RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 SLC36A4Q6YBV0 504 aa5.87□□□□□ -1.47
RTF1-204ENST00000558117 C9orf47Q6ZRZ4 202 aa5.87□□□□□ -1.47
RTF1-204ENST00000558117 C1orf122Q6ZSJ8 110 aa5.87□□□□□ -1.47
RTF1-204ENST00000558117 DPP10Q8N608 796 aa5.87□□□□□ -1.47
RTF1-204ENST00000558117 SCAIQ8N9R8 606 aa5.87□□□□□ -1.47
RTF1-204ENST00000558117 NAXEQ8NCW5 288 aa5.87□□□□□ -1.47
RTF1-204ENST00000558117 SPATA3Q8NHX4 192 aa5.87□□□□□ -1.47
RTF1-204ENST00000558117 RNFT2Q96EX2 444 aa5.87□□□□□ -1.47
RTF1-204ENST00000558117 CDHR1Q96JP9 859 aa5.87□□□□□ -1.47
RTF1-204ENST00000558117 ZSCAN31Q96LW9 406 aaPredicted RBP5.87□□□□□ -1.47
RTF1-204ENST00000558117 TWNKQ96RR1 684 aa5.87□□□□□ -1.47
RTF1-204ENST00000558117 PYM1Q9BRP8 204 aaKnown RBP5.87□□□□□ -1.47
RTF1-204ENST00000558117 POLR3CQ9BUI4 534 aaPredicted RBP5.87□□□□□ -1.47
RTF1-204ENST00000558117 LRRCC1Q9C099 1032 aa5.87□□□□□ -1.47
RTF1-204ENST00000558117 RBM38Q9H0Z9 239 aaKnown RBP5.87□□□□□ -1.47
RTF1-204ENST00000558117 ACTR5Q9H9F9 607 aaPredicted RBP5.87□□□□□ -1.47
RTF1-204ENST00000558117 NOD2Q9HC29 1040 aa5.87□□□□□ -1.47
RTF1-204ENST00000558117 VAT1LQ9HCJ6 419 aa5.87□□□□□ -1.47
RTF1-204ENST00000558117 ASCL3Q9NQ33 180 aa5.87□□□□□ -1.47
RTF1-204ENST00000558117 RASSF1Q9NS23 344 aa5.87□□□□□ -1.47
RTF1-204ENST00000558117 DONSONQ9NYP3 566 aa5.87□□□□□ -1.47
RTF1-204ENST00000558117 SLC9A2Q9UBY0 812 aa5.87□□□□□ -1.47
RTF1-204ENST00000558117 PIN4Q9Y237 131 aaKnown RBP5.87□□□□□ -1.47
RTF1-204ENST00000558117 SF3B1O75533 1304 aaKnown RBP eCLIP5.87□□□□□ -1.47
RTF1-204ENST00000558117 MYLKQ15746 1914 aa5.86□□□□□ -1.47
RTF1-204ENST00000558117 TARSL2A2RTX5 802 aaKnown RBP5.86□□□□□ -1.47
RTF1-204ENST00000558117 ARL5CA6NH57 179 aa5.86□□□□□ -1.47
RTF1-204ENST00000558117 SAC3D1A6NKF1 404 aa5.86□□□□□ -1.47
RTF1-204ENST00000558117 MDM4O15151 490 aa5.86□□□□□ -1.47
RTF1-204ENST00000558117 KCNAB3O43448 404 aa5.86□□□□□ -1.47
RTF1-204ENST00000558117 TADA2AO75478 443 aa5.86□□□□□ -1.47
RTF1-204ENST00000558117 SEC24AO95486 1093 aa5.86□□□□□ -1.47
RTF1-204ENST00000558117 PRAMEF12O95522 483 aa5.86□□□□□ -1.47
RTF1-204ENST00000558117 DDAH2O95865 285 aa5.86□□□□□ -1.47
RTF1-204ENST00000558117 IFNA2P01563 188 aa5.86□□□□□ -1.47
RTF1-204ENST00000558117 GNSP15586 552 aa5.86□□□□□ -1.47
RTF1-204ENST00000558117 TNFSF8P32971 234 aa5.86□□□□□ -1.47
RTF1-204ENST00000558117 UQCRFS1P47985 274 aa5.86□□□□□ -1.47
RTF1-204ENST00000558117 MTNR1AP48039 350 aa5.86□□□□□ -1.47
RTF1-204ENST00000558117 ACADVLP49748 655 aa5.86□□□□□ -1.47
RTF1-204ENST00000558117 DNAJC3Q13217 504 aa5.86□□□□□ -1.47
RTF1-204ENST00000558117 IL13RA2Q14627 380 aa5.86□□□□□ -1.47
RTF1-204ENST00000558117 INTS11Q5TA45 600 aaKnown RBP5.86□□□□□ -1.47
RTF1-204ENST00000558117 NAPEPLDQ6IQ20 393 aa5.86□□□□□ -1.47
RTF1-204ENST00000558117 MZT2BQ6NZ67 158 aa5.86□□□□□ -1.47
RTF1-204ENST00000558117 AADACL2Q6P093 401 aa5.86□□□□□ -1.47
RTF1-204ENST00000558117 IL27RAQ6UWB1 636 aa5.86□□□□□ -1.47
RTF1-204ENST00000558117 C16orf54Q6UWD8 224 aa5.86□□□□□ -1.47
RTF1-204ENST00000558117 SPNS3Q6ZMD2 512 aa5.86□□□□□ -1.47
RTF1-204ENST00000558117 ZNF517Q6ZMY9 492 aaPredicted RBP5.86□□□□□ -1.47
RTF1-204ENST00000558117 CEP57Q86XR8 500 aa5.86□□□□□ -1.47
RTF1-204ENST00000558117 ZDHHC17Q8IUH5 632 aa5.86□□□□□ -1.47
RTF1-204ENST00000558117 CPOQ8IVL8 374 aa5.86□□□□□ -1.47
RTF1-204ENST00000558117 FAM217AQ8IXS0 508 aa5.86□□□□□ -1.47
RTF1-204ENST00000558117 SAMD14Q8IZD0 417 aaPredicted RBP5.86□□□□□ -1.47
RTF1-204ENST00000558117 LSMEM2Q8N112 164 aa5.86□□□□□ -1.47
RTF1-204ENST00000558117 KDM1BQ8NB78 822 aa5.86□□□□□ -1.47
RTF1-204ENST00000558117 LEMD2Q8NC56 503 aa5.86□□□□□ -1.47
RTF1-204ENST00000558117 ENGASEQ8NFI3 743 aa5.86□□□□□ -1.47
RTF1-204ENST00000558117 RFFLQ8WZ73 363 aa5.86□□□□□ -1.47
RTF1-204ENST00000558117 SERINC2Q96SA4 455 aa5.86□□□□□ -1.47
RTF1-204ENST00000558117 MAP7D2Q96T17 732 aa5.86□□□□□ -1.47
RTF1-204ENST00000558117 PDP2Q9P2J9 529 aa5.86□□□□□ -1.47
RTF1-204ENST00000558117 TBC1D14Q9P2M4 693 aa5.86□□□□□ -1.47
RTF1-204ENST00000558117 MTRRQ9UBK8 725 aa5.86□□□□□ -1.47
RTF1-204ENST00000558117 ANAPC2Q9UJX6 822 aa5.86□□□□□ -1.47
RTF1-204ENST00000558117 NOTCH1P46531 2555 aa5.86□□□□□ -1.47
RTF1-204ENST00000558117 ACANP16112 2415 aa5.85□□□□□ -1.47
RTF1-204ENST00000558117 IGHV1OR15-9A0A0B4J2B8 117 aa5.85□□□□□ -1.47
RTF1-204ENST00000558117 VWA3AA6NCI4 1184 aa5.85□□□□□ -1.47
RTF1-204ENST00000558117 GAGE12JA6NER3 117 aa5.85□□□□□ -1.47
RTF1-204ENST00000558117 FAM90A8PA6NJQ4 464 aa5.85□□□□□ -1.47
RTF1-204ENST00000558117 K7EQS6 105 aa5.85□□□□□ -1.47
RTF1-204ENST00000558117 EIF3FO00303 357 aaPredicted RBP5.85□□□□□ -1.47
RTF1-204ENST00000558117 GPAA1O43292 621 aa5.85□□□□□ -1.47
RTF1-204ENST00000558117 KLKB1P03952 638 aa5.85□□□□□ -1.47
RTF1-204ENST00000558117 FAM90A13PP0C7W8 464 aa5.85□□□□□ -1.47
RTF1-204ENST00000558117 FAM90A24PP0C7X0 464 aa5.85□□□□□ -1.47
RTF1-204ENST00000558117 PTPN9P43378 593 aa5.85□□□□□ -1.47
RTF1-204ENST00000558117 P2RX3P56373 397 aa5.85□□□□□ -1.47
RTF1-204ENST00000558117 SLC12A1Q13621 1099 aa5.85□□□□□ -1.47
RTF1-204ENST00000558117 EFR3AQ14156 821 aa5.85□□□□□ -1.47
RTF1-204ENST00000558117 TOMM20Q15388 145 aa5.85□□□□□ -1.47
RTF1-204ENST00000558117 SYTL3Q4VX76 610 aa5.85□□□□□ -1.47
RTF1-204ENST00000558117 DCAF6Q58WW2 860 aa5.85□□□□□ -1.47
RTF1-204ENST00000558117 DENND1BQ6P3S1 775 aa5.85□□□□□ -1.47
RTF1-204ENST00000558117 RSRC2Q7L4I2 434 aaKnown RBP5.85□□□□□ -1.47
RTF1-204ENST00000558117 TRIM74Q86UV6 250 aa5.85□□□□□ -1.47
RTF1-204ENST00000558117 TRIM73Q86UV7 250 aa5.85□□□□□ -1.47
RTF1-204ENST00000558117 LRRC57Q8N9N7 239 aa5.85□□□□□ -1.47
RTF1-204ENST00000558117 CCDC26Q8TAB7 109 aa5.85□□□□□ -1.47
RTF1-204ENST00000558117 ZNF461Q8TAF7 563 aa5.85□□□□□ -1.47
RTF1-204ENST00000558117 FAR1Q8WVX9 515 aa5.85□□□□□ -1.47
RTF1-204ENST00000558117 DNASE2BQ8WZ79 361 aa5.85□□□□□ -1.47
RTF1-204ENST00000558117 CD101Q93033 1021 aa5.85□□□□□ -1.47
RTF1-204ENST00000558117 TTC14Q96N46 770 aa5.85□□□□□ -1.47
RTF1-204ENST00000558117 FRG2BQ96QU4 278 aa5.85□□□□□ -1.47
RTF1-204ENST00000558117 BOLA2Q9H3K6 86 aa5.85□□□□□ -1.47
RTF1-204ENST00000558117 MRPL44Q9H9J2 332 aaKnown RBP5.85□□□□□ -1.47
RTF1-204ENST00000558117 RIC8AQ9NPQ8 531 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms