RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 ZNF295-AS1Q8N0V1 137 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 ANKRD20A12PQ8NF67 263 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 OR1N1Q8NGS0 311 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 FATE1Q969F0 183 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 HDAC11Q96DB2 347 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 CCDC120Q96HB5 630 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 AP1M1Q9BXS5 423 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 UGT1A7Q9HAW7 530 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 UGT1A10Q9HAW8 530 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 UGT1A8Q9HAW9 530 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 CBX8Q9HC52 389 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 SLC6A20Q9NP91 592 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 TXLNGQ9NUQ3 528 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 IRAK4Q9NWZ3 460 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 FBXL4Q9UKA2 621 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 ACSL5Q9ULC5 683 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 AP1M2Q9Y6Q5 423 aa7.09□□□□□ -1.27
VPS4A-203ENST00000564399 PRRC2AP48634 2157 aaKnown RBP7.09□□□□□ -1.27
VPS4A-203ENST00000564399 NCOA6Q14686 2063 aaPredicted RBP7.08□□□□□ -1.28
VPS4A-203ENST00000564399 MGAT4DA6NG13 374 aa7.08□□□□□ -1.28
VPS4A-203ENST00000564399 BTN3A1O00481 513 aa7.08□□□□□ -1.28
VPS4A-203ENST00000564399 AURKAO14965 403 aa7.08□□□□□ -1.28
VPS4A-203ENST00000564399 KCNN4O15554 427 aa7.08□□□□□ -1.28
VPS4A-203ENST00000564399 CNOT3O75175 753 aaKnown RBP7.08□□□□□ -1.28
VPS4A-203ENST00000564399 MT-CYBP00156 380 aaPredicted RBP7.08□□□□□ -1.28
VPS4A-203ENST00000564399 UMODP07911 640 aa7.08□□□□□ -1.28
VPS4A-203ENST00000564399 MSL3P1P0C860 447 aa7.08□□□□□ -1.28
VPS4A-203ENST00000564399 GZMAP12544 262 aa7.08□□□□□ -1.28
VPS4A-203ENST00000564399 MSH3P20585 1137 aa7.08□□□□□ -1.28
VPS4A-203ENST00000564399 KRTAP10-9P60411 292 aa7.08□□□□□ -1.28
VPS4A-203ENST00000564399 UBE2HP62256 183 aa7.08□□□□□ -1.28
VPS4A-203ENST00000564399 GBE1Q04446 702 aa7.08□□□□□ -1.28
VPS4A-203ENST00000564399 HADHQ16836 314 aaKnown RBP7.08□□□□□ -1.28
VPS4A-203ENST00000564399 DEFB110Q30KQ9 67 aa7.08□□□□□ -1.28
VPS4A-203ENST00000564399 NKAIN1Q4KMZ8 207 aa7.08□□□□□ -1.28
VPS4A-203ENST00000564399 FAM182AQ5T1J6 154 aa7.08□□□□□ -1.28
VPS4A-203ENST00000564399 CDKAL1Q5VV42 579 aa7.08□□□□□ -1.28
VPS4A-203ENST00000564399 RHBDD2Q6NTF9 364 aa7.08□□□□□ -1.28
VPS4A-203ENST00000564399 XKRXQ6PP77 449 aa7.08□□□□□ -1.28
VPS4A-203ENST00000564399 IGFL2Q6UWQ7 119 aa7.08□□□□□ -1.28
VPS4A-203ENST00000564399 ISLR2Q6UXK2 745 aa7.08□□□□□ -1.28
VPS4A-203ENST00000564399 FAM151BQ6UXP7 276 aa7.08□□□□□ -1.28
VPS4A-203ENST00000564399 LINC00696Q6ZRV3 163 aa7.08□□□□□ -1.28
VPS4A-203ENST00000564399 CDHR3Q6ZTQ4 885 aa7.08□□□□□ -1.28
VPS4A-203ENST00000564399 DET1Q7L5Y6 550 aa7.08□□□□□ -1.28
VPS4A-203ENST00000564399 TMEM151BQ8IW70 566 aa7.08□□□□□ -1.28
VPS4A-203ENST00000564399 CNTD1Q8N815 330 aa7.08□□□□□ -1.28
VPS4A-203ENST00000564399 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.08□□□□□ -1.28
VPS4A-203ENST00000564399 KCTD6Q8NC69 237 aa7.08□□□□□ -1.28
VPS4A-203ENST00000564399 CATSPER1Q8NEC5 780 aa7.08□□□□□ -1.28
VPS4A-203ENST00000564399 ACVR1CQ8NER5 493 aa7.08□□□□□ -1.28
VPS4A-203ENST00000564399 ENOX1Q8TC92 643 aaKnown RBP7.08□□□□□ -1.28
VPS4A-203ENST00000564399 PROKR1Q8TCW9 393 aa7.08□□□□□ -1.28
VPS4A-203ENST00000564399 CHTF18Q8WVB6 975 aa7.08□□□□□ -1.28
VPS4A-203ENST00000564399 TRIM11Q96F44 468 aa7.08□□□□□ -1.28
VPS4A-203ENST00000564399 THOC3Q96J01 351 aaKnown RBP7.08□□□□□ -1.28
VPS4A-203ENST00000564399 ZNF830Q96NB3 372 aaPredicted RBP7.08□□□□□ -1.28
VPS4A-203ENST00000564399 FERD3LQ96RJ6 166 aa7.08□□□□□ -1.28
VPS4A-203ENST00000564399 TRIB3Q96RU7 358 aa7.08□□□□□ -1.28
VPS4A-203ENST00000564399 SRPK1Q96SB4 655 aaKnown RBP7.08□□□□□ -1.28
VPS4A-203ENST00000564399 SYT11Q9BT88 431 aa7.08□□□□□ -1.28
VPS4A-203ENST00000564399 CEP41Q9BYV8 373 aa7.08□□□□□ -1.28
VPS4A-203ENST00000564399 LHPPQ9H008 270 aa7.08□□□□□ -1.28
VPS4A-203ENST00000564399 SPRTNQ9H040 489 aaPredicted RBP7.08□□□□□ -1.28
VPS4A-203ENST00000564399 IL26Q9NPH9 171 aa7.08□□□□□ -1.28
VPS4A-203ENST00000564399 DHCR7Q9UBM7 475 aaKnown RBP7.08□□□□□ -1.28
VPS4A-203ENST00000564399 CDC23Q9UJX2 597 aa7.08□□□□□ -1.28
VPS4A-203ENST00000564399 SPO11Q9Y5K1 396 aa7.08□□□□□ -1.28
VPS4A-203ENST00000564399 HEBP2Q9Y5Z4 205 aa7.08□□□□□ -1.28
VPS4A-203ENST00000564399 CSMD2Q7Z408 3487 aa7.08□□□□□ -1.28
VPS4A-203ENST00000564399 GLYATL1P3A0A0U1RQE8 302 aa7.07□□□□□ -1.28
VPS4A-203ENST00000564399 LGALS16A8MUM7 142 aa7.07□□□□□ -1.28
VPS4A-203ENST00000564399 C2orf74A8MZ97 194 aa7.07□□□□□ -1.28
VPS4A-203ENST00000564399 BTN3A3O00478 584 aa7.07□□□□□ -1.28
VPS4A-203ENST00000564399 PCDH17O14917 1159 aa7.07□□□□□ -1.28
VPS4A-203ENST00000564399 ZSCAN9O15535 394 aaPredicted RBP7.07□□□□□ -1.28
VPS4A-203ENST00000564399 GPR39O43194 453 aa7.07□□□□□ -1.28
VPS4A-203ENST00000564399 PMPCBO75439 489 aa7.07□□□□□ -1.28
VPS4A-203ENST00000564399 UNC5CO95185 931 aa7.07□□□□□ -1.28
VPS4A-203ENST00000564399 NDST3O95803 873 aa7.07□□□□□ -1.28
VPS4A-203ENST00000564399 MYBL1P10243 752 aa7.07□□□□□ -1.28
VPS4A-203ENST00000564399 ESRRAP11474 423 aaPredicted RBP7.07□□□□□ -1.28
VPS4A-203ENST00000564399 CD1EP15812 388 aa7.07□□□□□ -1.28
VPS4A-203ENST00000564399 CDK11BP21127 795 aaKnown RBP7.07□□□□□ -1.28
VPS4A-203ENST00000564399 ALAS2P22557 587 aa7.07□□□□□ -1.28
VPS4A-203ENST00000564399 MMP11P24347 488 aa7.07□□□□□ -1.28
VPS4A-203ENST00000564399 HMGCLP35914 325 aa7.07□□□□□ -1.28
VPS4A-203ENST00000564399 SPAM1P38567 509 aa7.07□□□□□ -1.28
VPS4A-203ENST00000564399 PBX1P40424 430 aa7.07□□□□□ -1.28
VPS4A-203ENST00000564399 CASP6P55212 293 aa7.07□□□□□ -1.28
VPS4A-203ENST00000564399 ARG2P78540 354 aa7.07□□□□□ -1.28
VPS4A-203ENST00000564399 SLC25A11Q02978 314 aaKnown RBP7.07□□□□□ -1.28
VPS4A-203ENST00000564399 AP1B1Q10567 949 aa7.07□□□□□ -1.28
VPS4A-203ENST00000564399 ZBTB17Q13105 803 aa7.07□□□□□ -1.28
VPS4A-203ENST00000564399 ITGA9Q13797 1035 aa7.07□□□□□ -1.28
VPS4A-203ENST00000564399 DPYSL3Q14195 570 aa7.07□□□□□ -1.28
VPS4A-203ENST00000564399 ATP13A4Q4VNC1 1196 aa7.07□□□□□ -1.28
VPS4A-203ENST00000564399 CT47A1Q5JQC4 288 aaPredicted RBP7.07□□□□□ -1.28
VPS4A-203ENST00000564399 GPRC6AQ5T6X5 926 aa7.07□□□□□ -1.28
VPS4A-203ENST00000564399 ZDHHC20Q5W0Z9 365 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms