RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, human

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-223	ENST00000560445	POMT2	Q9UKY4	750 aa		13.71	□□□□□ -0.21
TPM1-223	ENST00000560445	G3BP2	Q9UN86	482 aa	Known RBP	13.71	□□□□□ -0.21
TPM1-223	ENST00000560445	MRFAP1	Q9Y605	127 aa		13.71	□□□□□ -0.21
TPM1-223	ENST00000560445	MROH6	A6NGR9	719 aa		13.7	□□□□□ -0.22
TPM1-223	ENST00000560445	NKX2-8	O15522	239 aa		13.7	□□□□□ -0.22
TPM1-223	ENST00000560445	LIAS	O43766	372 aa		13.7	□□□□□ -0.22
TPM1-223	ENST00000560445	KATNA1	O75449	491 aa		13.7	□□□□□ -0.22
TPM1-223	ENST00000560445	SCRG1	O75711	98 aa		13.7	□□□□□ -0.22
TPM1-223	ENST00000560445	SUN1	O94901	812 aa		13.7	□□□□□ -0.22
TPM1-223	ENST00000560445	WISP1	O95388	367 aa		13.7	□□□□□ -0.22
TPM1-223	ENST00000560445	CCDC175	P0C221	793 aa		13.7	□□□□□ -0.22
TPM1-223	ENST00000560445	ADRA1D	P25100	572 aa		13.7	□□□□□ -0.22
TPM1-223	ENST00000560445	PSMA3	P25788	255 aa		13.7	□□□□□ -0.22
TPM1-223	ENST00000560445	CSRP3	P50461	194 aa		13.7	□□□□□ -0.22
TPM1-223	ENST00000560445	PRAME	P78395	509 aa		13.7	□□□□□ -0.22
TPM1-223	ENST00000560445	OLIG2	Q13516	323 aa		13.7	□□□□□ -0.22
TPM1-223	ENST00000560445	DEFB109B	Q30KR1	87 aa		13.7	□□□□□ -0.22
TPM1-223	ENST00000560445	AMIGO1	Q86WK6	493 aa		13.7	□□□□□ -0.22
TPM1-223	ENST00000560445	SLC13A5	Q86YT5	568 aa	Predicted RBP	13.7	□□□□□ -0.22
TPM1-223	ENST00000560445	UNC5B	Q8IZJ1	945 aa		13.7	□□□□□ -0.22
TPM1-223	ENST00000560445	PPHLN1	Q8NEY8	458 aa	Known RBP	13.7	□□□□□ -0.22
TPM1-223	ENST00000560445	THAP4	Q8WY91	577 aa		13.7	□□□□□ -0.22
TPM1-223	ENST00000560445	TFG	Q92734	400 aa	Predicted RBP	13.7	□□□□□ -0.22
TPM1-223	ENST00000560445	N4BP2L2	Q92802	583 aa	Predicted RBP	13.7	□□□□□ -0.22
TPM1-223	ENST00000560445	LRFN5	Q96NI6	719 aa		13.7	□□□□□ -0.22
TPM1-223	ENST00000560445	DPH2	Q9BQC3	489 aa	Predicted RBP	13.7	□□□□□ -0.22
TPM1-223	ENST00000560445	SLC7A5P2	Q9GIP4	190 aa		13.7	□□□□□ -0.22
TPM1-223	ENST00000560445	OR52A5	Q9H2C5	316 aa		13.7	□□□□□ -0.22
TPM1-223	ENST00000560445	FAM96A	Q9H5X1	160 aa		13.7	□□□□□ -0.22
TPM1-223	ENST00000560445	IL17B	Q9UHF5	180 aa		13.7	□□□□□ -0.22
TPM1-223	ENST00000560445	GUCA1B	Q9UMX6	200 aa		13.7	□□□□□ -0.22
TPM1-223	ENST00000560445	CAPN6	Q9Y6Q1	641 aa		13.7	□□□□□ -0.22
TPM1-223	ENST00000560445	PIPSL	A2A3N6	862 aa		13.69	□□□□□ -0.22
TPM1-223	ENST00000560445	PFDN6	O15212	129 aa		13.69	□□□□□ -0.22
TPM1-223	ENST00000560445	SUV39H1	O43463	412 aa		13.69	□□□□□ -0.22
TPM1-223	ENST00000560445	SGTA	O43765	313 aa		13.69	□□□□□ -0.22
TPM1-223	ENST00000560445	CREG1	O75629	220 aa		13.69	□□□□□ -0.22
TPM1-223	ENST00000560445	CD63	P08962	238 aa		13.69	□□□□□ -0.22
TPM1-223	ENST00000560445	EBLN1	P0CF75	366 aa		13.69	□□□□□ -0.22
TPM1-223	ENST00000560445	FOLR1	P15328	257 aa		13.69	□□□□□ -0.22
TPM1-223	ENST00000560445	TPH1	P17752	444 aa		13.69	□□□□□ -0.22
TPM1-223	ENST00000560445	ITGB6	P18564	788 aa		13.69	□□□□□ -0.22
TPM1-223	ENST00000560445	POLR2C	P19387	275 aa	Predicted RBP	13.69	□□□□□ -0.22
TPM1-223	ENST00000560445	PREP	P48147	710 aa		13.69	□□□□□ -0.22
TPM1-223	ENST00000560445	SEMA5A	Q13591	1074 aa		13.69	□□□□□ -0.22
TPM1-223	ENST00000560445	BOP1	Q14137	746 aa	Known RBP	13.69	□□□□□ -0.22
TPM1-223	ENST00000560445	TMED2	Q15363	201 aa		13.69	□□□□□ -0.22
TPM1-223	ENST00000560445	OASL	Q15646	514 aa	Known RBP	13.69	□□□□□ -0.22
TPM1-223	ENST00000560445	DBN1	Q16643	649 aa		13.69	□□□□□ -0.22
TPM1-223	ENST00000560445	LACTB2	Q53H82	288 aa	Predicted RBP	13.69	□□□□□ -0.22
TPM1-223	ENST00000560445	FASTKD1	Q53R41	847 aa	Known RBP	13.69	□□□□□ -0.22
TPM1-223	ENST00000560445	ARMC3	Q5W041	872 aa		13.69	□□□□□ -0.22
TPM1-223	ENST00000560445	PWWP2B	Q6NUJ5	590 aa		13.69	□□□□□ -0.22
TPM1-223	ENST00000560445	DUS1L	Q6P1R4	473 aa	Known RBP	13.69	□□□□□ -0.22
TPM1-223	ENST00000560445	SYVN1	Q86TM6	617 aa		13.69	□□□□□ -0.22
TPM1-223	ENST00000560445	TBC1D21	Q8IYX1	336 aa		13.69	□□□□□ -0.22
TPM1-223	ENST00000560445	SPDYE1	Q8NFV5	336 aa	Predicted RBP	13.69	□□□□□ -0.22
TPM1-223	ENST00000560445	TRIM58	Q8NG06	486 aa		13.69	□□□□□ -0.22
TPM1-223	ENST00000560445	OR4E2	Q8NGC2	313 aa		13.69	□□□□□ -0.22
TPM1-223	ENST00000560445	GSDMB	Q8TAX9	411 aa		13.69	□□□□□ -0.22
TPM1-223	ENST00000560445	ELMO1	Q92556	727 aa		13.69	□□□□□ -0.22
TPM1-223	ENST00000560445	TWSG1	Q9GZX9	223 aa		13.69	□□□□□ -0.22
TPM1-223	ENST00000560445	EIF2B3	Q9NR50	452 aa	Known RBP	13.69	□□□□□ -0.22
TPM1-223	ENST00000560445	RAB6B	Q9NRW1	208 aa		13.69	□□□□□ -0.22
TPM1-223	ENST00000560445	SERTAD3	Q9UJW9	196 aa		13.69	□□□□□ -0.22
TPM1-223	ENST00000560445	ASF1A	Q9Y294	204 aa		13.69	□□□□□ -0.22
TPM1-223	ENST00000560445	R3HDM2	Q9Y2K5	976 aa	Known RBP	13.69	□□□□□ -0.22
TPM1-223	ENST00000560445	PIKFYVE	Q9Y2I7	2098 aa		13.68	□□□□□ -0.22
TPM1-223	ENST00000560445	CCDC78	A2IDD5	438 aa		13.68	□□□□□ -0.22
TPM1-223	ENST00000560445	RFPL1	O75677	317 aa		13.68	□□□□□ -0.22
TPM1-223	ENST00000560445	APRT	P07741	180 aa		13.68	□□□□□ -0.22
TPM1-223	ENST00000560445	ZNF28	P17035	718 aa		13.68	□□□□□ -0.22
TPM1-223	ENST00000560445	CYP2A7	P20853	494 aa		13.68	□□□□□ -0.22
TPM1-223	ENST00000560445	PTPN4	P29074	926 aa		13.68	□□□□□ -0.22
TPM1-223	ENST00000560445	OAS2	P29728	719 aa	Known RBP	13.68	□□□□□ -0.22
TPM1-223	ENST00000560445	TTPA	P49638	278 aa		13.68	□□□□□ -0.22
TPM1-223	ENST00000560445	KPNA2	P52292	529 aa	Known RBP	13.68	□□□□□ -0.22
TPM1-223	ENST00000560445	GDF10	P55107	478 aa		13.68	□□□□□ -0.22
TPM1-223	ENST00000560445	CCNG2	Q16589	344 aa		13.68	□□□□□ -0.22
TPM1-223	ENST00000560445	DNAJC21	Q5F1R6	531 aa	Known RBP	13.68	□□□□□ -0.22
TPM1-223	ENST00000560445	DRICH1	Q6PGQ1	229 aa	Predicted RBP	13.68	□□□□□ -0.22
TPM1-223	ENST00000560445	ZNF662	Q6ZS27	426 aa		13.68	□□□□□ -0.22
TPM1-223	ENST00000560445	GSTA5	Q7RTV2	222 aa		13.68	□□□□□ -0.22
TPM1-223	ENST00000560445	GPR135	Q8IZ08	494 aa		13.68	□□□□□ -0.22
TPM1-223	ENST00000560445	MPP5	Q8N3R9	675 aa		13.68	□□□□□ -0.22
TPM1-223	ENST00000560445	OR52K1	Q8NGK4	314 aa		13.68	□□□□□ -0.22
TPM1-223	ENST00000560445	CT55	Q8WUE5	264 aa		13.68	□□□□□ -0.22
TPM1-223	ENST00000560445	ATG4A	Q8WYN0	398 aa		13.68	□□□□□ -0.22
TPM1-223	ENST00000560445	SGSM3	Q96HU1	749 aa		13.68	□□□□□ -0.22
TPM1-223	ENST00000560445	PITPNM3	Q9BZ71	974 aa		13.68	□□□□□ -0.22
TPM1-223	ENST00000560445	OR6C2	Q9NZP2	312 aa		13.68	□□□□□ -0.22
TPM1-223	ENST00000560445	MAN2B2	Q9Y2E5	1009 aa		13.68	□□□□□ -0.22
TPM1-223	ENST00000560445	PADI2	Q9Y2J8	665 aa		13.68	□□□□□ -0.22
TPM1-223	ENST00000560445		C9J4A7	227 aa		13.67	□□□□□ -0.22
TPM1-223	ENST00000560445	CCL22	O00626	93 aa		13.67	□□□□□ -0.22
TPM1-223	ENST00000560445	KPNA5	O15131	536 aa		13.67	□□□□□ -0.22
TPM1-223	ENST00000560445	APOA4	P06727	396 aa		13.67	□□□□□ -0.22
TPM1-223	ENST00000560445	PRDX3	P30048	256 aa	Known RBP	13.67	□□□□□ -0.22
TPM1-223	ENST00000560445	CA5A	P35218	305 aa		13.67	□□□□□ -0.22
TPM1-223	ENST00000560445	PMS2	P54278	862 aa		13.67	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms