RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 ARRDC2Q8TBH0 407 aa17.44■□□□□ 0.38
CLK3-227ENST00000570296 N4BP2L2Q92802 583 aaPredicted RBP17.44■□□□□ 0.38
CLK3-227ENST00000570296 TTC25Q96NG3 672 aa17.44■□□□□ 0.38
CLK3-227ENST00000570296 INSM2Q96T92 566 aaPredicted RBP17.44■□□□□ 0.38
CLK3-227ENST00000570296 ADGRE3Q9BY15 652 aa17.44■□□□□ 0.38
CLK3-227ENST00000570296 HS3ST3B1Q9Y662 390 aa17.44■□□□□ 0.38
CLK3-227ENST00000570296 DNMT3AQ9Y6K1 912 aaPredicted RBP17.44■□□□□ 0.38
CLK3-227ENST00000570296 RASAL1O95294 804 aa17.43■□□□□ 0.38
CLK3-227ENST00000570296 NDUFS1P28331 727 aa17.43■□□□□ 0.38
CLK3-227ENST00000570296 ARL4AP40617 200 aa17.43■□□□□ 0.38
CLK3-227ENST00000570296 GTF3C1Q12789 2109 aa17.43■□□□□ 0.38
CLK3-227ENST00000570296 NFE2L1Q14494 772 aa17.43■□□□□ 0.38
CLK3-227ENST00000570296 METRNLQ641Q3 311 aa17.43■□□□□ 0.38
CLK3-227ENST00000570296 BIVMQ86UB2 503 aa17.43■□□□□ 0.38
CLK3-227ENST00000570296 BEND7Q8N7W2 519 aaPredicted RBP17.43■□□□□ 0.38
CLK3-227ENST00000570296 OR4E2Q8NGC2 313 aa17.43■□□□□ 0.38
CLK3-227ENST00000570296 MAML1Q92585 1016 aa17.43■□□□□ 0.38
CLK3-227ENST00000570296 FKBP10Q96AY3 582 aa17.43■□□□□ 0.38
CLK3-227ENST00000570296 MAGED4Q96JG8 741 aa17.43■□□□□ 0.38
CLK3-227ENST00000570296 C12orf66Q96MD2 445 aa17.43■□□□□ 0.38
CLK3-227ENST00000570296 ZCCHC2Q9C0B9 1178 aaKnown RBP17.43■□□□□ 0.38
CLK3-227ENST00000570296 WDR54Q9H977 334 aa17.43■□□□□ 0.38
CLK3-227ENST00000570296 TXLNGQ9NUQ3 528 aa17.43■□□□□ 0.38
CLK3-227ENST00000570296 DHCR7Q9UBM7 475 aaKnown RBP17.43■□□□□ 0.38
CLK3-227ENST00000570296 TMPRSS11EQ9UL52 423 aa17.43■□□□□ 0.38
CLK3-227ENST00000570296 ZNF835Q9Y2P0 537 aa17.43■□□□□ 0.38
CLK3-227ENST00000570296 FOXO6A8MYZ6 492 aa17.42■□□□□ 0.38
CLK3-227ENST00000570296 RNF8O76064 485 aa17.42■□□□□ 0.38
CLK3-227ENST00000570296 ATXN8OSP0DMR3 200 aa17.42■□□□□ 0.38
CLK3-227ENST00000570296 ATP1A3P13637 1013 aa17.42■□□□□ 0.38
CLK3-227ENST00000570296 IGFBP2P18065 325 aa17.42■□□□□ 0.38
CLK3-227ENST00000570296 MIPP30301 263 aa17.42■□□□□ 0.38
CLK3-227ENST00000570296 SOX5P35711 763 aa17.42■□□□□ 0.38
CLK3-227ENST00000570296 Q6ZPB1 254 aaPredicted RBP17.42■□□□□ 0.38
CLK3-227ENST00000570296 TMC3Q7Z5M5 1100 aa17.42■□□□□ 0.38
CLK3-227ENST00000570296 GDAP1Q8TB36 358 aa17.42■□□□□ 0.38
CLK3-227ENST00000570296 HAS2Q92819 552 aa17.42■□□□□ 0.38
CLK3-227ENST00000570296 TUBGCP2Q9BSJ2 902 aa17.42■□□□□ 0.38
CLK3-227ENST00000570296 WWP1Q9H0M0 922 aa17.42■□□□□ 0.38
CLK3-227ENST00000570296 TTLL3Q9Y4R7 772 aa17.42■□□□□ 0.38
CLK3-227ENST00000570296 COLEC10Q9Y6Z7 277 aa17.42■□□□□ 0.38
CLK3-227ENST00000570296 C17orf113A0A1B0GUU1 675 aa17.41■□□□□ 0.38
CLK3-227ENST00000570296 ZSCAN9O15535 394 aaPredicted RBP17.41■□□□□ 0.38
CLK3-227ENST00000570296 SOX11P35716 441 aa17.41■□□□□ 0.38
CLK3-227ENST00000570296 ZNF165P49910 485 aa17.41■□□□□ 0.38
CLK3-227ENST00000570296 NIPAL4Q0D2K0 466 aa17.41■□□□□ 0.38
CLK3-227ENST00000570296 DPYSL2Q16555 572 aa17.41■□□□□ 0.38
CLK3-227ENST00000570296 SKOR2Q2VWA4 1001 aaPredicted RBP17.41■□□□□ 0.38
CLK3-227ENST00000570296 POLNQ7Z5Q5 900 aa17.41■□□□□ 0.38
CLK3-227ENST00000570296 TMEM200AQ86VY9 491 aa17.41■□□□□ 0.38
CLK3-227ENST00000570296 CSPG4P5Q96PW8 444 aa17.41■□□□□ 0.38
CLK3-227ENST00000570296 SPRTNQ9H040 489 aaPredicted RBP17.41■□□□□ 0.38
CLK3-227ENST00000570296 SRMSQ9H3Y6 488 aa17.41■□□□□ 0.38
CLK3-227ENST00000570296 SLC22A11Q9NSA0 550 aa17.41■□□□□ 0.38
CLK3-227ENST00000570296 RBM22Q9NW64 420 aaKnown RBP eCLIP17.41■□□□□ 0.389e-10■□□□□ 8.1
CLK3-227ENST00000570296 ACSL5Q9ULC5 683 aa17.41■□□□□ 0.38
CLK3-227ENST00000570296 CPAMD8Q8IZJ3 1885 aa17.41■□□□□ 0.38
CLK3-227ENST00000570296 HCFC1P51610 2035 aa17.4■□□□□ 0.38
CLK3-227ENST00000570296 USP1O94782 785 aa17.4■□□□□ 0.38
CLK3-227ENST00000570296 ALBP02768 609 aa17.4■□□□□ 0.38
CLK3-227ENST00000570296 PVRP15151 417 aa17.4■□□□□ 0.38
CLK3-227ENST00000570296 CTSCP53634 463 aa17.4■□□□□ 0.38
CLK3-227ENST00000570296 JAM2P57087 298 aa17.4■□□□□ 0.38
CLK3-227ENST00000570296 SRSF11Q05519 484 aaKnown RBP17.4■□□□□ 0.38
CLK3-227ENST00000570296 PCOLCEQ15113 449 aa17.4■□□□□ 0.38
CLK3-227ENST00000570296 SYCP1Q15431 976 aa17.4■□□□□ 0.38
CLK3-227ENST00000570296 CAMK4Q16566 473 aa17.4■□□□□ 0.38
CLK3-227ENST00000570296 ATP13A5Q4VNC0 1218 aa17.4■□□□□ 0.38
CLK3-227ENST00000570296 TLDC1Q6P9B6 456 aa17.4■□□□□ 0.38
CLK3-227ENST00000570296 ACVR1CQ8NER5 493 aa17.4■□□□□ 0.38
CLK3-227ENST00000570296 OR11G2Q8NGC1 345 aa17.4■□□□□ 0.38
CLK3-227ENST00000570296 CA5BP1Q8WTZ4 195 aa17.4■□□□□ 0.38
CLK3-227ENST00000570296 PHF10Q8WUB8 498 aaKnown RBP17.4■□□□□ 0.38
CLK3-227ENST00000570296 LCN9Q8WX39 176 aa17.4■□□□□ 0.38
CLK3-227ENST00000570296 FATE1Q969F0 183 aa17.4■□□□□ 0.38
CLK3-227ENST00000570296 CHRNA10Q9GZZ6 450 aa17.4■□□□□ 0.38
CLK3-227ENST00000570296 KLHL25Q9H0H3 589 aa17.4■□□□□ 0.38
CLK3-227ENST00000570296 GANQ9H2C0 597 aa17.4■□□□□ 0.38
CLK3-227ENST00000570296 MAGEE1Q9HCI5 957 aa17.4■□□□□ 0.38
CLK3-227ENST00000570296 CCM2LQ9NUG4 571 aaPredicted RBP17.4■□□□□ 0.38
CLK3-227ENST00000570296 PLA2G3Q9NZ20 509 aa17.4■□□□□ 0.38
CLK3-227ENST00000570296 SHOC2Q9UQ13 582 aa17.4■□□□□ 0.38
CLK3-227ENST00000570296 MATN3O15232 486 aa17.39■□□□□ 0.37
CLK3-227ENST00000570296 SLC4A1P02730 911 aa17.39■□□□□ 0.37
CLK3-227ENST00000570296 SLC35G4P0C7Q5 338 aa17.39■□□□□ 0.37
CLK3-227ENST00000570296 UGT1A4P22310 534 aa17.39■□□□□ 0.37
CLK3-227ENST00000570296 MAMLD1Q13495 774 aa17.39■□□□□ 0.37
CLK3-227ENST00000570296 RBBP7Q16576 425 aa17.39■□□□□ 0.37
CLK3-227ENST00000570296 TIGD7Q6NT04 549 aaPredicted RBP17.39■□□□□ 0.37
CLK3-227ENST00000570296 CXXC5Q7LFL8 322 aaKnown RBP17.39■□□□□ 0.37
CLK3-227ENST00000570296 MCOLN2Q8IZK6 566 aa17.39■□□□□ 0.37
CLK3-227ENST00000570296 ZNF655Q8N720 491 aaPredicted RBP17.39■□□□□ 0.37
CLK3-227ENST00000570296 RASGEF1AQ8N9B8 481 aa17.39■□□□□ 0.37
CLK3-227ENST00000570296 THAP3Q8WTV1 239 aaPredicted RBP17.39■□□□□ 0.37
CLK3-227ENST00000570296 NRGNQ92686 78 aa17.39■□□□□ 0.37
CLK3-227ENST00000570296 ZNF653Q96CK0 615 aa17.39■□□□□ 0.37
CLK3-227ENST00000570296 SPSB2Q99619 263 aa17.39■□□□□ 0.37
CLK3-227ENST00000570296 GPR63Q9BZJ6 419 aa17.39■□□□□ 0.37
CLK3-227ENST00000570296 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP17.39■□□□□ 0.37
CLK3-227ENST00000570296 SLC26A1Q9H2B4 701 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms