RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 SOHLH2Q9NX45 425 aa16.64■□□□□ 0.25
CLN3-216ENST00000565316 CCL22O00626 93 aa16.63■□□□□ 0.25
CLN3-216ENST00000565316 ACRV1P26436 265 aa16.63■□□□□ 0.25
CLN3-216ENST00000565316 PRDX3P30048 256 aaKnown RBP16.63■□□□□ 0.25
CLN3-216ENST00000565316 MC4RP32245 332 aa16.63■□□□□ 0.25
CLN3-216ENST00000565316 RORAP35398 523 aa16.63■□□□□ 0.25
CLN3-216ENST00000565316 CDKN1CP49918 316 aaPredicted RBP16.63■□□□□ 0.25
CLN3-216ENST00000565316 PRKAA1Q13131 559 aa16.63■□□□□ 0.25
CLN3-216ENST00000565316 RPA4Q13156 261 aa16.63■□□□□ 0.25
CLN3-216ENST00000565316 ZNF789Q5FWF6 425 aa16.63■□□□□ 0.25
CLN3-216ENST00000565316 PAPD7Q5XG87 772 aaKnown RBP16.63■□□□□ 0.25
CLN3-216ENST00000565316 LCN10Q6JVE6 187 aa16.63■□□□□ 0.25
CLN3-216ENST00000565316 AADACL2Q6P093 401 aa16.63■□□□□ 0.25
CLN3-216ENST00000565316 DSELQ8IZU8 1212 aa16.63■□□□□ 0.25
CLN3-216ENST00000565316 ADAMTS17Q8TE56 1095 aa16.63■□□□□ 0.25
CLN3-216ENST00000565316 CPT1BQ92523 772 aa16.63■□□□□ 0.25
CLN3-216ENST00000565316 DNAJC1Q96KC8 554 aaKnown RBP16.63■□□□□ 0.25
CLN3-216ENST00000565316 TLR10Q9BXR5 811 aa16.63■□□□□ 0.25
CLN3-216ENST00000565316 MVB12BQ9H7P6 319 aa16.63■□□□□ 0.25
CLN3-216ENST00000565316 FANCEQ9HB96 536 aa16.63■□□□□ 0.25
CLN3-216ENST00000565316 REXO2Q9Y3B8 237 aaKnown RBP16.63■□□□□ 0.25
CLN3-216ENST00000565316 PCDHGA9Q9Y5G4 932 aaKnown RBP16.63■□□□□ 0.25
CLN3-216ENST00000565316 SOWAHDA6NJG2 315 aa16.62■□□□□ 0.25
CLN3-216ENST00000565316 MEN1O00255 615 aa16.62■□□□□ 0.25
CLN3-216ENST00000565316 BTN3A3O00478 584 aa16.62■□□□□ 0.25
CLN3-216ENST00000565316 KLK3P07288 261 aaPredicted RBP16.62■□□□□ 0.25
CLN3-216ENST00000565316 CAPN1P07384 714 aa16.62■□□□□ 0.25
CLN3-216ENST00000565316 GSTM1P09488 218 aa16.62■□□□□ 0.25
CLN3-216ENST00000565316 CDH3P22223 829 aa16.62■□□□□ 0.25
CLN3-216ENST00000565316 PSMA3P25788 255 aa16.62■□□□□ 0.25
CLN3-216ENST00000565316 CETN2P41208 172 aa16.62■□□□□ 0.25
CLN3-216ENST00000565316 MLLT10P55197 1068 aa16.62■□□□□ 0.25
CLN3-216ENST00000565316 GSTM4Q03013 218 aa16.62■□□□□ 0.25
CLN3-216ENST00000565316 ABRQ12979 859 aa16.62■□□□□ 0.25
CLN3-216ENST00000565316 PARP6Q2NL67 630 aa16.62■□□□□ 0.25
CLN3-216ENST00000565316 PRAMEF17Q5VTA0 474 aa16.62■□□□□ 0.25
CLN3-216ENST00000565316 CPZQ66K79 652 aa16.62■□□□□ 0.25
CLN3-216ENST00000565316 SERPINA9Q86WD7 417 aa16.62■□□□□ 0.25
CLN3-216ENST00000565316 TMTC1Q8IUR5 882 aa16.62■□□□□ 0.25
CLN3-216ENST00000565316 OR1L3Q8NH93 324 aa16.62■□□□□ 0.25
CLN3-216ENST00000565316 LRRC45Q96CN5 670 aa16.62■□□□□ 0.25
CLN3-216ENST00000565316 FERD3LQ96RJ6 166 aa16.62■□□□□ 0.25
CLN3-216ENST00000565316 LACRTQ9GZZ8 138 aa16.62■□□□□ 0.25
CLN3-216ENST00000565316 VPS37BQ9H9H4 285 aa16.62■□□□□ 0.25
CLN3-216ENST00000565316 NLE1Q9NVX2 485 aaPredicted RBP16.62■□□□□ 0.25
CLN3-216ENST00000565316 IFRD1O00458 451 aaPredicted RBP16.61■□□□□ 0.25
CLN3-216ENST00000565316 BTN3A1O00481 513 aa16.61■□□□□ 0.25
CLN3-216ENST00000565316 CEACAM4O75871 244 aa16.61■□□□□ 0.25
CLN3-216ENST00000565316 ST6GAL1P15907 406 aa16.61■□□□□ 0.25
CLN3-216ENST00000565316 PDHA2P29803 388 aa16.61■□□□□ 0.25
CLN3-216ENST00000565316 PREPP48147 710 aa16.61■□□□□ 0.25
CLN3-216ENST00000565316 BOP1Q14137 746 aaKnown RBP16.61■□□□□ 0.25
CLN3-216ENST00000565316 PIANPQ8IYJ0 282 aa16.61■□□□□ 0.25
CLN3-216ENST00000565316 ADGRF3Q8IZF5 1079 aa16.61■□□□□ 0.25
CLN3-216ENST00000565316 FAM26EQ8N5C1 309 aa16.61■□□□□ 0.25
CLN3-216ENST00000565316 OR52E1Q8NGJ3 308 aa16.61■□□□□ 0.25
CLN3-216ENST00000565316 NRTNQ99748 197 aa16.61■□□□□ 0.25
CLN3-216ENST00000565316 NLNQ9BYT8 704 aa16.61■□□□□ 0.25
CLN3-216ENST00000565316 ING2Q9H160 280 aa16.61■□□□□ 0.25
CLN3-216ENST00000565316 PCMTD2Q9NV79 361 aa16.61■□□□□ 0.25
CLN3-216ENST00000565316 GSAPA4D1B5 854 aa16.6■□□□□ 0.25
CLN3-216ENST00000565316 GRID2IPA4D2P6 1211 aa16.6■□□□□ 0.25
CLN3-216ENST00000565316 TMEM150CB9EJG8 249 aa16.6■□□□□ 0.25
CLN3-216ENST00000565316 AP2A2O94973 939 aa16.6■□□□□ 0.25
CLN3-216ENST00000565316 METTL18O95568 372 aa16.6■□□□□ 0.25
CLN3-216ENST00000565316 PRSS56P0CW18 603 aa16.6■□□□□ 0.25
CLN3-216ENST00000565316 SPTBP11277 2137 aa16.6■□□□□ 0.25
CLN3-216ENST00000565316 PGDP52209 483 aa16.6■□□□□ 0.25
CLN3-216ENST00000565316 NAP1L1P55209 391 aaKnown RBP16.6■□□□□ 0.25
CLN3-216ENST00000565316 ZRANB3Q5FWF4 1079 aa16.6■□□□□ 0.25
CLN3-216ENST00000565316 FAM198BQ6UWH4 519 aa16.6■□□□□ 0.25
CLN3-216ENST00000565316 ARHGEF18Q6ZSZ5 1173 aa16.6■□□□□ 0.25
CLN3-216ENST00000565316 MICALCLQ6ZW33 695 aa16.6■□□□□ 0.25
CLN3-216ENST00000565316 ATCAYQ86WG3 371 aa16.6■□□□□ 0.25
CLN3-216ENST00000565316 AMIGO1Q86WK6 493 aa16.6■□□□□ 0.25
CLN3-216ENST00000565316 CLDN19Q8N6F1 224 aa16.6■□□□□ 0.25
CLN3-216ENST00000565316 ENDOVQ8N8Q3 282 aaKnown RBP16.6■□□□□ 0.25
CLN3-216ENST00000565316 PHC3Q8NDX5 983 aa16.6■□□□□ 0.25
CLN3-216ENST00000565316 TFGQ92734 400 aaPredicted RBP16.6■□□□□ 0.25
CLN3-216ENST00000565316 CDKN2AIPNLQ96HQ2 116 aa16.6■□□□□ 0.25
CLN3-216ENST00000565316 TRAPPC9Q96Q05 1148 aa16.6■□□□□ 0.25
CLN3-216ENST00000565316 SLC25A23Q9BV35 468 aa16.6■□□□□ 0.25
CLN3-216ENST00000565316 LRRC40Q9H9A6 602 aa16.6■□□□□ 0.25
CLN3-216ENST00000565316 ACTR5Q9H9F9 607 aaPredicted RBP16.6■□□□□ 0.25
CLN3-216ENST00000565316 TCFL5Q9UL49 500 aa16.6■□□□□ 0.25
CLN3-216ENST00000565316 SEC16AO15027 2179 aa16.6■□□□□ 0.25
CLN3-216ENST00000565316 MED13Q9UHV7 2174 aa16.59■□□□□ 0.25
CLN3-216ENST00000565316 MROH6A6NGR9 719 aa16.59■□□□□ 0.25
CLN3-216ENST00000565316 ARGFXA6NJG6 315 aa16.59■□□□□ 0.25
CLN3-216ENST00000565316 DDX3YO15523 660 aaKnown RBP16.59■□□□□ 0.25
CLN3-216ENST00000565316 IPO7O95373 1038 aaKnown RBP16.59■□□□□ 0.25
CLN3-216ENST00000565316 TPH1P17752 444 aa16.59■□□□□ 0.25
CLN3-216ENST00000565316 PTGIRP43119 386 aa16.59■□□□□ 0.25
CLN3-216ENST00000565316 CCL11P51671 97 aa16.59■□□□□ 0.25
CLN3-216ENST00000565316 ZNF75DP51815 510 aa16.59■□□□□ 0.25
CLN3-216ENST00000565316 CACNG1Q06432 222 aa16.59■□□□□ 0.25
CLN3-216ENST00000565316 KLF1Q13351 362 aaPredicted RBP16.59■□□□□ 0.25
CLN3-216ENST00000565316 DBN1Q16643 649 aa16.59■□□□□ 0.25
CLN3-216ENST00000565316 ZNF449Q6P9G9 518 aa16.59■□□□□ 0.25
CLN3-216ENST00000565316 RAD9BQ6WBX8 426 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms