RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 GGA2Q9UJY4 613 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 KCNJ14Q9UNX9 436 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 MYH7P12883 1935 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 TIAM2Q8IVF5 1701 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 KCPQ6ZWJ8 1503 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 PDS5AQ29RF7 1337 aaKnown RBP3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 SYNRGQ9UMZ2 1314 aa3.95□□□□□ -1.78
SMCHD1-208ENST00000583344 RTL9Q8NET4 1388 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 A0A1W2PS18 150 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 TTC26A0AVF1 554 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 ASPDHA6ND91 283 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 GOLGA8KD6RF30 607 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 ZBED4O75132 1171 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 RPN1P04843 607 aaKnown RBP3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 RHOXF2BP0C7M4 288 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 SLC2A4P14672 509 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 ITGA2P17301 1181 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 GPTP24298 496 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 CYLC1P35663 651 aaPredicted RBP3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 EIF2S3P41091 472 aaKnown RBP3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 PRCPP42785 496 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 RAD52P43351 418 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 GSCP56915 257 aaPredicted RBP3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 ZBED6P86452 979 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 AKAP17AQ02040 695 aaKnown RBP3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 CHRNDQ07001 517 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 ITGADQ13349 1161 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 CCNG2Q16589 344 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 TTC31Q49AM3 519 aaPredicted RBP3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 DGLUCYQ7Z3D6 616 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 NFE4Q86UQ8 179 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 TMEM219Q86XT9 240 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 CD302Q8IX05 232 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 ZNF34Q8IZ26 560 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 EIF1ADQ8N9N8 165 aaKnown RBP3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 NOA1Q8NC60 698 aaKnown RBP3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 SLC24A4Q8NFF2 622 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 SPPL3Q8TCT6 385 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 AFAP1L1Q8TED9 768 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 AENQ8WTP8 325 aaKnown RBP3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 DUSP19Q8WTR2 217 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 DHTKD1Q96HY7 919 aaPredicted RBP3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 MAELQ96JY0 434 aaKnown RBP3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 ERGIC2Q96RQ1 377 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 SLF1Q9BQI6 1058 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 RHOXF2Q9BQY4 288 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 MXRA8Q9BRK3 442 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 AP1M1Q9BXS5 423 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 CCSER1Q9C0I3 900 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 CUEDC2Q9H467 287 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 JMJD4Q9H9V9 463 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 DDX4Q9NQI0 724 aaKnown RBP3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 ZNHIT6Q9NWK9 470 aaKnown RBP3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 RNF14Q9UBS8 474 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 FEM1BQ9UK73 627 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 POU2F3Q9UKI9 436 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 SUFUQ9UMX1 484 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 ARHGAP26Q9UNA1 814 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 JRKLQ9Y4A0 524 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 PAPPAQ13219 1627 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 RIC1Q4ADV7 1423 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 PCDH11XQ9BZA7 1347 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 PCDH11YQ9BZA8 1340 aa3.94□□□□□ -1.78
SMCHD1-208ENST00000583344 ECM29Q5VYK3 1845 aa3.93□□□□□ -1.78
SMCHD1-208ENST00000583344 TNFSF12-TNFSF13A0A0A6YY99 330 aa3.93□□□□□ -1.78
SMCHD1-208ENST00000583344 SH2D7A6NKC9 451 aaPredicted RBP3.93□□□□□ -1.78
SMCHD1-208ENST00000583344 LAD1O00515 517 aa3.93□□□□□ -1.78
SMCHD1-208ENST00000583344 KLRC4O43908 158 aa3.93□□□□□ -1.78
SMCHD1-208ENST00000583344 IDH1O75874 414 aaKnown RBP3.93□□□□□ -1.78
SMCHD1-208ENST00000583344 MTA2O94776 668 aa3.93□□□□□ -1.78
SMCHD1-208ENST00000583344 STARD3NLO95772 234 aa3.93□□□□□ -1.78
SMCHD1-208ENST00000583344 G6PDP11413 515 aa3.93□□□□□ -1.78
SMCHD1-208ENST00000583344 PCNAP12004 261 aa3.93□□□□□ -1.78
SMCHD1-208ENST00000583344 CCNE1P24864 410 aa3.93□□□□□ -1.78
SMCHD1-208ENST00000583344 CALML3P27482 149 aa3.93□□□□□ -1.78
SMCHD1-208ENST00000583344 PRPHP41219 470 aa3.93□□□□□ -1.78
SMCHD1-208ENST00000583344 TUBP50607 506 aa3.93□□□□□ -1.78
SMCHD1-208ENST00000583344 NR0B1P51843 470 aaKnown RBP3.93□□□□□ -1.78
SMCHD1-208ENST00000583344 GTF2A1P52655 376 aaPredicted RBP3.93□□□□□ -1.78
SMCHD1-208ENST00000583344 STX17P56962 302 aa3.93□□□□□ -1.78
SMCHD1-208ENST00000583344 YWHAZP63104 245 aaKnown RBP3.93□□□□□ -1.78
SMCHD1-208ENST00000583344 UBXN1Q04323 297 aa3.93□□□□□ -1.78
SMCHD1-208ENST00000583344 TLE2Q04725 743 aa3.93□□□□□ -1.78
SMCHD1-208ENST00000583344 SREBF2Q12772 1141 aa3.93□□□□□ -1.78
SMCHD1-208ENST00000583344 NEDD9Q14511 834 aa3.93□□□□□ -1.78
SMCHD1-208ENST00000583344 IL17AQ16552 155 aa3.93□□□□□ -1.78
SMCHD1-208ENST00000583344 HSP90AA4PQ58FG1 418 aa3.93□□□□□ -1.78
SMCHD1-208ENST00000583344 STXBP5Q5T5C0 1151 aa3.93□□□□□ -1.78
SMCHD1-208ENST00000583344 ARMC3Q5W041 872 aa3.93□□□□□ -1.78
SMCHD1-208ENST00000583344 GALNT17Q6IS24 598 aa3.93□□□□□ -1.78
SMCHD1-208ENST00000583344 ANKRD54Q6NXT1 300 aa3.93□□□□□ -1.78
SMCHD1-208ENST00000583344 KIF6Q6ZMV9 814 aa3.93□□□□□ -1.78
SMCHD1-208ENST00000583344 TADA2BQ86TJ2 420 aa3.93□□□□□ -1.78
SMCHD1-208ENST00000583344 FAM160B2Q86V87 743 aa3.93□□□□□ -1.78
SMCHD1-208ENST00000583344 IQCKQ8N0W5 287 aa3.93□□□□□ -1.78
SMCHD1-208ENST00000583344 MREGQ8N565 214 aa3.93□□□□□ -1.78
SMCHD1-208ENST00000583344 RNF10Q8N5U6 811 aaKnown RBP3.93□□□□□ -1.78
SMCHD1-208ENST00000583344 GRAPLQ8TC17 118 aaPredicted RBP3.93□□□□□ -1.78
SMCHD1-208ENST00000583344 TAS1R2Q8TE23 839 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms