RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 FUCA2Q9BTY2 467 aa2.53□□□□□ -2
VPS35-207ENST00000568191 HGH1Q9BTY7 390 aa2.53□□□□□ -2
VPS35-207ENST00000568191 PLK3Q9H4B4 646 aa2.53□□□□□ -2
VPS35-207ENST00000568191 CHMP1AQ9HD42 196 aaPredicted RBP2.53□□□□□ -2
VPS35-207ENST00000568191 RPS10P5Q9NQ39 176 aa2.53□□□□□ -2
VPS35-207ENST00000568191 INTS9Q9NV88 658 aaKnown RBP2.53□□□□□ -2
VPS35-207ENST00000568191 PGAP2Q9UHJ9 254 aa2.53□□□□□ -2
VPS35-207ENST00000568191 GATA1P15976 413 aaPredicted RBP2.52□□□□□ -2.01
VPS35-207ENST00000568191 ACADSP16219 412 aa2.52□□□□□ -2.01
VPS35-207ENST00000568191 SLC6A6P31641 620 aa2.52□□□□□ -2.01
VPS35-207ENST00000568191 PTGER3P43115 390 aa2.52□□□□□ -2.01
VPS35-207ENST00000568191 PDX1P52945 283 aa2.52□□□□□ -2.01
VPS35-207ENST00000568191 PPP2R2BQ00005 443 aa2.52□□□□□ -2.01
VPS35-207ENST00000568191 MPP1Q00013 466 aa2.52□□□□□ -2.01
VPS35-207ENST00000568191 PRKAA1Q13131 559 aa2.52□□□□□ -2.01
VPS35-207ENST00000568191 RIGQ13278 110 aa2.52□□□□□ -2.01
VPS35-207ENST00000568191 MAMLD1Q13495 774 aa2.52□□□□□ -2.01
VPS35-207ENST00000568191 DLG2Q15700 870 aa2.52□□□□□ -2.01
VPS35-207ENST00000568191 XKR6Q5GH73 641 aa2.52□□□□□ -2.01
VPS35-207ENST00000568191 MDH1BQ5I0G3 518 aa2.52□□□□□ -2.01
VPS35-207ENST00000568191 DCAF10Q5QP82 559 aa2.52□□□□□ -2.01
VPS35-207ENST00000568191 JAKMIP3Q5VZ66 844 aa2.52□□□□□ -2.01
VPS35-207ENST00000568191 JADE1Q6IE81 842 aa2.52□□□□□ -2.01
VPS35-207ENST00000568191 ERC1Q8IUD2 1116 aa2.52□□□□□ -2.01
VPS35-207ENST00000568191 CPSF7Q8N684 471 aaKnown RBP2.52□□□□□ -2.01
VPS35-207ENST00000568191 AMER3Q8N944 861 aa2.52□□□□□ -2.01
VPS35-207ENST00000568191 HJURPQ8NCD3 748 aaPredicted RBP2.52□□□□□ -2.01
VPS35-207ENST00000568191 OR2L2Q8NH16 312 aa2.52□□□□□ -2.01
VPS35-207ENST00000568191 TBC1D16Q8TBP0 767 aa2.52□□□□□ -2.01
VPS35-207ENST00000568191 HPSE2Q8WWQ2 592 aa2.52□□□□□ -2.01
VPS35-207ENST00000568191 DYRK2Q92630 601 aa2.52□□□□□ -2.01
VPS35-207ENST00000568191 ARSGQ96EG1 525 aa2.52□□□□□ -2.01
VPS35-207ENST00000568191 ZNF300Q96RE9 604 aaPredicted RBP2.52□□□□□ -2.01
VPS35-207ENST00000568191 USP28Q96RU2 1077 aa2.52□□□□□ -2.01
VPS35-207ENST00000568191 GPATCH1Q9BRR8 931 aaKnown RBP2.52□□□□□ -2.01
VPS35-207ENST00000568191 UPF3AQ9H1J1 476 aaKnown RBP2.52□□□□□ -2.01
VPS35-207ENST00000568191 PANK3Q9H999 370 aa2.52□□□□□ -2.01
VPS35-207ENST00000568191 PELI2Q9HAT8 420 aa2.52□□□□□ -2.01
VPS35-207ENST00000568191 PPANQ9NQ55 473 aaKnown RBP2.52□□□□□ -2.01
VPS35-207ENST00000568191 CCDC177Q9NQR7 707 aaPredicted RBP2.52□□□□□ -2.01
VPS35-207ENST00000568191 SETD4Q9NVD3 440 aa2.52□□□□□ -2.01
VPS35-207ENST00000568191 EXO1Q9UQ84 846 aaKnown RBP2.52□□□□□ -2.01
VPS35-207ENST00000568191 WDR37Q9Y2I8 494 aa2.52□□□□□ -2.01
VPS35-207ENST00000568191 PCDHGA5Q9Y5G8 931 aa2.52□□□□□ -2.01
VPS35-207ENST00000568191 LYVE1Q9Y5Y7 322 aa2.52□□□□□ -2.01
VPS35-207ENST00000568191 TDRD9Q8NDG6 1382 aaKnown RBP2.51□□□□□ -2.01
VPS35-207ENST00000568191 LRRC72A6NJI9 287 aa2.51□□□□□ -2.01
VPS35-207ENST00000568191 J3KRW8 73 aa2.51□□□□□ -2.01
VPS35-207ENST00000568191 SSX4O60224 188 aa2.51□□□□□ -2.01
VPS35-207ENST00000568191 ZFAND5O76080 213 aa2.51□□□□□ -2.01
VPS35-207ENST00000568191 AZU1P20160 251 aa2.51□□□□□ -2.01
VPS35-207ENST00000568191 UGT1A4P22310 534 aa2.51□□□□□ -2.01
VPS35-207ENST00000568191 NMBRP28336 390 aa2.51□□□□□ -2.01
VPS35-207ENST00000568191 SHC1P29353 583 aa2.51□□□□□ -2.01
VPS35-207ENST00000568191 TLX1P31314 330 aaPredicted RBP2.51□□□□□ -2.01
VPS35-207ENST00000568191 ELAVL2Q12926 359 aaKnown RBP2.51□□□□□ -2.01
VPS35-207ENST00000568191 KCNC3Q14003 757 aa2.51□□□□□ -2.01
VPS35-207ENST00000568191 P2RY6Q15077 328 aa2.51□□□□□ -2.01
VPS35-207ENST00000568191 ALFQ53S48 1182 aa2.51□□□□□ -2.01
VPS35-207ENST00000568191 TAF1BQ53T94 588 aaPredicted RBP2.51□□□□□ -2.01
VPS35-207ENST00000568191 TMEM198Q66K66 360 aa2.51□□□□□ -2.01
VPS35-207ENST00000568191 FIP1L1Q6UN15 594 aaKnown RBP2.51□□□□□ -2.01
VPS35-207ENST00000568191 LINGO4Q6UY18 593 aa2.51□□□□□ -2.01
VPS35-207ENST00000568191 SCFD2Q8WU76 684 aa2.51□□□□□ -2.01
VPS35-207ENST00000568191 ERLEC1Q96DZ1 483 aa2.51□□□□□ -2.01
VPS35-207ENST00000568191 PPM1MQ96MI6 270 aa2.51□□□□□ -2.01
VPS35-207ENST00000568191 ZNF582Q96NG8 517 aaPredicted RBP2.51□□□□□ -2.01
VPS35-207ENST00000568191 SLC22A12Q96S37 553 aa2.51□□□□□ -2.01
VPS35-207ENST00000568191 ABHD6Q9BV23 337 aa2.51□□□□□ -2.01
VPS35-207ENST00000568191 DGCR6LQ9BY27 220 aa2.51□□□□□ -2.01
VPS35-207ENST00000568191 FAM49AQ9H0Q0 323 aaPredicted RBP2.51□□□□□ -2.01
VPS35-207ENST00000568191 MUC13Q9H3R2 512 aa2.51□□□□□ -2.01
VPS35-207ENST00000568191 SLA2Q9H6Q3 261 aa2.51□□□□□ -2.01
VPS35-207ENST00000568191 ERAP1Q9NZ08 941 aa2.51□□□□□ -2.01
VPS35-207ENST00000568191 NPAP1Q9NZP6 1156 aa2.51□□□□□ -2.01
VPS35-207ENST00000568191 STK26Q9P289 416 aa2.51□□□□□ -2.01
VPS35-207ENST00000568191 LRWD1Q9UFC0 647 aa2.51□□□□□ -2.01
VPS35-207ENST00000568191 ZDHHC2Q9UIJ5 367 aa2.51□□□□□ -2.01
VPS35-207ENST00000568191 OSGIN1Q9UJX0 560 aa2.51□□□□□ -2.01
VPS35-207ENST00000568191 GRID1Q9ULK0 1009 aa2.51□□□□□ -2.01
VPS35-207ENST00000568191 CORO1CQ9ULV4 474 aaPredicted RBP2.51□□□□□ -2.01
VPS35-207ENST00000568191 LAS1LQ9Y4W2 734 aaKnown RBP2.51□□□□□ -2.01
VPS35-207ENST00000568191 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP2.51□□□□□ -2.01
VPS35-207ENST00000568191 ZNF644Q9H582 1327 aaPredicted RBP2.5□□□□□ -2.01
VPS35-207ENST00000568191 LOC101059948A0A1B0GTJ6 334 aa2.5□□□□□ -2.01
VPS35-207ENST00000568191 E9PI62 339 aa2.5□□□□□ -2.01
VPS35-207ENST00000568191 TSPAN1O60635 241 aa2.5□□□□□ -2.01
VPS35-207ENST00000568191 MOCS3O95396 460 aa2.5□□□□□ -2.01
VPS35-207ENST00000568191 ACP2P11117 423 aa2.5□□□□□ -2.01
VPS35-207ENST00000568191 VPREB1P12018 145 aa2.5□□□□□ -2.01
VPS35-207ENST00000568191 RARGP13631 454 aa2.5□□□□□ -2.01
VPS35-207ENST00000568191 TNFAIP3P21580 790 aa2.5□□□□□ -2.01
VPS35-207ENST00000568191 PAX3P23760 479 aa2.5□□□□□ -2.01
VPS35-207ENST00000568191 PON1P27169 355 aa2.5□□□□□ -2.01
VPS35-207ENST00000568191 HNF4AP41235 474 aa2.5□□□□□ -2.01
VPS35-207ENST00000568191 CX3CL1P78423 397 aa2.5□□□□□ -2.01
VPS35-207ENST00000568191 PEX6Q13608 980 aa2.5□□□□□ -2.01
VPS35-207ENST00000568191 KRT32Q14532 448 aa2.5□□□□□ -2.01
VPS35-207ENST00000568191 MELKQ14680 651 aa2.5□□□□□ -2.01
VPS35-207ENST00000568191 E2F5Q15329 346 aa2.5□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms