593564 MAP4K5Q9Y4K4 846 aa23.18■■□□□ 1.3
LSM4-202ENST00000593564 E7EQ34 232 aa23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms