RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	AP3S1	Q92572	193 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	PIGK	Q92643	395 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	HNRNPAB	Q99729	332 aa	Known RBP	4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	YIPF2	Q9BWQ6	316 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	ANKRD60	Q9BZ19	345 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	TRIT1	Q9H3H1	467 aa	Known RBP	4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	MFSD1	Q9H3U5	465 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	TFB2M	Q9H5Q4	396 aa	Known RBP	4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	NEK6	Q9HC98	313 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	ABCB8	Q9NUT2	735 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	CCDC59	Q9P031	241 aa	Known RBP	4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	PTGFRN	Q9P2B2	879 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	RNF6	Q9Y252	685 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	PCDHB3	Q9Y5E6	796 aa		4.91	□□□□□ -1.62
SYNE2-223	ENST00000557005	COL1A2	P08123	1366 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	C7orf72	A4D263	438 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	ANKDD1B	A6NHY2	528 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	SLC28A2	O43868	658 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	TLR5	O60602	858 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	EED	O75530	441 aa	Known RBP	4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	CLDN9	O95484	217 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	CKB	P12277	381 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	CYP2C18	P33260	490 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	ERVK-8	P63133	956 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	PURA	Q00577	322 aa	Known RBP	4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	SEMG2	Q02383	582 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	RELA	Q04206	551 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	USP39	Q53GS9	565 aa	Known RBP	4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	TECRL	Q5HYJ1	363 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	ZNF648	Q5T619	568 aa	Predicted RBP	4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	IDNK	Q5T6J7	187 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	INTS11	Q5TA45	600 aa	Known RBP	4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	ERAP2	Q6P179	960 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	CYP4V2	Q6ZWL3	525 aa	Predicted RBP	4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	GPRIN1	Q7Z2K8	1008 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	CARM1	Q86X55	608 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	SCML4	Q8N228	414 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	GHDC	Q8N2G8	530 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	LRRC20	Q8TCA0	184 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	STYX	Q8WUJ0	223 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	EEF1AKMT1	Q8WVE0	214 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	NARS2	Q96I59	477 aa	Known RBP	4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	HSH2D	Q96JZ2	352 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	AARSD1	Q9BTE6	412 aa	Known RBP	4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	OSBPL10	Q9BXB5	764 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	TMEM181	Q9P2C4	612 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	GIT1	Q9Y2X7	761 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	STYXL1	Q9Y6J8	313 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	SLC35F4	A4IF30	521 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	MAGEB17	A8MXT2	336 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	ZW10	O43264	779 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	ENG	P17813	658 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	LPO	P22079	712 aa	Predicted RBP	4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	GNPDA1	P46926	289 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	FBXW4	P57775	412 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	DAOA	P59103	153 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	HSPA14	Q0VDF9	509 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	GPR162	Q16538	588 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	HKDC1	Q2TB90	917 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	TBRG1	Q3YBR2	411 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	GNAS	Q5JWF2	1037 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	CPTP	Q5TA50	214 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	PAQR3	Q6TCH7	311 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	DLK2	Q6UY11	383 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	RASSF6	Q6ZTQ3	369 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	RTL3	Q8N8U3	475 aa	Known RBP	4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	PNPLA1	Q8N8W4	532 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	FAM83F	Q8NEG4	500 aa	Predicted RBP	4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	TRUB1	Q8WWH5	349 aa	Known RBP	4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	FNDC11	Q9BVV2	318 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	KIFC1	Q9BW19	673 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	NUSAP1	Q9BXS6	441 aa	Known RBP	4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	YTHDF1	Q9BYJ9	559 aa	Known RBP	4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	CHIA	Q9BZP6	476 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	FZD8	Q9H461	694 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	TMLHE	Q9NVH6	421 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	ERVK13-1	Q9NX77	482 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	GSTK1	Q9Y2Q3	226 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	RAI2	Q9Y5P3	530 aa		4.9	□□□□□ -1.62
SYNE2-223	ENST00000557005	IRS2	Q9Y4H2	1338 aa		4.9	□□□□□ -1.63
SYNE2-223	ENST00000557005	FABP12	A6NFH5	140 aa		4.9	□□□□□ -1.63
SYNE2-223	ENST00000557005	PALM2-AKAP2	B1ALY0	433 aa	Predicted RBP	4.9	□□□□□ -1.63
SYNE2-223	ENST00000557005		M0QX08	132 aa		4.9	□□□□□ -1.63
SYNE2-223	ENST00000557005	PER2	O15055	1255 aa		4.9	□□□□□ -1.63
SYNE2-223	ENST00000557005	ACOX3	O15254	700 aa		4.9	□□□□□ -1.63
SYNE2-223	ENST00000557005	KERA	O60938	352 aa		4.9	□□□□□ -1.63
SYNE2-223	ENST00000557005	PRSS56	P0CW18	603 aa		4.9	□□□□□ -1.63
SYNE2-223	ENST00000557005	PAX3	P23760	479 aa		4.9	□□□□□ -1.63
SYNE2-223	ENST00000557005	GSTM2	P28161	218 aa		4.9	□□□□□ -1.63
SYNE2-223	ENST00000557005	DNAJA1	P31689	397 aa	Known RBP	4.9	□□□□□ -1.63
SYNE2-223	ENST00000557005	ALDH7A1	P49419	539 aa	Known RBP	4.9	□□□□□ -1.63
SYNE2-223	ENST00000557005	FOXA1	P55317	472 aa		4.9	□□□□□ -1.63
SYNE2-223	ENST00000557005	ITGA1	P56199	1179 aa		4.9	□□□□□ -1.63
SYNE2-223	ENST00000557005	OR4D2	P58180	307 aa		4.9	□□□□□ -1.63
SYNE2-223	ENST00000557005	NCS1	P62166	190 aa		4.9	□□□□□ -1.63
SYNE2-223	ENST00000557005	PITX1	P78337	314 aa	Predicted RBP	4.9	□□□□□ -1.63
SYNE2-223	ENST00000557005	CREB5	Q02930	508 aa		4.9	□□□□□ -1.63
SYNE2-223	ENST00000557005	CSTF1	Q05048	431 aa	Known RBP	4.9	□□□□□ -1.63
SYNE2-223	ENST00000557005	TUBA3C	Q13748	450 aa		4.9	□□□□□ -1.63
SYNE2-223	ENST00000557005	TAF1A	Q15573	450 aa	Predicted RBP	4.9	□□□□□ -1.63

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