RNA–Protein interactions for RNA: ENST00000562298.1

VPS9D1-AS1-201, VPS9D1 antisense RNA 1, humanhuman

TSL 1 (best)

Gene VPS9D1-AS1, Length 931 nt, Biotype antisense RNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-AS1-201ENST00000562298 RAB40ALP0C0E4 278 aa16.21■□□□□ 0.19
VPS9D1-AS1-201ENST00000562298 RBP3P10745 1247 aa16.21■□□□□ 0.19
VPS9D1-AS1-201ENST00000562298 ST6GAL1P15907 406 aa16.21■□□□□ 0.19
VPS9D1-AS1-201ENST00000562298 ITGALP20701 1170 aa16.21■□□□□ 0.19
VPS9D1-AS1-201ENST00000562298 PRDX3P30048 256 aaKnown RBP16.21■□□□□ 0.19
VPS9D1-AS1-201ENST00000562298 EIF3EP60228 445 aaKnown RBP16.21■□□□□ 0.19
VPS9D1-AS1-201ENST00000562298 SPARCL1Q14515 664 aa16.21■□□□□ 0.19
VPS9D1-AS1-201ENST00000562298 PRPSAP1Q14558 356 aa16.21■□□□□ 0.19
VPS9D1-AS1-201ENST00000562298 FAM198BQ6UWH4 519 aa16.21■□□□□ 0.19
VPS9D1-AS1-201ENST00000562298 OR52E1Q8NGJ3 308 aa16.21■□□□□ 0.19
VPS9D1-AS1-201ENST00000562298 LCN9Q8WX39 176 aa16.21■□□□□ 0.19
VPS9D1-AS1-201ENST00000562298 CLIP3Q96DZ5 547 aa16.21■□□□□ 0.19
VPS9D1-AS1-201ENST00000562298 SPATA13Q96N96 652 aa16.21■□□□□ 0.19
VPS9D1-AS1-201ENST00000562298 C19orf43Q9BQ61 176 aa16.21■□□□□ 0.19
VPS9D1-AS1-201ENST00000562298 TBL1YQ9BQ87 522 aa16.21■□□□□ 0.19
VPS9D1-AS1-201ENST00000562298 FERMT1Q9BQL6 677 aa16.21■□□□□ 0.19
VPS9D1-AS1-201ENST00000562298 PITPNM3Q9BZ71 974 aa16.21■□□□□ 0.19
VPS9D1-AS1-201ENST00000562298 OSBPL8Q9BZF1 889 aa16.21■□□□□ 0.19
VPS9D1-AS1-201ENST00000562298 FANCEQ9HB96 536 aa16.21■□□□□ 0.19
VPS9D1-AS1-201ENST00000562298 PCMTD2Q9NV79 361 aa16.21■□□□□ 0.19
VPS9D1-AS1-201ENST00000562298 TCFL5Q9UL49 500 aa16.21■□□□□ 0.19
VPS9D1-AS1-201ENST00000562298 TRBV5-4A0A0C4DH59 114 aa16.2■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 CFAP99D6REC4 459 aa16.2■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 CEACAM4O75871 244 aa16.2■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 SORBS2O94875 1100 aaKnown RBP16.2■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 MSL3P1P0C860 447 aa16.2■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 PRSS56P0CW18 603 aa16.2■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 GNLYP22749 145 aa16.2■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 ACRV1P26436 265 aa16.2■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 PDHA2P29803 388 aa16.2■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 MC4RP32245 332 aa16.2■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 PTPN7P35236 360 aa16.2■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 HADHAP40939 763 aa16.2■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 PREPP48147 710 aa16.2■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 LMAN1P49257 510 aa16.2■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 AADACL2Q6P093 401 aa16.2■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 DARS2Q6PI48 645 aaKnown RBP16.2■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 KLHDC8BQ8IXV7 354 aa16.2■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 SYTL1Q8IYJ3 562 aa16.2■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 CCDC170Q8IYT3 715 aa16.2■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 PHC3Q8NDX5 983 aa16.2■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 CPT1CQ8TCG5 803 aa16.2■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 DNAJC1Q96KC8 554 aaKnown RBP16.2■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 NLNQ9BYT8 704 aa16.2■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 KLHL25Q9H0H3 589 aa16.2■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 TFB2MQ9H5Q4 396 aaKnown RBP16.2■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 ARNT2Q9HBZ2 717 aa16.2■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 ZDHHC3Q9NYG2 299 aa16.2■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 SNX7Q9UNH6 387 aa16.2■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 VPS4BO75351 444 aa16.19■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 STK10O94804 968 aaKnown RBP16.19■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 TMEM63AO94886 807 aa16.19■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 PVRP15151 417 aa16.19■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 CYP2A7P20853 494 aa16.19■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 CTNNA2P26232 953 aa16.19■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 CD151P48509 253 aa16.19■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 ITGA1P56199 1179 aa16.19■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 SPA17Q15506 151 aa16.19■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 SKOR2Q2VWA4 1001 aaPredicted RBP16.19■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 PTCHD3Q3KNS1 767 aa16.19■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 GPR33Q49SQ1 333 aa16.19■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 SERPINA9Q86WD7 417 aa16.19■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 ADGRF3Q8IZF5 1079 aa16.19■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 CLDN19Q8N6F1 224 aa16.19■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 GALNT11Q8NCW6 608 aa16.19■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 FDCSPQ8NFU4 85 aa16.19■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 HEXDCQ8WVB3 486 aa16.19■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 ALG3Q92685 438 aa16.19■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 TRAPPC9Q96Q05 1148 aa16.19■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 XKR8Q9H6D3 395 aa16.19■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 ACTR5Q9H9F9 607 aaPredicted RBP16.19■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 SYTL2Q9HCH5 934 aa16.19■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 VPS4AQ9UN37 437 aa16.19■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 DUSP10Q9Y6W6 482 aa16.19■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 TEX15Q9BXT5 2789 aa16.19■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 H7C0S8 307 aa16.18■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 IFRD1O00458 451 aaPredicted RBP16.18■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 BOP1Q14137 746 aaKnown RBP16.18■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 ZRANB3Q5FWF4 1079 aa16.18■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 ZNF385CQ66K41 422 aaPredicted RBP16.18■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 KCTD11Q693B1 232 aa16.18■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 SARM1Q6SZW1 724 aa16.18■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 CDHR3Q6ZTQ4 885 aa16.18■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 AMIGO1Q86WK6 493 aa16.18■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 PIANPQ8IYJ0 282 aa16.18■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 ZBTB2Q8N680 514 aa16.18■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 EFCAB3Q8N7B9 438 aa16.18■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 HGH1Q9BTY7 390 aa16.18■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 NUDT9Q9BW91 350 aa16.18■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 MVB12BQ9H7P6 319 aa16.18■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 NLE1Q9NVX2 485 aaPredicted RBP16.18■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 FEZ2Q9UHY8 353 aaPredicted RBP16.18■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 MAP4K5Q9Y4K4 846 aa16.18■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 MED13Q9UHV7 2174 aa16.17■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 C2orf74A8MZ97 194 aa16.17■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 VAV2P52735 878 aa16.17■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 RWDD2BP57060 319 aa16.17■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 RPA4Q13156 261 aa16.17■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 PRKG2Q13237 762 aa16.17■□□□□ 0.18
VPS9D1-AS1-201ENST00000562298 NCF4Q15080 339 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms