RNA–Protein interactions for RNA: ENST00000589823.6

VMP1-210, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 580 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-210ENST00000589823 NEK10Q6ZWH5 1172 aa13.31□□□□□ -0.28
VMP1-210ENST00000589823 CCDC91Q7Z6B0 441 aa13.31□□□□□ -0.28
VMP1-210ENST00000589823 CMC1Q7Z7K0 106 aa13.31□□□□□ -0.28
VMP1-210ENST00000589823 CROCCP2Q86T23 111 aa13.31□□□□□ -0.28
VMP1-210ENST00000589823 TBC1D1Q86TI0 1168 aaPredicted RBP13.31□□□□□ -0.28
VMP1-210ENST00000589823 IQCKQ8N0W5 287 aa13.31□□□□□ -0.28
VMP1-210ENST00000589823 SFRP1Q8N474 314 aa13.31□□□□□ -0.28
VMP1-210ENST00000589823 FAM181AQ8N9Y4 354 aa13.31□□□□□ -0.28
VMP1-210ENST00000589823 KYQ8NBH2 561 aa13.31□□□□□ -0.28
VMP1-210ENST00000589823 GPR156Q8NFN8 814 aa13.31□□□□□ -0.28
VMP1-210ENST00000589823 SPDYE1Q8NFV5 336 aaPredicted RBP13.31□□□□□ -0.28
VMP1-210ENST00000589823 CFAP61Q8NHU2 1237 aa13.31□□□□□ -0.28
VMP1-210ENST00000589823 NETO1Q8TDF5 533 aa13.31□□□□□ -0.28
VMP1-210ENST00000589823 SLC37A2Q8TED4 501 aa13.31□□□□□ -0.28
VMP1-210ENST00000589823 EEF1AKMT1Q8WVE0 214 aa13.31□□□□□ -0.28
VMP1-210ENST00000589823 PATE1Q8WXA2 126 aa13.31□□□□□ -0.28
VMP1-210ENST00000589823 TFGQ92734 400 aaPredicted RBP13.31□□□□□ -0.28
VMP1-210ENST00000589823 LINGO1Q96FE5 620 aa13.31□□□□□ -0.28
VMP1-210ENST00000589823 ZIM3Q96PE6 472 aa13.31□□□□□ -0.28
VMP1-210ENST00000589823 RUFY1Q96T51 708 aa13.31□□□□□ -0.28
VMP1-210ENST00000589823 INSM2Q96T92 566 aaPredicted RBP13.31□□□□□ -0.28
VMP1-210ENST00000589823 TMEM109Q9BVC6 243 aa13.31□□□□□ -0.28
VMP1-210ENST00000589823 SNX15Q9NRS6 342 aa13.31□□□□□ -0.28
VMP1-210ENST00000589823 POT1Q9NUX5 634 aa13.31□□□□□ -0.28
VMP1-210ENST00000589823 SCHIP1Q9P0W5 487 aaPredicted RBP13.31□□□□□ -0.28
VMP1-210ENST00000589823 CTNNAL1Q9UBT7 734 aa13.31□□□□□ -0.28
VMP1-210ENST00000589823 ASF1AQ9Y294 204 aa13.31□□□□□ -0.28
VMP1-210ENST00000589823 BTBD3Q9Y2F9 522 aa13.31□□□□□ -0.28
VMP1-210ENST00000589823 NFS1Q9Y697 457 aa13.31□□□□□ -0.28
VMP1-210ENST00000589823 COLEC10Q9Y6Z7 277 aa13.31□□□□□ -0.28
VMP1-210ENST00000589823 LAMA1P25391 3075 aa13.31□□□□□ -0.28
VMP1-210ENST00000589823 DNAH14Q0VDD8 3507 aa13.3□□□□□ -0.28
VMP1-210ENST00000589823 A0A087X1B8 175 aa13.3□□□□□ -0.28
VMP1-210ENST00000589823 MT-ND3P03897 115 aa13.3□□□□□ -0.28
VMP1-210ENST00000589823 ALDOAP04075 364 aaKnown RBP13.3□□□□□ -0.28
VMP1-210ENST00000589823 MPOP05164 745 aa13.3□□□□□ -0.28
VMP1-210ENST00000589823 XRCC1P18887 633 aaPredicted RBP13.3□□□□□ -0.28
VMP1-210ENST00000589823 KRT15P19012 456 aa13.3□□□□□ -0.28
VMP1-210ENST00000589823 ACADLP28330 430 aa13.3□□□□□ -0.28
VMP1-210ENST00000589823 SLC19A1P41440 591 aa13.3□□□□□ -0.28
VMP1-210ENST00000589823 DUSP3P51452 185 aaPredicted RBP13.3□□□□□ -0.28
VMP1-210ENST00000589823 MAZP56270 477 aaKnown RBP13.3□□□□□ -0.28
VMP1-210ENST00000589823 HHEXQ03014 270 aa13.3□□□□□ -0.28
VMP1-210ENST00000589823 TTC23LQ6PF05 361 aa13.3□□□□□ -0.28
VMP1-210ENST00000589823 UNC5DQ6UXZ4 953 aa13.3□□□□□ -0.28
VMP1-210ENST00000589823 TIFABQ6ZNK6 161 aa13.3□□□□□ -0.28
VMP1-210ENST00000589823 HDXQ7Z353 690 aa13.3□□□□□ -0.28
VMP1-210ENST00000589823 SFTPA2Q8IWL1 248 aa13.3□□□□□ -0.28
VMP1-210ENST00000589823 RBM12BQ8IXT5 1001 aaKnown RBP13.3□□□□□ -0.28
VMP1-210ENST00000589823 SLC35F3Q8IY50 421 aa13.3□□□□□ -0.28
VMP1-210ENST00000589823 ARL14Q8N4G2 192 aa13.3□□□□□ -0.28
VMP1-210ENST00000589823 OR6C4Q8NGE1 309 aa13.3□□□□□ -0.28
VMP1-210ENST00000589823 FAM122AQ96E09 287 aa13.3□□□□□ -0.28
VMP1-210ENST00000589823 CABS1Q96KC9 395 aa13.3□□□□□ -0.28
VMP1-210ENST00000589823 CNDP2Q96KP4 475 aaKnown RBP13.3□□□□□ -0.28
VMP1-210ENST00000589823 APOLD1Q96LR9 279 aa13.3□□□□□ -0.28
VMP1-210ENST00000589823 FERD3LQ96RJ6 166 aa13.3□□□□□ -0.28
VMP1-210ENST00000589823 VPS11Q9H270 941 aa13.3□□□□□ -0.28
VMP1-210ENST00000589823 CPNE7Q9UBL6 633 aa13.3□□□□□ -0.28
VMP1-210ENST00000589823 FTSJ1Q9UET6 329 aa13.3□□□□□ -0.28
VMP1-210ENST00000589823 PADI4Q9UM07 663 aa13.3□□□□□ -0.28
VMP1-210ENST00000589823 ACOT9Q9Y305 439 aa13.3□□□□□ -0.28
VMP1-210ENST00000589823 CFAP20Q9Y6A4 193 aaKnown RBP13.3□□□□□ -0.28
VMP1-210ENST00000589823 EP300Q09472 2414 aaPredicted RBP13.29□□□□□ -0.28
VMP1-210ENST00000589823 A0A096LPK6 155 aa13.29□□□□□ -0.28
VMP1-210ENST00000589823 RHPN2P1A8MT19 583 aa13.29□□□□□ -0.28
VMP1-210ENST00000589823 CATP04040 527 aaKnown RBP13.29□□□□□ -0.28
VMP1-210ENST00000589823 C2P06681 752 aa13.29□□□□□ -0.28
VMP1-210ENST00000589823 SLC35E2BP0CK96 405 aa13.29□□□□□ -0.28
VMP1-210ENST00000589823 CCDC166P0CW27 439 aa13.29□□□□□ -0.28
VMP1-210ENST00000589823 SLC26A3P40879 764 aa13.29□□□□□ -0.28
VMP1-210ENST00000589823 UBE2IP63279 158 aaKnown RBP13.29□□□□□ -0.28
VMP1-210ENST00000589823 ZNF844Q08AG5 666 aa13.29□□□□□ -0.28
VMP1-210ENST00000589823 CEP85LQ5SZL2 805 aa13.29□□□□□ -0.28
VMP1-210ENST00000589823 TMEM207Q6UWW9 146 aa13.29□□□□□ -0.28
VMP1-210ENST00000589823 CYHR1Q6ZMK1 362 aa13.29□□□□□ -0.28
VMP1-210ENST00000589823 PIWIL4Q7Z3Z4 852 aaKnown RBP13.29□□□□□ -0.28
VMP1-210ENST00000589823 C17orf82Q86X59 251 aaPredicted RBP13.29□□□□□ -0.28
VMP1-210ENST00000589823 SPNS2Q8IVW8 549 aa13.29□□□□□ -0.28
VMP1-210ENST00000589823 TBC1D21Q8IYX1 336 aa13.29□□□□□ -0.28
VMP1-210ENST00000589823 PHC3Q8NDX5 983 aa13.29□□□□□ -0.28
VMP1-210ENST00000589823 MAGEC3Q8TD91 643 aa13.29□□□□□ -0.28
VMP1-210ENST00000589823 ISL2Q96A47 359 aa13.29□□□□□ -0.28
VMP1-210ENST00000589823 SH3KBP1Q96B97 665 aa13.29□□□□□ -0.28
VMP1-210ENST00000589823 PDLIM5Q96HC4 596 aaKnown RBP13.29□□□□□ -0.28
VMP1-210ENST00000589823 TSNARE1Q96NA8 513 aa13.29□□□□□ -0.28
VMP1-210ENST00000589823 CDC6Q99741 560 aa13.29□□□□□ -0.28
VMP1-210ENST00000589823 TRIT1Q9H3H1 467 aaKnown RBP13.29□□□□□ -0.28
VMP1-210ENST00000589823 MVB12BQ9H7P6 319 aa13.29□□□□□ -0.28
VMP1-210ENST00000589823 ZNF624Q9P2J8 865 aaPredicted RBP13.29□□□□□ -0.28
VMP1-210ENST00000589823 CABIN1Q9Y6J0 2220 aa13.29□□□□□ -0.28
VMP1-210ENST00000589823 ZFC3H1O60293 1989 aaKnown RBP13.29□□□□□ -0.28
VMP1-210ENST00000589823 PABPN1LA6NDY0 278 aaKnown RBP13.28□□□□□ -0.28
VMP1-210ENST00000589823 RGS16O15492 202 aaPredicted RBP13.28□□□□□ -0.28
VMP1-210ENST00000589823 KDM1AO60341 852 aa13.28□□□□□ -0.28
VMP1-210ENST00000589823 MATN4O95460 622 aa13.28□□□□□ -0.28
VMP1-210ENST00000589823 TSPAN12O95859 305 aa13.28□□□□□ -0.28
VMP1-210ENST00000589823 C8GP07360 202 aa13.28□□□□□ -0.28
VMP1-210ENST00000589823 CKMT1AP12532 417 aa13.28□□□□□ -0.28
VMP1-210ENST00000589823 GLB1P16278 677 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms