RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 CDHR3Q6ZTQ4 885 aa16.21■□□□□ 0.19
VPS4A-202ENST00000562754 GKN2Q86XP6 184 aa16.21■□□□□ 0.19
VPS4A-202ENST00000562754 MYO1HQ8N1T3 1032 aa16.21■□□□□ 0.19
VPS4A-202ENST00000562754 SLC25A45Q8N413 288 aa16.21■□□□□ 0.19
VPS4A-202ENST00000562754 BANPQ8N9N5 519 aa16.21■□□□□ 0.19
VPS4A-202ENST00000562754 PTERQ96BW5 349 aa16.21■□□□□ 0.19
VPS4A-202ENST00000562754 APOPT1Q96IL0 206 aa16.21■□□□□ 0.19
VPS4A-202ENST00000562754 GTPBP2Q9BX10 602 aaKnown RBP16.21■□□□□ 0.19
VPS4A-202ENST00000562754 WASH6PQ9NQA3 447 aa16.21■□□□□ 0.19
VPS4A-202ENST00000562754 USP34Q70CQ2 3546 aa16.2■□□□□ 0.18
VPS4A-202ENST00000562754 YY2O15391 372 aa16.2■□□□□ 0.18
VPS4A-202ENST00000562754 DFNA5O60443 496 aa16.2■□□□□ 0.18
VPS4A-202ENST00000562754 MATN4O95460 622 aa16.2■□□□□ 0.18
VPS4A-202ENST00000562754 ZNF806P0C7X5 589 aa16.2■□□□□ 0.18
VPS4A-202ENST00000562754 GIMD1P0DJR0 217 aa16.2■□□□□ 0.18
VPS4A-202ENST00000562754 F3P13726 295 aa16.2■□□□□ 0.18
VPS4A-202ENST00000562754 GLRBP48167 497 aa16.2■□□□□ 0.18
VPS4A-202ENST00000562754 CCT8P50990 548 aa16.2■□□□□ 0.18
VPS4A-202ENST00000562754 SPEM2Q0P670 501 aa16.2■□□□□ 0.18
VPS4A-202ENST00000562754 ABRQ12979 859 aa16.2■□□□□ 0.18
VPS4A-202ENST00000562754 TSNQ15631 228 aaKnown RBP16.2■□□□□ 0.18
VPS4A-202ENST00000562754 DEFB133Q30KQ1 61 aa16.2■□□□□ 0.18
VPS4A-202ENST00000562754 LRRC8EQ6NSJ5 796 aa16.2■□□□□ 0.18
VPS4A-202ENST00000562754 DUS1LQ6P1R4 473 aaKnown RBP16.2■□□□□ 0.18
VPS4A-202ENST00000562754 LVRNQ6Q4G3 990 aa16.2■□□□□ 0.18
VPS4A-202ENST00000562754 GATAD2AQ86YP4 633 aa16.2■□□□□ 0.18
VPS4A-202ENST00000562754 MINDY1Q8N5J2 469 aa16.2■□□□□ 0.18
VPS4A-202ENST00000562754 GOLGA6L1Q8N7Z2 621 aa16.2■□□□□ 0.18
VPS4A-202ENST00000562754 SAP25Q8TEE9 199 aa16.2■□□□□ 0.18
VPS4A-202ENST00000562754 SKA2Q8WVK7 121 aaPredicted RBP16.2■□□□□ 0.18
VPS4A-202ENST00000562754 PATE1Q8WXA2 126 aa16.2■□□□□ 0.18
VPS4A-202ENST00000562754 DLG3Q92796 817 aa16.2■□□□□ 0.18
VPS4A-202ENST00000562754 SMC6Q96SB8 1091 aa16.2■□□□□ 0.18
VPS4A-202ENST00000562754 INSM2Q96T92 566 aaPredicted RBP16.2■□□□□ 0.18
VPS4A-202ENST00000562754 C12orf65Q9H3J6 166 aaKnown RBP16.2■□□□□ 0.18
VPS4A-202ENST00000562754 PARD6AQ9NPB6 346 aa16.2■□□□□ 0.18
VPS4A-202ENST00000562754 NCDNQ9UBB6 729 aa16.2■□□□□ 0.18
VPS4A-202ENST00000562754 ADAMTS6Q9UKP5 1117 aa16.2■□□□□ 0.18
VPS4A-202ENST00000562754 EMCNQ9ULC0 261 aa16.2■□□□□ 0.18
VPS4A-202ENST00000562754 HCN4Q9Y3Q4 1203 aa16.2■□□□□ 0.18
VPS4A-202ENST00000562754 ACTL7BQ9Y614 415 aa16.2■□□□□ 0.18
VPS4A-202ENST00000562754 CFAP20Q9Y6A4 193 aaKnown RBP16.2■□□□□ 0.18
VPS4A-202ENST00000562754 CSNK1G3Q9Y6M4 447 aa16.2■□□□□ 0.18
VPS4A-202ENST00000562754 ANKRD12Q6UB98 2062 aa16.2■□□□□ 0.18
VPS4A-202ENST00000562754 VPS13AQ96RL7 3174 aa16.19■□□□□ 0.18
VPS4A-202ENST00000562754 OR52A4PA6NMU1 304 aa16.19■□□□□ 0.18
VPS4A-202ENST00000562754 B4DGG1 531 aa16.19■□□□□ 0.18
VPS4A-202ENST00000562754 H3BQF6 201 aa16.19■□□□□ 0.18
VPS4A-202ENST00000562754 BTN3A1O00481 513 aa16.19■□□□□ 0.18
VPS4A-202ENST00000562754 COPEO14579 308 aa16.19■□□□□ 0.18
VPS4A-202ENST00000562754 YKT6O15498 198 aa16.19■□□□□ 0.18
VPS4A-202ENST00000562754 FFAR2O15552 330 aa16.19■□□□□ 0.18
VPS4A-202ENST00000562754 TYROBPO43914 113 aa16.19■□□□□ 0.18
VPS4A-202ENST00000562754 GLRA3O75311 464 aa16.19■□□□□ 0.18
VPS4A-202ENST00000562754 ANXA6P08133 673 aa16.19■□□□□ 0.18
VPS4A-202ENST00000562754 TFEBP19484 476 aa16.19■□□□□ 0.18
VPS4A-202ENST00000562754 CRHR1P34998 444 aa16.19■□□□□ 0.18
VPS4A-202ENST00000562754 BDKRB1P46663 353 aa16.19■□□□□ 0.18
VPS4A-202ENST00000562754 ATP6V0D1P61421 351 aa16.19■□□□□ 0.18
VPS4A-202ENST00000562754 OR4D1Q15615 310 aa16.19■□□□□ 0.18
VPS4A-202ENST00000562754 RPE65Q16518 533 aa16.19■□□□□ 0.18
VPS4A-202ENST00000562754 FAM83EQ2M2I3 478 aa16.19■□□□□ 0.18
VPS4A-202ENST00000562754 TSNAXIP1Q2TAA8 658 aa16.19■□□□□ 0.18
VPS4A-202ENST00000562754 TECRLQ5HYJ1 363 aa16.19■□□□□ 0.18
VPS4A-202ENST00000562754 C16orf46Q6P387 395 aa16.19■□□□□ 0.18
VPS4A-202ENST00000562754 SBSNQ6UWP8 590 aa16.19■□□□□ 0.18
VPS4A-202ENST00000562754 NAGSQ8N159 534 aa16.19■□□□□ 0.18
VPS4A-202ENST00000562754 SDR16C5Q8N3Y7 309 aa16.19■□□□□ 0.18
VPS4A-202ENST00000562754 FAM46DQ8NEK8 389 aa16.19■□□□□ 0.18
VPS4A-202ENST00000562754 CFAP61Q8NHU2 1237 aa16.19■□□□□ 0.18
VPS4A-202ENST00000562754 ASB11Q8WXH4 323 aa16.19■□□□□ 0.18
VPS4A-202ENST00000562754 KIAA1191Q96A73 305 aa16.19■□□□□ 0.18
VPS4A-202ENST00000562754 C12orf66Q96MD2 445 aa16.19■□□□□ 0.18
VPS4A-202ENST00000562754 ALG9Q9H6U8 611 aa16.19■□□□□ 0.18
VPS4A-202ENST00000562754 NMRAL1Q9HBL8 299 aa16.19■□□□□ 0.18
VPS4A-202ENST00000562754 TMEM216Q9P0N5 145 aa16.19■□□□□ 0.18
VPS4A-202ENST00000562754 PRAMEF33A0A0G2JMD5 474 aa16.18■□□□□ 0.18
VPS4A-202ENST00000562754 KRT87PA6NCN2 255 aa16.18■□□□□ 0.18
VPS4A-202ENST00000562754 ARHGEF33A8MVX0 844 aa16.18■□□□□ 0.18
VPS4A-202ENST00000562754 HMGB1P1B2RPK0 211 aaPredicted RBP16.18■□□□□ 0.18
VPS4A-202ENST00000562754 PROB1E7EW31 1015 aa16.18■□□□□ 0.18
VPS4A-202ENST00000562754 GFYI3L273 518 aa16.18■□□□□ 0.18
VPS4A-202ENST00000562754 NOBOXO60393 691 aa16.18■□□□□ 0.18
VPS4A-202ENST00000562754 PSIP1O75475 530 aaKnown RBP16.18■□□□□ 0.18
VPS4A-202ENST00000562754 GSTA1P08263 222 aa16.18■□□□□ 0.18
VPS4A-202ENST00000562754 MTHFD1P11586 935 aaKnown RBP16.18■□□□□ 0.18
VPS4A-202ENST00000562754 SP140Q13342 867 aa16.18■□□□□ 0.18
VPS4A-202ENST00000562754 PHKG1Q16816 387 aa16.18■□□□□ 0.18
VPS4A-202ENST00000562754 PPP1R3AQ16821 1122 aa16.18■□□□□ 0.18
VPS4A-202ENST00000562754 EEF1AKMT2Q5JPI9 291 aaKnown RBP16.18■□□□□ 0.18
VPS4A-202ENST00000562754 N4BP2L1Q5TBK1 243 aaPredicted RBP16.18■□□□□ 0.18
VPS4A-202ENST00000562754 IYDQ6PHW0 289 aa16.18■□□□□ 0.18
VPS4A-202ENST00000562754 UNC5DQ6UXZ4 953 aa16.18■□□□□ 0.18
VPS4A-202ENST00000562754 ISCA2Q86U28 154 aa16.18■□□□□ 0.18
VPS4A-202ENST00000562754 LCA5Q86VQ0 697 aa16.18■□□□□ 0.18
VPS4A-202ENST00000562754 PHC3Q8NDX5 983 aa16.18■□□□□ 0.18
VPS4A-202ENST00000562754 OR5AR1Q8NGP9 310 aa16.18■□□□□ 0.18
VPS4A-202ENST00000562754 ZDHHC1Q8WTX9 485 aa16.18■□□□□ 0.18
VPS4A-202ENST00000562754 TFGQ92734 400 aaPredicted RBP16.18■□□□□ 0.18
VPS4A-202ENST00000562754 ALKBH8Q96BT7 664 aaKnown RBP16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms