RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 FERD3LQ96RJ6 166 aa11.31□□□□□ -0.6
USP3-220ENST00000561381 COPS8Q99627 209 aa11.31□□□□□ -0.6
USP3-220ENST00000561381 KLHL25Q9H0H3 589 aa11.31□□□□□ -0.6
USP3-220ENST00000561381 COG4Q9H9E3 785 aa11.31□□□□□ -0.6
USP3-220ENST00000561381 POMT2Q9UKY4 750 aa11.31□□□□□ -0.6
USP3-220ENST00000561381 FARSAQ9Y285 508 aaKnown RBP11.31□□□□□ -0.6
USP3-220ENST00000561381 BTRCQ9Y297 605 aa11.31□□□□□ -0.6
USP3-220ENST00000561381 EFR3BQ9Y2G0 817 aa11.31□□□□□ -0.6
USP3-220ENST00000561381 AAR2Q9Y312 384 aaKnown RBP11.31□□□□□ -0.6
USP3-220ENST00000561381 REXO2Q9Y3B8 237 aaKnown RBP11.31□□□□□ -0.6
USP3-220ENST00000561381 COLEC10Q9Y6Z7 277 aa11.31□□□□□ -0.6
USP3-220ENST00000561381 SEC16AO15027 2179 aa11.31□□□□□ -0.6
USP3-220ENST00000561381 KLHL33A6NCF5 533 aa11.3□□□□□ -0.6
USP3-220ENST00000561381 ARGFXA6NJG6 315 aa11.3□□□□□ -0.6
USP3-220ENST00000561381 BTN3A1O00481 513 aa11.3□□□□□ -0.6
USP3-220ENST00000561381 PYGMP11217 842 aa11.3□□□□□ -0.6
USP3-220ENST00000561381 RALBP11234 206 aa11.3□□□□□ -0.6
USP3-220ENST00000561381 PVRP15151 417 aa11.3□□□□□ -0.6
USP3-220ENST00000561381 ST6GAL1P15907 406 aa11.3□□□□□ -0.6
USP3-220ENST00000561381 TPH1P17752 444 aa11.3□□□□□ -0.6
USP3-220ENST00000561381 ITGALP20701 1170 aa11.3□□□□□ -0.6
USP3-220ENST00000561381 NDUFS1P28331 727 aa11.3□□□□□ -0.6
USP3-220ENST00000561381 PDHA2P29803 388 aa11.3□□□□□ -0.6
USP3-220ENST00000561381 MC4RP32245 332 aa11.3□□□□□ -0.6
USP3-220ENST00000561381 PTPN7P35236 360 aa11.3□□□□□ -0.6
USP3-220ENST00000561381 CYLC1P35663 651 aaPredicted RBP11.3□□□□□ -0.6
USP3-220ENST00000561381 PTGIRP43119 386 aa11.3□□□□□ -0.6
USP3-220ENST00000561381 PREPP48147 710 aa11.3□□□□□ -0.6
USP3-220ENST00000561381 CCL11P51671 97 aa11.3□□□□□ -0.6
USP3-220ENST00000561381 PDE1BQ01064 536 aa11.3□□□□□ -0.6
USP3-220ENST00000561381 PRKAA1Q13131 559 aa11.3□□□□□ -0.6
USP3-220ENST00000561381 ZNF789Q5FWF6 425 aa11.3□□□□□ -0.6
USP3-220ENST00000561381 TMTC4Q5T4D3 741 aa11.3□□□□□ -0.6
USP3-220ENST00000561381 SNX20Q7Z614 316 aa11.3□□□□□ -0.6
USP3-220ENST00000561381 ACVR1CQ8NER5 493 aa11.3□□□□□ -0.6
USP3-220ENST00000561381 OR8K5Q8NH50 307 aa11.3□□□□□ -0.6
USP3-220ENST00000561381 OR1L3Q8NH93 324 aa11.3□□□□□ -0.6
USP3-220ENST00000561381 LCN9Q8WX39 176 aa11.3□□□□□ -0.6
USP3-220ENST00000561381 THAP4Q8WY91 577 aa11.3□□□□□ -0.6
USP3-220ENST00000561381 ULK4Q96C45 1275 aa11.3□□□□□ -0.6
USP3-220ENST00000561381 CCM2Q9BSQ5 444 aa11.3□□□□□ -0.6
USP3-220ENST00000561381 LACRTQ9GZZ8 138 aa11.3□□□□□ -0.6
USP3-220ENST00000561381 OR52A5Q9H2C5 316 aa11.3□□□□□ -0.6
USP3-220ENST00000561381 SRMSQ9H3Y6 488 aa11.3□□□□□ -0.6
USP3-220ENST00000561381 XKR8Q9H6D3 395 aa11.3□□□□□ -0.6
USP3-220ENST00000561381 ARNT2Q9HBZ2 717 aa11.3□□□□□ -0.6
USP3-220ENST00000561381 LATS2Q9NRM7 1088 aa11.3□□□□□ -0.6
USP3-220ENST00000561381 PIH1D1Q9NWS0 290 aaKnown RBP11.3□□□□□ -0.6
USP3-220ENST00000561381 HEBP2Q9Y5Z4 205 aa11.3□□□□□ -0.6
USP3-220ENST00000561381 SPENQ96T58 3664 aaKnown RBP11.3□□□□□ -0.6
USP3-220ENST00000561381 FLNCQ14315 2725 aa11.29□□□□□ -0.6
USP3-220ENST00000561381 IGLV3-16A0A075B6K0 115 aa11.29□□□□□ -0.6
USP3-220ENST00000561381 CCDC78A2IDD5 438 aa11.29□□□□□ -0.6
USP3-220ENST00000561381 TMEM150CB9EJG8 249 aa11.29□□□□□ -0.6
USP3-220ENST00000561381 MEN1O00255 615 aa11.29□□□□□ -0.6
USP3-220ENST00000561381 STK10O94804 968 aaKnown RBP11.29□□□□□ -0.6
USP3-220ENST00000561381 ACRV1P26436 265 aa11.29□□□□□ -0.6
USP3-220ENST00000561381 PRDX3P30048 256 aaKnown RBP11.29□□□□□ -0.6
USP3-220ENST00000561381 RORAP35398 523 aa11.29□□□□□ -0.6
USP3-220ENST00000561381 UQCRFS1P47985 274 aa11.29□□□□□ -0.6
USP3-220ENST00000561381 CD97P48960 835 aa11.29□□□□□ -0.6
USP3-220ENST00000561381 LMAN1P49257 510 aa11.29□□□□□ -0.6
USP3-220ENST00000561381 NAP1L1P55209 391 aaKnown RBP11.29□□□□□ -0.6
USP3-220ENST00000561381 RWDD2BP57060 319 aa11.29□□□□□ -0.6
USP3-220ENST00000561381 PRKG2Q13237 762 aa11.29□□□□□ -0.6
USP3-220ENST00000561381 PTCHD3Q3KNS1 767 aa11.29□□□□□ -0.6
USP3-220ENST00000561381 NADK2Q4G0N4 442 aa11.29□□□□□ -0.6
USP3-220ENST00000561381 ZRANB3Q5FWF4 1079 aa11.29□□□□□ -0.6
USP3-220ENST00000561381 IZUMO3Q5VZ72 239 aa11.29□□□□□ -0.6
USP3-220ENST00000561381 KCTD11Q693B1 232 aa11.29□□□□□ -0.6
USP3-220ENST00000561381 SERPINA9Q86WD7 417 aa11.29□□□□□ -0.6
USP3-220ENST00000561381 KLHDC8BQ8IXV7 354 aa11.29□□□□□ -0.6
USP3-220ENST00000561381 PIANPQ8IYJ0 282 aa11.29□□□□□ -0.6
USP3-220ENST00000561381 DSELQ8IZU8 1212 aa11.29□□□□□ -0.6
USP3-220ENST00000561381 CARFQ8N187 725 aa11.29□□□□□ -0.6
USP3-220ENST00000561381 FAM26EQ8N5C1 309 aa11.29□□□□□ -0.6
USP3-220ENST00000561381 CLDN19Q8N6F1 224 aa11.29□□□□□ -0.6
USP3-220ENST00000561381 ENDOVQ8N8Q3 282 aaKnown RBP11.29□□□□□ -0.6
USP3-220ENST00000561381 LRRC57Q8N9N7 239 aa11.29□□□□□ -0.6
USP3-220ENST00000561381 OR52E1Q8NGJ3 308 aa11.29□□□□□ -0.6
USP3-220ENST00000561381 ADAMTS17Q8TE56 1095 aa11.29□□□□□ -0.6
USP3-220ENST00000561381 LRFN5Q96NI6 719 aa11.29□□□□□ -0.6
USP3-220ENST00000561381 FERMT1Q9BQL6 677 aa11.29□□□□□ -0.6
USP3-220ENST00000561381 HGH1Q9BTY7 390 aa11.29□□□□□ -0.6
USP3-220ENST00000561381 SLC25A23Q9BV35 468 aa11.29□□□□□ -0.6
USP3-220ENST00000561381 ING2Q9H160 280 aa11.29□□□□□ -0.6
USP3-220ENST00000561381 ACSS2Q9NR19 701 aa11.29□□□□□ -0.6
USP3-220ENST00000561381 C1GALT1Q9NS00 363 aa11.29□□□□□ -0.6
USP3-220ENST00000561381 ZDHHC3Q9NYG2 299 aa11.29□□□□□ -0.6
USP3-220ENST00000561381 EPN1Q9Y6I3 576 aaPredicted RBP11.29□□□□□ -0.6
USP3-220ENST00000561381 PIKFYVEQ9Y2I7 2098 aa11.29□□□□□ -0.6
USP3-220ENST00000561381 TRBV5-4A0A0C4DH59 114 aa11.28□□□□□ -0.6
USP3-220ENST00000561381 C17orf113A0A1B0GUU1 675 aa11.28□□□□□ -0.6
USP3-220ENST00000561381 GRID2IPA4D2P6 1211 aa11.28□□□□□ -0.6
USP3-220ENST00000561381 TTLL8A6PVC2 850 aa11.28□□□□□ -0.6
USP3-220ENST00000561381 CFAP99D6REC4 459 aa11.28□□□□□ -0.6
USP3-220ENST00000561381 IFRD1O00458 451 aaPredicted RBP11.28□□□□□ -0.6
USP3-220ENST00000561381 TJP3O95049 919 aa11.28□□□□□ -0.6
USP3-220ENST00000561381 METTL18O95568 372 aa11.28□□□□□ -0.6
USP3-220ENST00000561381 KLK3P07288 261 aaPredicted RBP11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms