RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 CISD2Q8N5K1 135 aaKnown RBP9.8□□□□□ -0.84
SCFD1-220ENST00000556486 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.8□□□□□ -0.84
SCFD1-220ENST00000556486 GPR26Q8NDV2 337 aa9.8□□□□□ -0.84
SCFD1-220ENST00000556486 GLYATL1Q969I3 302 aa9.8□□□□□ -0.84
SCFD1-220ENST00000556486 MFSD3Q96ES6 412 aa9.8□□□□□ -0.84
SCFD1-220ENST00000556486 PLPPR2Q96GM1 343 aa9.8□□□□□ -0.84
SCFD1-220ENST00000556486 ZNF830Q96NB3 372 aaPredicted RBP9.8□□□□□ -0.84
SCFD1-220ENST00000556486 VPS35Q96QK1 796 aa9.8□□□□□ -0.84
SCFD1-220ENST00000556486 RANBP9Q96S59 729 aa9.8□□□□□ -0.84
SCFD1-220ENST00000556486 NUDT9Q9BW91 350 aa9.8□□□□□ -0.84
SCFD1-220ENST00000556486 BRD8Q9H0E9 1235 aa9.8□□□□□ -0.84
SCFD1-220ENST00000556486 ING2Q9H160 280 aa9.8□□□□□ -0.84
SCFD1-220ENST00000556486 SLC25A51Q9H1U9 297 aa9.8□□□□□ -0.84
SCFD1-220ENST00000556486 SOX17Q9H6I2 414 aaPredicted RBP9.8□□□□□ -0.84
SCFD1-220ENST00000556486 LHX9Q9NQ69 397 aa9.8□□□□□ -0.84
SCFD1-220ENST00000556486 POT1Q9NUX5 634 aa9.8□□□□□ -0.84
SCFD1-220ENST00000556486 ASF1BQ9NVP2 202 aa9.8□□□□□ -0.84
SCFD1-220ENST00000556486 ZNF624Q9P2J8 865 aaPredicted RBP9.8□□□□□ -0.84
SCFD1-220ENST00000556486 PADI1Q9ULC6 663 aa9.8□□□□□ -0.84
SCFD1-220ENST00000556486 SLC5A6Q9Y289 635 aa9.8□□□□□ -0.84
SCFD1-220ENST00000556486 TTLL3Q9Y4R7 772 aa9.8□□□□□ -0.84
SCFD1-220ENST00000556486 SLC30A1Q9Y6M5 507 aa9.8□□□□□ -0.84
SCFD1-220ENST00000556486 PCSK5Q92824 1860 aa9.8□□□□□ -0.84
SCFD1-220ENST00000556486 SLC22A31A6NKX4 558 aa9.79□□□□□ -0.84
SCFD1-220ENST00000556486 C3orf70A6NLC5 250 aaPredicted RBP9.79□□□□□ -0.84
SCFD1-220ENST00000556486 KMOO15229 486 aa9.79□□□□□ -0.84
SCFD1-220ENST00000556486 SUSD5O60279 629 aa9.79□□□□□ -0.84
SCFD1-220ENST00000556486 KCNJ13O60928 360 aa9.79□□□□□ -0.84
SCFD1-220ENST00000556486 MTA2O94776 668 aa9.79□□□□□ -0.84
SCFD1-220ENST00000556486 UBXN7O94888 489 aa9.79□□□□□ -0.84
SCFD1-220ENST00000556486 SLC25A14O95258 325 aaPredicted RBP9.79□□□□□ -0.84
SCFD1-220ENST00000556486 FGF5P12034 268 aa9.79□□□□□ -0.84
SCFD1-220ENST00000556486 BRAFP15056 766 aa9.79□□□□□ -0.84
SCFD1-220ENST00000556486 SSR1P43307 286 aaKnown RBP9.79□□□□□ -0.84
SCFD1-220ENST00000556486 CAPZBP47756 277 aa9.79□□□□□ -0.84
SCFD1-220ENST00000556486 UBASH3AP57075 661 aa9.79□□□□□ -0.84
SCFD1-220ENST00000556486 PPP1CAP62136 330 aa9.79□□□□□ -0.84
SCFD1-220ENST00000556486 GSTM4Q03013 218 aa9.79□□□□□ -0.84
SCFD1-220ENST00000556486 CDK18Q07002 472 aa9.79□□□□□ -0.84
SCFD1-220ENST00000556486 PDK1Q15118 436 aa9.79□□□□□ -0.84
SCFD1-220ENST00000556486 SEPT7Q16181 437 aaKnown RBP9.79□□□□□ -0.84
SCFD1-220ENST00000556486 SLC18A3Q16572 532 aa9.79□□□□□ -0.84
SCFD1-220ENST00000556486 ZNF648Q5T619 568 aaPredicted RBP9.79□□□□□ -0.84
SCFD1-220ENST00000556486 LRRC38Q5VT99 294 aa9.79□□□□□ -0.84
SCFD1-220ENST00000556486 PWWP2BQ6NUJ5 590 aa9.79□□□□□ -0.84
SCFD1-220ENST00000556486 LRFN4Q6PJG9 635 aa9.79□□□□□ -0.84
SCFD1-220ENST00000556486 CERS6Q6ZMG9 384 aa9.79□□□□□ -0.84
SCFD1-220ENST00000556486 NLRC3Q7RTR2 1065 aa9.79□□□□□ -0.84
SCFD1-220ENST00000556486 C11orf96Q7Z7L8 435 aa9.79□□□□□ -0.84
SCFD1-220ENST00000556486 ZC3H18Q86VM9 953 aaKnown RBP9.79□□□□□ -0.84
SCFD1-220ENST00000556486 ZNF547Q8IVP9 402 aa9.79□□□□□ -0.84
SCFD1-220ENST00000556486 RBMXL3Q8N7X1 1067 aaKnown RBP9.79□□□□□ -0.84
SCFD1-220ENST00000556486 CCNYQ8ND76 341 aa9.79□□□□□ -0.84
SCFD1-220ENST00000556486 FDCSPQ8NFU4 85 aa9.79□□□□□ -0.84
SCFD1-220ENST00000556486 NANOS1Q8WY41 292 aaKnown RBP9.79□□□□□ -0.84
SCFD1-220ENST00000556486 CTNNBL1Q8WYA6 563 aaPredicted RBP9.79□□□□□ -0.84
SCFD1-220ENST00000556486 KLHL6Q8WZ60 621 aa9.79□□□□□ -0.84
SCFD1-220ENST00000556486 RAPGEF5Q92565 580 aa9.79□□□□□ -0.84
SCFD1-220ENST00000556486 RSC1A1Q92681 617 aa9.79□□□□□ -0.84
SCFD1-220ENST00000556486 SNRNP40Q96DI7 357 aaKnown RBP9.79□□□□□ -0.84
SCFD1-220ENST00000556486 OR2AG1Q9H205 316 aa9.79□□□□□ -0.84
SCFD1-220ENST00000556486 OSGEPL1Q9H4B0 414 aa9.79□□□□□ -0.84
SCFD1-220ENST00000556486 SLC40A1Q9NP59 571 aa9.79□□□□□ -0.84
SCFD1-220ENST00000556486 KLC4Q9NSK0 619 aa9.79□□□□□ -0.84
SCFD1-220ENST00000556486 FRRS1LQ9P0K9 344 aa9.79□□□□□ -0.84
SCFD1-220ENST00000556486 CTTNBP2NLQ9P2B4 639 aa9.79□□□□□ -0.84
SCFD1-220ENST00000556486 SLC23A2Q9UGH3 650 aa9.79□□□□□ -0.84
SCFD1-220ENST00000556486 ITGB1BP2Q9UKP3 347 aa9.79□□□□□ -0.84
SCFD1-220ENST00000556486 PCDHB10Q9UN67 800 aa9.79□□□□□ -0.84
SCFD1-220ENST00000556486 PCDHGA6Q9Y5G7 932 aa9.79□□□□□ -0.84
SCFD1-220ENST00000556486 TACC2O95359 2948 aa9.78□□□□□ -0.84
SCFD1-220ENST00000556486 SSU72P8A0A1W2PR75 194 aa9.78□□□□□ -0.84
SCFD1-220ENST00000556486 DDX3YO15523 660 aaKnown RBP9.78□□□□□ -0.84
SCFD1-220ENST00000556486 CBX6O95503 412 aa9.78□□□□□ -0.84
SCFD1-220ENST00000556486 NDST3O95803 873 aa9.78□□□□□ -0.84
SCFD1-220ENST00000556486 EPOP01588 193 aa9.78□□□□□ -0.84
SCFD1-220ENST00000556486 TMEM253P0C7T8 217 aa9.78□□□□□ -0.84
SCFD1-220ENST00000556486 ZNF7P17097 686 aaPredicted RBP9.78□□□□□ -0.84
SCFD1-220ENST00000556486 BPIP17213 487 aa9.78□□□□□ -0.84
SCFD1-220ENST00000556486 AMD1P17707 334 aa9.78□□□□□ -0.84
SCFD1-220ENST00000556486 HMGCLP35914 325 aa9.78□□□□□ -0.84
SCFD1-220ENST00000556486 CDKN1CP49918 316 aaPredicted RBP9.78□□□□□ -0.84
SCFD1-220ENST00000556486 TPM4P67936 248 aa9.78□□□□□ -0.84
SCFD1-220ENST00000556486 DMPKQ09013 629 aa9.78□□□□□ -0.84
SCFD1-220ENST00000556486 GALNT3Q14435 633 aa9.78□□□□□ -0.84
SCFD1-220ENST00000556486 NFKBIBQ15653 356 aa9.78□□□□□ -0.84
SCFD1-220ENST00000556486 CHRNA6Q15825 494 aa9.78□□□□□ -0.84
SCFD1-220ENST00000556486 UGT8Q16880 541 aa9.78□□□□□ -0.84
SCFD1-220ENST00000556486 PLEKHN1Q494U1 663 aaPredicted RBP9.78□□□□□ -0.84
SCFD1-220ENST00000556486 CACHD1Q5VU97 1274 aa9.78□□□□□ -0.84
SCFD1-220ENST00000556486 IRGCQ6NXR0 463 aa9.78□□□□□ -0.84
SCFD1-220ENST00000556486 CAVIN1Q6NZI2 390 aaKnown RBP9.78□□□□□ -0.84
SCFD1-220ENST00000556486 CYB5D1Q6P9G0 228 aa9.78□□□□□ -0.84
SCFD1-220ENST00000556486 HDXQ7Z353 690 aa9.78□□□□□ -0.84
SCFD1-220ENST00000556486 NT5DC3Q86UY8 548 aa9.78□□□□□ -0.84
SCFD1-220ENST00000556486 LRRTM4Q86VH4 590 aa9.78□□□□□ -0.84
SCFD1-220ENST00000556486 THNSL2Q86YJ6 484 aa9.78□□□□□ -0.84
SCFD1-220ENST00000556486 CHAC2Q8WUX2 184 aa9.78□□□□□ -0.84
SCFD1-220ENST00000556486 MOCOSQ96EN8 888 aa9.78□□□□□ -0.84
SCFD1-220ENST00000556486 FCRL4Q96PJ5 515 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms