RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 PHF19Q5T6S3 580 aa13.25□□□□□ -0.29
SHMT2-228ENST00000557302 TMEM71Q6P5X7 295 aa13.25□□□□□ -0.29
SHMT2-228ENST00000557302 TRMT10BQ6PF06 316 aaKnown RBP13.25□□□□□ -0.29
SHMT2-228ENST00000557302 KLHL35Q6PF15 583 aa13.25□□□□□ -0.29
SHMT2-228ENST00000557302 WDR74Q6RFH5 385 aaPredicted RBP13.25□□□□□ -0.29
SHMT2-228ENST00000557302 UNQ6494/PRO21346Q6UXR6 183 aa13.25□□□□□ -0.29
SHMT2-228ENST00000557302 CCDC25Q86WR0 208 aa13.25□□□□□ -0.29
SHMT2-228ENST00000557302 PALM2Q8IXS6 379 aa13.25□□□□□ -0.29
SHMT2-228ENST00000557302 OR4D9Q8NGE8 314 aa13.25□□□□□ -0.29
SHMT2-228ENST00000557302 FAM136AQ96C01 138 aa13.25□□□□□ -0.29
SHMT2-228ENST00000557302 NXPE2Q96DL1 559 aa13.25□□□□□ -0.29
SHMT2-228ENST00000557302 LIN37Q96GY3 246 aaPredicted RBP13.25□□□□□ -0.29
SHMT2-228ENST00000557302 NRSN2Q9GZP1 204 aa13.25□□□□□ -0.29
SHMT2-228ENST00000557302 SEMA6CQ9H3T2 930 aa13.25□□□□□ -0.29
SHMT2-228ENST00000557302 DMGDHQ9UI17 866 aaKnown RBP13.25□□□□□ -0.29
SHMT2-228ENST00000557302 SLC24A2Q9UI40 661 aa13.25□□□□□ -0.29
SHMT2-228ENST00000557302 ASF1AQ9Y294 204 aa13.25□□□□□ -0.29
SHMT2-228ENST00000557302 COMMD10Q9Y6G5 202 aa13.25□□□□□ -0.29
SHMT2-228ENST00000557302 USP24Q9UPU5 2620 aa13.24□□□□□ -0.29
SHMT2-228ENST00000557302 CCDC187A0A096LP49 1063 aa13.24□□□□□ -0.29
SHMT2-228ENST00000557302 IGHV5-10-1A0A0J9YXX1 117 aa13.24□□□□□ -0.29
SHMT2-228ENST00000557302 HAUS5O94927 633 aa13.24□□□□□ -0.29
SHMT2-228ENST00000557302 SLCO2B1O94956 709 aa13.24□□□□□ -0.29
SHMT2-228ENST00000557302 THRAP10827 490 aa13.24□□□□□ -0.29
SHMT2-228ENST00000557302 MPSTP25325 297 aa13.24□□□□□ -0.29
SHMT2-228ENST00000557302 ACADLP28330 430 aa13.24□□□□□ -0.29
SHMT2-228ENST00000557302 LIMK2P53671 638 aa13.24□□□□□ -0.29
SHMT2-228ENST00000557302 MGAT5Q09328 741 aa13.24□□□□□ -0.29
SHMT2-228ENST00000557302 EIF3IQ13347 325 aaKnown RBP13.24□□□□□ -0.29
SHMT2-228ENST00000557302 TRA2AQ13595 282 aaKnown RBP eCLIP13.24□□□□□ -0.29
SHMT2-228ENST00000557302 C3orf38Q5JPI3 329 aa13.24□□□□□ -0.29
SHMT2-228ENST00000557302 TEDDM1Q5T9Z0 273 aa13.24□□□□□ -0.29
SHMT2-228ENST00000557302 CNSTQ6PJW8 725 aa13.24□□□□□ -0.29
SHMT2-228ENST00000557302 ZNF574Q6ZN55 896 aaPredicted RBP13.24□□□□□ -0.29
SHMT2-228ENST00000557302 CAPN12Q6ZSI9 719 aa13.24□□□□□ -0.29
SHMT2-228ENST00000557302 GALNT7Q86SF2 657 aa13.24□□□□□ -0.29
SHMT2-228ENST00000557302 PLXDC1Q8IUK5 500 aa13.24□□□□□ -0.29
SHMT2-228ENST00000557302 VRK3Q8IV63 474 aa13.24□□□□□ -0.29
SHMT2-228ENST00000557302 ZBTB2Q8N680 514 aa13.24□□□□□ -0.29
SHMT2-228ENST00000557302 PHC3Q8NDX5 983 aa13.24□□□□□ -0.29
SHMT2-228ENST00000557302 ACVR1CQ8NER5 493 aa13.24□□□□□ -0.29
SHMT2-228ENST00000557302 WDR36Q8NI36 951 aaKnown RBP13.24□□□□□ -0.29
SHMT2-228ENST00000557302 JPH3Q8WXH2 748 aaPredicted RBP13.24□□□□□ -0.29
SHMT2-228ENST00000557302 RSC1A1Q92681 617 aa13.24□□□□□ -0.29
SHMT2-228ENST00000557302 CCDC74BQ96LY2 380 aa13.24□□□□□ -0.29
SHMT2-228ENST00000557302 HGH1Q9BTY7 390 aa13.24□□□□□ -0.29
SHMT2-228ENST00000557302 TMEM121BQ9BXQ6 578 aaPredicted RBP13.24□□□□□ -0.29
SHMT2-228ENST00000557302 FAM129AQ9BZQ8 928 aa13.24□□□□□ -0.29
SHMT2-228ENST00000557302 TRIT1Q9H3H1 467 aaKnown RBP13.24□□□□□ -0.29
SHMT2-228ENST00000557302 ZDHHC18Q9NUE0 388 aa13.24□□□□□ -0.29
SHMT2-228ENST00000557302 OGFRQ9NZT2 677 aa13.24□□□□□ -0.29
SHMT2-228ENST00000557302 TMEM9Q9P0T7 183 aa13.24□□□□□ -0.29
SHMT2-228ENST00000557302 ZFATQ9P243 1243 aa13.24□□□□□ -0.29
SHMT2-228ENST00000557302 CDYLQ9Y232 598 aa13.24□□□□□ -0.29
SHMT2-228ENST00000557302 IGF2RP11717 2491 aa13.24□□□□□ -0.29
SHMT2-228ENST00000557302 FREM2Q5SZK8 3169 aa13.24□□□□□ -0.29
SHMT2-228ENST00000557302 COL27A1Q8IZC6 1860 aaPredicted RBP13.23□□□□□ -0.29
SHMT2-228ENST00000557302 MN1Q10571 1320 aaPredicted RBP13.23□□□□□ -0.29
SHMT2-228ENST00000557302 C1QTNF9BB2RNN3 333 aa13.23□□□□□ -0.29
SHMT2-228ENST00000557302 ZNF500O60304 480 aaPredicted RBP13.23□□□□□ -0.29
SHMT2-228ENST00000557302 MPOP05164 745 aa13.23□□□□□ -0.29
SHMT2-228ENST00000557302 C1QTNF9P0C862 333 aa13.23□□□□□ -0.29
SHMT2-228ENST00000557302 ATP5DP30049 168 aa13.23□□□□□ -0.29
SHMT2-228ENST00000557302 MAGEA4P43358 317 aa13.23□□□□□ -0.29
SHMT2-228ENST00000557302 LSSP48449 732 aa13.23□□□□□ -0.29
SHMT2-228ENST00000557302 GABREP78334 506 aa13.23□□□□□ -0.29
SHMT2-228ENST00000557302 RTP5Q14D33 572 aa13.23□□□□□ -0.29
SHMT2-228ENST00000557302 TTLL9Q3SXZ7 439 aa13.23□□□□□ -0.29
SHMT2-228ENST00000557302 DNTTIP2Q5QJE6 756 aaKnown RBP13.23□□□□□ -0.29
SHMT2-228ENST00000557302 SNAP47Q5SQN1 464 aa13.23□□□□□ -0.29
SHMT2-228ENST00000557302 ZNF549Q6P9A3 640 aa13.23□□□□□ -0.29
SHMT2-228ENST00000557302 RAB11FIP2Q7L804 512 aa13.23□□□□□ -0.29
SHMT2-228ENST00000557302 OOSP2Q86WS3 158 aa13.23□□□□□ -0.29
SHMT2-228ENST00000557302 TBC1D21Q8IYX1 336 aa13.23□□□□□ -0.29
SHMT2-228ENST00000557302 OR5AR1Q8NGP9 310 aa13.23□□□□□ -0.29
SHMT2-228ENST00000557302 SKA2Q8WVK7 121 aaPredicted RBP13.23□□□□□ -0.29
SHMT2-228ENST00000557302 LCN9Q8WX39 176 aa13.23□□□□□ -0.29
SHMT2-228ENST00000557302 IFT81Q8WYA0 676 aa13.23□□□□□ -0.29
SHMT2-228ENST00000557302 KCNJ9Q92806 393 aa13.23□□□□□ -0.29
SHMT2-228ENST00000557302 C9orf72Q96LT7 481 aa13.23□□□□□ -0.29
SHMT2-228ENST00000557302 AARSD1Q9BTE6 412 aaKnown RBP13.23□□□□□ -0.29
SHMT2-228ENST00000557302 L2HGDHQ9H9P8 463 aa13.23□□□□□ -0.29
SHMT2-228ENST00000557302 POLR1BQ9H9Y6 1135 aa13.23□□□□□ -0.29
SHMT2-228ENST00000557302 LATS2Q9NRM7 1088 aa13.23□□□□□ -0.29
SHMT2-228ENST00000557302 MOCS1Q9NZB8 636 aa13.23□□□□□ -0.29
SHMT2-228ENST00000557302 AKAP7Q9P0M2 348 aaPredicted RBP13.23□□□□□ -0.29
SHMT2-228ENST00000557302 PDP2Q9P2J9 529 aa13.23□□□□□ -0.29
SHMT2-228ENST00000557302 SLC17A6Q9P2U8 582 aa13.23□□□□□ -0.29
SHMT2-228ENST00000557302 MTRF1LQ9UGC7 380 aaKnown RBP13.23□□□□□ -0.29
SHMT2-228ENST00000557302 POLG2Q9UHN1 485 aa13.23□□□□□ -0.29
SHMT2-228ENST00000557302 SATB2Q9UPW6 733 aa13.23□□□□□ -0.29
SHMT2-228ENST00000557302 AK5Q9Y6K8 562 aa13.23□□□□□ -0.29
SHMT2-228ENST00000557302 PLD2O14939 933 aa13.22□□□□□ -0.29
SHMT2-228ENST00000557302 HGSO14964 777 aaPredicted RBP13.22□□□□□ -0.29
SHMT2-228ENST00000557302 CAPN5O15484 640 aaPredicted RBP13.22□□□□□ -0.29
SHMT2-228ENST00000557302 KDM1AO60341 852 aa13.22□□□□□ -0.29
SHMT2-228ENST00000557302 VPS26AO75436 327 aa13.22□□□□□ -0.29
SHMT2-228ENST00000557302 AHSGP02765 367 aa13.22□□□□□ -0.29
SHMT2-228ENST00000557302 RPN2P04844 631 aa13.22□□□□□ -0.29
SHMT2-228ENST00000557302 GSTA2P09210 222 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms