RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 ABCD2Q9UBJ2 740 aa13.09□□□□□ -0.31
CLK3-206ENST00000562078 ANAPC2Q9UJX6 822 aa13.09□□□□□ -0.31
CLK3-206ENST00000562078 MYLKQ15746 1914 aa13.09□□□□□ -0.31
CLK3-206ENST00000562078 ATP6AP2A0A1C7CYW4 349 aa13.08□□□□□ -0.31
CLK3-206ENST00000562078 NR5A2O00482 541 aa13.08□□□□□ -0.31
CLK3-206ENST00000562078 ATP6AP2O75787 350 aa13.08□□□□□ -0.31
CLK3-206ENST00000562078 DNAJB5O75953 348 aa13.08□□□□□ -0.31
CLK3-206ENST00000562078 EPN2O95208 641 aa13.08□□□□□ -0.31
CLK3-206ENST00000562078 APOA1P02647 267 aa13.08□□□□□ -0.31
CLK3-206ENST00000562078 AVPR1AP37288 418 aa13.08□□□□□ -0.31
CLK3-206ENST00000562078 OLIG2Q13516 323 aa13.08□□□□□ -0.31
CLK3-206ENST00000562078 ZNF404Q494X3 552 aa13.08□□□□□ -0.31
CLK3-206ENST00000562078 ANKRD34AQ69YU3 496 aa13.08□□□□□ -0.31
CLK3-206ENST00000562078 GLB1LQ6UWU2 654 aa13.08□□□□□ -0.31
CLK3-206ENST00000562078 RPS27LQ71UM5 84 aaKnown RBP13.08□□□□□ -0.31
CLK3-206ENST00000562078 ANKRD33Q7Z3H0 272 aa13.08□□□□□ -0.31
CLK3-206ENST00000562078 STK32CQ86UX6 486 aa13.08□□□□□ -0.31
CLK3-206ENST00000562078 GLB1L3Q8NCI6 653 aaPredicted RBP13.08□□□□□ -0.31
CLK3-206ENST00000562078 ARMC5Q96C12 935 aa13.08□□□□□ -0.31
CLK3-206ENST00000562078 ZHX1-C8orf76Q96EF9 292 aa13.08□□□□□ -0.31
CLK3-206ENST00000562078 NEDD4LQ96PU5 975 aa13.08□□□□□ -0.31
CLK3-206ENST00000562078 C17orf62Q9BQA9 187 aa13.08□□□□□ -0.31
CLK3-206ENST00000562078 BCL7BQ9BQE9 202 aa13.08□□□□□ -0.31
CLK3-206ENST00000562078 MCMBPQ9BTE3 642 aa13.08□□□□□ -0.31
CLK3-206ENST00000562078 PRRG3Q9BZD7 231 aa13.08□□□□□ -0.31
CLK3-206ENST00000562078 TKTL2Q9H0I9 626 aa13.08□□□□□ -0.31
CLK3-206ENST00000562078 ZBTB20Q9HC78 741 aaPredicted RBP13.08□□□□□ -0.31
CLK3-206ENST00000562078 SLC39A10Q9ULF5 831 aa13.08□□□□□ -0.31
CLK3-206ENST00000562078 PLXNA3P51805 1871 aa13.08□□□□□ -0.32
CLK3-206ENST00000562078 DOCK4Q8N1I0 1966 aa13.08□□□□□ -0.32
CLK3-206ENST00000562078 ZNF780AO75290 641 aaPredicted RBP13.08□□□□□ -0.32
CLK3-206ENST00000562078 EOMESO95936 686 aa13.08□□□□□ -0.32
CLK3-206ENST00000562078 YES1P07947 543 aa13.08□□□□□ -0.32
CLK3-206ENST00000562078 HSD17B1P14061 328 aa13.08□□□□□ -0.32
CLK3-206ENST00000562078 DAG1Q14118 895 aa13.08□□□□□ -0.32
CLK3-206ENST00000562078 GALNT3Q14435 633 aa13.08□□□□□ -0.32
CLK3-206ENST00000562078 VPS26BQ4G0F5 336 aa13.08□□□□□ -0.32
CLK3-206ENST00000562078 BCL7AQ4VC05 210 aa13.08□□□□□ -0.32
CLK3-206ENST00000562078 VARS2Q5ST30 1063 aaKnown RBP13.08□□□□□ -0.32
CLK3-206ENST00000562078 PRSS48Q7RTY5 328 aa13.08□□□□□ -0.32
CLK3-206ENST00000562078 VN1R5Q7Z5H4 357 aa13.08□□□□□ -0.32
CLK3-206ENST00000562078 TBC1D21Q8IYX1 336 aa13.08□□□□□ -0.32
CLK3-206ENST00000562078 TCAIMQ8N3R3 496 aa13.08□□□□□ -0.32
CLK3-206ENST00000562078 KCTD4Q8WVF5 259 aa13.08□□□□□ -0.32
CLK3-206ENST00000562078 SUSD3Q96L08 255 aa13.08□□□□□ -0.32
CLK3-206ENST00000562078 RNF145Q96MT1 663 aa13.08□□□□□ -0.32
CLK3-206ENST00000562078 AMBRA1Q9C0C7 1298 aa13.08□□□□□ -0.32
CLK3-206ENST00000562078 OSBPL2Q9H1P3 480 aa13.08□□□□□ -0.32
CLK3-206ENST00000562078 WDCPQ9H6R7 721 aa13.08□□□□□ -0.32
CLK3-206ENST00000562078 SMURF2Q9HAU4 748 aa13.08□□□□□ -0.32
CLK3-206ENST00000562078 PRDM8Q9NQV8 689 aa13.08□□□□□ -0.32
CLK3-206ENST00000562078 C14orf119Q9NWQ9 140 aa13.08□□□□□ -0.32
CLK3-206ENST00000562078 FAM118AQ9NWS6 357 aa13.08□□□□□ -0.32
CLK3-206ENST00000562078 TAS2R9Q9NYW1 312 aa13.08□□□□□ -0.32
CLK3-206ENST00000562078 ERVK-18Q9QC07 812 aa13.08□□□□□ -0.32
CLK3-206ENST00000562078 VPS4AQ9UN37 437 aa13.08□□□□□ -0.32
CLK3-206ENST00000562078 NAALAD2Q9Y3Q0 740 aa13.08□□□□□ -0.32
CLK3-206ENST00000562078 MIA3Q5JRA6 1907 aa13.08□□□□□ -0.32
CLK3-206ENST00000562078 LEUTXA8MZ59 168 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 NOBOXO60393 691 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 KCNJ13O60928 360 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 NOS1APO75052 506 aaPredicted RBP13.07□□□□□ -0.32
CLK3-206ENST00000562078 OR7A10O76100 309 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 COL6A1P12109 1028 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 ACVR2AP27037 513 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 CXCR3P49682 368 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 ESCO2Q56NI9 601 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 RAP1GAP2Q684P5 730 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 PM20D1Q6GTS8 502 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 PNCKQ6P2M8 343 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 FSTL5Q8N475 847 aaPredicted RBP13.07□□□□□ -0.32
CLK3-206ENST00000562078 RNF34Q969K3 372 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 SH3KBP1Q96B97 665 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 ROPN1LQ96C74 230 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 UROC1Q96N76 676 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 BDH2Q9BUT1 245 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 ROGDIQ9GZN7 287 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 ZNF304Q9HCX3 659 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 KLHL8Q9P2G9 620 aaPredicted RBP13.07□□□□□ -0.32
CLK3-206ENST00000562078 OR12D3Q9UGF7 316 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 ADAM28Q9UKQ2 775 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 INTS6Q9UL03 887 aaKnown RBP13.07□□□□□ -0.32
CLK3-206ENST00000562078 USP22Q9UPT9 525 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 KIAA0100Q14667 2235 aaKnown RBP13.07□□□□□ -0.32
CLK3-206ENST00000562078 A8MUA0 341 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 FXYD1O00168 92 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 UPK1AO00322 258 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 GOT2P00505 430 aaKnown RBP13.07□□□□□ -0.32
CLK3-206ENST00000562078 F9P00740 461 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 OR4Q2P0C623 313 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 PCNAP12004 261 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 SLC6A2P23975 617 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 CD6P30203 668 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 EPS8Q12929 822 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 SLAMF1Q13291 335 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 TPRG1LQ5T0D9 272 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 TSTD2Q5T7W7 516 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 BEND5Q7L4P6 421 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 PID1Q7Z2X4 250 aa13.07□□□□□ -0.32
CLK3-206ENST00000562078 NRARPQ7Z6K4 114 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms