RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 TMEM237Q96Q45 408 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 TUBGCP5Q96RT8 1024 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 TBCDQ9BTW9 1192 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 CEP44Q9C0F1 390 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 TRIT1Q9H3H1 467 aaKnown RBP5.34□□□□□ -1.55
VPS13C-209ENST00000560637 SGK2Q9HBY8 427 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 RIC8BQ9NVN3 520 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 ATXN10Q9UBB4 475 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 TRPC4Q9UBN4 977 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 BAG5Q9UL15 447 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 ARL2BPQ9Y2Y0 163 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 CDH23Q9H251 3354 aa5.34□□□□□ -1.55
VPS13C-209ENST00000560637 TMEM202A6NGA9 273 aa5.34□□□□□ -1.56
VPS13C-209ENST00000560637 WASH4PA8MWX3 477 aa5.34□□□□□ -1.56
VPS13C-209ENST00000560637 GNGT2O14610 69 aa5.34□□□□□ -1.56
VPS13C-209ENST00000560637 UBDO15205 165 aa5.34□□□□□ -1.56
VPS13C-209ENST00000560637 DCTN3O75935 186 aa5.34□□□□□ -1.56
VPS13C-209ENST00000560637 IPO13O94829 963 aaKnown RBP5.34□□□□□ -1.56
VPS13C-209ENST00000560637 KLHL2O95198 593 aa5.34□□□□□ -1.56
VPS13C-209ENST00000560637 GSNP06396 782 aa5.34□□□□□ -1.56
VPS13C-209ENST00000560637 C1SP09871 688 aa5.34□□□□□ -1.56
VPS13C-209ENST00000560637 DDX5P17844 614 aaKnown RBP5.34□□□□□ -1.56
VPS13C-209ENST00000560637 CD6P30203 668 aa5.34□□□□□ -1.56
VPS13C-209ENST00000560637 SSR2P43308 183 aa5.34□□□□□ -1.56
VPS13C-209ENST00000560637 BLKP51451 505 aa5.34□□□□□ -1.56
VPS13C-209ENST00000560637 PTSQ03393 145 aa5.34□□□□□ -1.56
VPS13C-209ENST00000560637 MTAPQ13126 283 aa5.34□□□□□ -1.56
VPS13C-209ENST00000560637 TMEM198Q66K66 360 aa5.34□□□□□ -1.56
VPS13C-209ENST00000560637 CAPN13Q6MZZ7 669 aaPredicted RBP5.34□□□□□ -1.56
VPS13C-209ENST00000560637 KIAA0408Q6ZU52 694 aa5.34□□□□□ -1.56
VPS13C-209ENST00000560637 ZNF534Q76KX8 674 aa5.34□□□□□ -1.56
VPS13C-209ENST00000560637 TMEM135Q86UB9 458 aa5.34□□□□□ -1.56
VPS13C-209ENST00000560637 CUZD1Q86UP6 607 aa5.34□□□□□ -1.56
VPS13C-209ENST00000560637 ALYREFQ86V81 257 aaKnown RBP5.34□□□□□ -1.56
VPS13C-209ENST00000560637 LCA5Q86VQ0 697 aa5.34□□□□□ -1.56
VPS13C-209ENST00000560637 SPATA24Q86W54 205 aa5.34□□□□□ -1.56
VPS13C-209ENST00000560637 MREGQ8N565 214 aa5.34□□□□□ -1.56
VPS13C-209ENST00000560637 OR13H1Q8NG92 308 aa5.34□□□□□ -1.56
VPS13C-209ENST00000560637 OR5AR1Q8NGP9 310 aa5.34□□□□□ -1.56
VPS13C-209ENST00000560637 DTX3LQ8TDB6 740 aa5.34□□□□□ -1.56
VPS13C-209ENST00000560637 BTN2A2Q8WVV5 523 aa5.34□□□□□ -1.56
VPS13C-209ENST00000560637 CCDC126Q96EE4 140 aa5.34□□□□□ -1.56
VPS13C-209ENST00000560637 MAGEB18Q96M61 343 aa5.34□□□□□ -1.56
VPS13C-209ENST00000560637 TGM7Q96PF1 710 aa5.34□□□□□ -1.56
VPS13C-209ENST00000560637 OR2M4Q96R27 311 aa5.34□□□□□ -1.56
VPS13C-209ENST00000560637 NELL2Q99435 816 aa5.34□□□□□ -1.56
VPS13C-209ENST00000560637 CCM2Q9BSQ5 444 aa5.34□□□□□ -1.56
VPS13C-209ENST00000560637 LTB4R2Q9NPC1 389 aa5.34□□□□□ -1.56
VPS13C-209ENST00000560637 CCDC177Q9NQR7 707 aaPredicted RBP5.34□□□□□ -1.56
VPS13C-209ENST00000560637 HRASLS2Q9NWW9 162 aa5.34□□□□□ -1.56
VPS13C-209ENST00000560637 MAP10Q9P2G4 905 aa5.34□□□□□ -1.56
VPS13C-209ENST00000560637 FBXW2Q9UKT8 454 aa5.34□□□□□ -1.56
VPS13C-209ENST00000560637 PADI4Q9UM07 663 aa5.34□□□□□ -1.56
VPS13C-209ENST00000560637 SUFUQ9UMX1 484 aa5.34□□□□□ -1.56
VPS13C-209ENST00000560637 AURKCQ9UQB9 309 aa5.34□□□□□ -1.56
VPS13C-209ENST00000560637 TDRD15B5MCY1 1934 aaKnown RBP5.34□□□□□ -1.56
VPS13C-209ENST00000560637 PIEZO1Q92508 2521 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 EIF4E1BA6NMX2 242 aaKnown RBP5.33□□□□□ -1.56
VPS13C-209ENST00000560637 ZNF487B1APH4 448 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 KPNA5O15131 536 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 ITM2AO43736 263 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 PRLP01236 227 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 OGNP20774 298 aaKnown RBP5.33□□□□□ -1.56
VPS13C-209ENST00000560637 ACRV1P26436 265 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 TNFRSF8P28908 595 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 RASSF2P50749 326 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 WDR4P57081 412 aaKnown RBP5.33□□□□□ -1.56
VPS13C-209ENST00000560637 KCNK10P57789 538 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 PHEXP78562 749 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 DSG2Q14126 1118 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 UBAP2LQ14157 1087 aaKnown RBP5.33□□□□□ -1.56
VPS13C-209ENST00000560637 MPP2Q14168 576 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 TRIM61Q5EBN2 209 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 TJAP1Q5JTD0 557 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 TCHHL1Q5QJ38 904 aaPredicted RBP5.33□□□□□ -1.56
VPS13C-209ENST00000560637 FAM219BQ5XKK7 198 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 DENND5AQ6IQ26 1287 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 KYAT3Q6YP21 454 aaKnown RBP5.33□□□□□ -1.56
VPS13C-209ENST00000560637 FAM92BQ6ZTR7 304 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 SYT12Q8IV01 421 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 GPR65Q8IYL9 337 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 GPR135Q8IZ08 494 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 PNPT1Q8TCS8 783 aaKnown RBP5.33□□□□□ -1.56
VPS13C-209ENST00000560637 PDXPQ96GD0 296 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 UCN2Q96RP3 112 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 LGR4Q9BXB1 951 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 WDR41Q9HAD4 459 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 THAP1Q9NVV9 213 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 SLC13A4Q9UKG4 626 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 POLR3HQ9Y535 204 aaPredicted RBP5.33□□□□□ -1.56
VPS13C-209ENST00000560637 PTGDR2Q9Y5Y4 395 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 USH1CQ9Y6N9 552 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 TRPM6Q9BX84 2022 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 QSOX1O00391 747 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 DLX3O60479 287 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 BPGMP07738 259 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 ALPPL2P10696 532 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 PVRP15151 417 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 GRK2P25098 689 aa5.33□□□□□ -1.56
VPS13C-209ENST00000560637 MNAT1P51948 309 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms