RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 ARGFXA6NJG6 315 aa13.59□□□□□ -0.23
SHMT2-226ENST00000556825 CST8O60676 142 aa13.59□□□□□ -0.23
SHMT2-226ENST00000556825 MRPS14O60783 128 aaKnown RBP13.59□□□□□ -0.23
SHMT2-226ENST00000556825 MT-ND2P03891 347 aa13.59□□□□□ -0.23
SHMT2-226ENST00000556825 SLC35A2P78381 396 aa13.59□□□□□ -0.23
SHMT2-226ENST00000556825 TRIP4Q15650 581 aaPredicted RBP13.59□□□□□ -0.23
SHMT2-226ENST00000556825 BAK1Q16611 211 aa13.59□□□□□ -0.23
SHMT2-226ENST00000556825 ARL13AQ5H913 290 aaPredicted RBP13.59□□□□□ -0.23
SHMT2-226ENST00000556825 MANEALQ5VSG8 457 aa13.59□□□□□ -0.23
SHMT2-226ENST00000556825 ZNF691Q5VV52 312 aa13.59□□□□□ -0.23
SHMT2-226ENST00000556825 SMIM5Q71RC9 77 aa13.59□□□□□ -0.23
SHMT2-226ENST00000556825 FAM160B2Q86V87 743 aa13.59□□□□□ -0.23
SHMT2-226ENST00000556825 ZZZ3Q8IYH5 903 aa13.59□□□□□ -0.23
SHMT2-226ENST00000556825 BPIFB1Q8TDL5 484 aa13.59□□□□□ -0.23
SHMT2-226ENST00000556825 PDLIM5Q96HC4 596 aaKnown RBP13.59□□□□□ -0.23
SHMT2-226ENST00000556825 EBNA1BP2Q99848 306 aaKnown RBP13.59□□□□□ -0.23
SHMT2-226ENST00000556825 DNAJC11Q9NVH1 559 aa13.59□□□□□ -0.23
SHMT2-226ENST00000556825 CCDC167Q9P0B6 97 aa13.59□□□□□ -0.23
SHMT2-226ENST00000556825 NYAP2Q9P242 653 aa13.59□□□□□ -0.23
SHMT2-226ENST00000556825 MUTYHQ9UIF7 546 aa13.59□□□□□ -0.23
SHMT2-226ENST00000556825 OGDHLQ9ULD0 1010 aa13.59□□□□□ -0.23
SHMT2-226ENST00000556825 ABCG2Q9UNQ0 655 aa13.59□□□□□ -0.23
SHMT2-226ENST00000556825 A0A1W2PP18 115 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 MTMR11A4FU01 709 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 MFSD2BA6NFX1 497 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 C3orf70A6NLC5 250 aaPredicted RBP13.58□□□□□ -0.24
SHMT2-226ENST00000556825 WASHC1A8K0Z3 465 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 WRBO00258 174 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 UPK1AO00322 258 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 MEIS1O00470 390 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 SDHDO14521 159 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 ONECUT3O60422 494 aaPredicted RBP13.58□□□□□ -0.24
SHMT2-226ENST00000556825 ERN1O75460 977 aaKnown RBP13.58□□□□□ -0.24
SHMT2-226ENST00000556825 PRSS23O95084 383 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 MYL3P08590 195 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 RNF224P0DH78 156 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 ITGAMP11215 1152 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 ADRA1BP35368 520 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 HERVK_113P63132 956 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 DYNLL1P63167 89 aaKnown RBP13.58□□□□□ -0.24
SHMT2-226ENST00000556825 POU5F1BQ06416 359 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 DUSP4Q13115 394 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 PTPN20Q4JDL3 420 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 FAM76BQ5HYJ3 339 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 PABPC1L2AQ5JQF8 200 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 C1orf220Q5T0J3 134 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 TXNRD3NBQ6F5E7 133 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 MAMDC2Q7Z304 686 aaPredicted RBP13.58□□□□□ -0.24
SHMT2-226ENST00000556825 ZNF431Q8TF32 576 aaPredicted RBP13.58□□□□□ -0.24
SHMT2-226ENST00000556825 PCNPQ8WW12 178 aaKnown RBP13.58□□□□□ -0.24
SHMT2-226ENST00000556825 USP7Q93009 1102 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 ACSF2Q96CM8 615 aaPredicted RBP13.58□□□□□ -0.24
SHMT2-226ENST00000556825 ZDHHC12Q96GR4 267 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 DPYSL5Q9BPU6 564 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 C11orf70Q9BRQ4 267 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 TEKT3Q9BXF9 490 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 C1QTNF1Q9BXJ1 281 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 ZNF518BQ9C0D4 1074 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 IL22Q9GZX6 179 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 OXSMQ9NWU1 459 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 BABAM2Q9NXR7 383 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 TRPS1Q9UHF7 1281 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 AGTPBP1Q9UPW5 1226 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 ALG5Q9Y673 324 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 TAF1P21675 1872 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 A0A1W2PQ09 198 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 H7C2Y5 167 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 MYL12BO14950 172 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 IPO13O94829 963 aaKnown RBP13.58□□□□□ -0.24
SHMT2-226ENST00000556825 ANGPTL1O95841 491 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 FADS2O95864 444 aaKnown RBP13.58□□□□□ -0.24
SHMT2-226ENST00000556825 PLATP00750 562 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 IFNA4P05014 189 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 MYL12AP19105 171 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 DSG3P32926 999 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 TNFSF8P32971 234 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 PIGAP37287 484 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 NRLP54845 237 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 ACY1Q03154 408 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 IL18R1Q13478 541 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 TAF1CQ15572 869 aaPredicted RBP13.58□□□□□ -0.24
SHMT2-226ENST00000556825 TATDN3Q17R31 274 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 SWI5Q1ZZU3 235 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 PTCHD3Q3KNS1 767 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 SLC35F1Q5T1Q4 408 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 ANKRD54Q6NXT1 300 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 MYCT1Q8N699 235 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 EMC1Q8N766 993 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 NLGN4YQ8NFZ3 816 aaPredicted RBP13.58□□□□□ -0.24
SHMT2-226ENST00000556825 FATE1Q969F0 183 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 TMBIM1Q969X1 311 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 ITPAQ9BY32 194 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 CPVLQ9H3G5 476 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 FAM49BQ9NUQ9 324 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 SDHAF2Q9NX18 166 aa13.58□□□□□ -0.24
SHMT2-226ENST00000556825 GPN3Q9UHW5 284 aaPredicted RBP13.58□□□□□ -0.24
SHMT2-226ENST00000556825 LY75O60449 1722 aa13.57□□□□□ -0.24
SHMT2-226ENST00000556825 LOC100130705A0A1B0GUX0 176 aa13.57□□□□□ -0.24
SHMT2-226ENST00000556825 TMEM82A0PJX8 343 aa13.57□□□□□ -0.24
SHMT2-226ENST00000556825 POLRMTO00411 1230 aaKnown RBP13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms