RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 LGALS16A8MUM7 142 aa12.48□□□□□ -0.41
VPS29-211ENST00000553128 CCL21O00585 134 aa12.48□□□□□ -0.41
VPS29-211ENST00000553128 SOCS6O14544 535 aa12.48□□□□□ -0.41
VPS29-211ENST00000553128 GAPDHSO14556 408 aaPredicted RBP12.48□□□□□ -0.41
VPS29-211ENST00000553128 POLBP06746 335 aa12.48□□□□□ -0.41
VPS29-211ENST00000553128 HBQ1P09105 142 aa12.48□□□□□ -0.41
VPS29-211ENST00000553128 GJC1P36383 396 aa12.48□□□□□ -0.41
VPS29-211ENST00000553128 DCDP81605 110 aaKnown RBP12.48□□□□□ -0.41
VPS29-211ENST00000553128 TMPRSS15P98073 1019 aa12.48□□□□□ -0.41
VPS29-211ENST00000553128 UBXN1Q04323 297 aa12.48□□□□□ -0.41
VPS29-211ENST00000553128 PRKD1Q15139 912 aaPredicted RBP12.48□□□□□ -0.41
VPS29-211ENST00000553128 TLR1Q15399 786 aa12.48□□□□□ -0.41
VPS29-211ENST00000553128 ZIC1Q15915 447 aa12.48□□□□□ -0.41
VPS29-211ENST00000553128 GPRC6AQ5T6X5 926 aa12.48□□□□□ -0.41
VPS29-211ENST00000553128 FAM151BQ6UXP7 276 aa12.48□□□□□ -0.41
VPS29-211ENST00000553128 LINC00696Q6ZRV3 163 aa12.48□□□□□ -0.41
VPS29-211ENST00000553128 DAAM2Q86T65 1068 aa12.48□□□□□ -0.41
VPS29-211ENST00000553128 TRIM73Q86UV7 250 aa12.48□□□□□ -0.41
VPS29-211ENST00000553128 NT5DC3Q86UY8 548 aa12.48□□□□□ -0.41
VPS29-211ENST00000553128 MMP21Q8N119 569 aa12.48□□□□□ -0.41
VPS29-211ENST00000553128 DDHD1Q8NEL9 900 aa12.48□□□□□ -0.41
VPS29-211ENST00000553128 ENOX1Q8TC92 643 aaKnown RBP12.48□□□□□ -0.41
VPS29-211ENST00000553128 ZFPM2Q8WW38 1151 aa12.48□□□□□ -0.41
VPS29-211ENST00000553128 TADA1Q96BN2 335 aa12.48□□□□□ -0.41
VPS29-211ENST00000553128 IMP4Q96G21 291 aaKnown RBP12.48□□□□□ -0.41
VPS29-211ENST00000553128 MAGEB10Q96LZ2 347 aaPredicted RBP12.48□□□□□ -0.41
VPS29-211ENST00000553128 HAUS4Q9H6D7 363 aa12.48□□□□□ -0.41
VPS29-211ENST00000553128 NDOR1Q9UHB4 597 aa12.48□□□□□ -0.41
VPS29-211ENST00000553128 FBN3Q75N90 2809 aa12.48□□□□□ -0.41
VPS29-211ENST00000553128 CNTRLQ7Z7A1 2325 aa12.47□□□□□ -0.41
VPS29-211ENST00000553128 MGAT4DA6NG13 374 aa12.47□□□□□ -0.41
VPS29-211ENST00000553128 BUD23O43709 281 aaKnown RBP12.47□□□□□ -0.41
VPS29-211ENST00000553128 OR2B3O76000 313 aa12.47□□□□□ -0.41
VPS29-211ENST00000553128 WISP2O76076 250 aa12.47□□□□□ -0.41
VPS29-211ENST00000553128 KLHL18O94889 574 aa12.47□□□□□ -0.41
VPS29-211ENST00000553128 TPM2P07951 284 aa12.47□□□□□ -0.41
VPS29-211ENST00000553128 ITGAXP20702 1163 aa12.47□□□□□ -0.41
VPS29-211ENST00000553128 KIR3DL1P43629 444 aa12.47□□□□□ -0.41
VPS29-211ENST00000553128 GABRA4P48169 554 aa12.47□□□□□ -0.41
VPS29-211ENST00000553128 UBE2HP62256 183 aa12.47□□□□□ -0.41
VPS29-211ENST00000553128 IFI35P80217 286 aaPredicted RBP12.47□□□□□ -0.41
VPS29-211ENST00000553128 ADORA2A-AS1P86434 159 aa12.47□□□□□ -0.41
VPS29-211ENST00000553128 Q0VFX4 171 aa12.47□□□□□ -0.41
VPS29-211ENST00000553128 GSE1Q14687 1217 aa12.47□□□□□ -0.41
VPS29-211ENST00000553128 NKAIN1Q4KMZ8 207 aa12.47□□□□□ -0.41
VPS29-211ENST00000553128 PPP1R2P3Q6NXS1 205 aa12.47□□□□□ -0.41
VPS29-211ENST00000553128 GFRALQ6UXV0 394 aa12.47□□□□□ -0.41
VPS29-211ENST00000553128 GPR135Q8IZ08 494 aa12.47□□□□□ -0.41
VPS29-211ENST00000553128 ZNF655Q8N720 491 aaPredicted RBP12.47□□□□□ -0.41
VPS29-211ENST00000553128 OR1N1Q8NGS0 311 aa12.47□□□□□ -0.41
VPS29-211ENST00000553128 OR2L2Q8NH16 312 aa12.47□□□□□ -0.41
VPS29-211ENST00000553128 LCN9Q8WX39 176 aa12.47□□□□□ -0.41
VPS29-211ENST00000553128 NR4A3Q92570 626 aa12.47□□□□□ -0.41
VPS29-211ENST00000553128 HDAC11Q96DB2 347 aa12.47□□□□□ -0.41
VPS29-211ENST00000553128 AGAP3Q96P47 875 aa12.47□□□□□ -0.41
VPS29-211ENST00000553128 ERGIC2Q96RQ1 377 aa12.47□□□□□ -0.41
VPS29-211ENST00000553128 C17orf62Q9BQA9 187 aa12.47□□□□□ -0.41
VPS29-211ENST00000553128 TRIM56Q9BRZ2 755 aaKnown RBP12.47□□□□□ -0.41
VPS29-211ENST00000553128 SRMSQ9H3Y6 488 aa12.47□□□□□ -0.41
VPS29-211ENST00000553128 XKR8Q9H6D3 395 aa12.47□□□□□ -0.41
VPS29-211ENST00000553128 HAUS2Q9NVX0 235 aa12.47□□□□□ -0.41
VPS29-211ENST00000553128 UBP1Q9NZI7 540 aa12.47□□□□□ -0.41
VPS29-211ENST00000553128 SUCOQ9UBS9 1254 aaKnown RBP12.47□□□□□ -0.41
VPS29-211ENST00000553128 DNMT3AQ9Y6K1 912 aaPredicted RBP12.47□□□□□ -0.41
VPS29-211ENST00000553128 NUP210LQ5VU65 1888 aa12.46□□□□□ -0.41
VPS29-211ENST00000553128 LRRC53A6NM62 1247 aa12.46□□□□□ -0.41
VPS29-211ENST00000553128 KCNN4O15554 427 aa12.46□□□□□ -0.41
VPS29-211ENST00000553128 SGTAO43765 313 aa12.46□□□□□ -0.41
VPS29-211ENST00000553128 SLC35G4P0C7Q5 338 aa12.46□□□□□ -0.41
VPS29-211ENST00000553128 GZMAP12544 262 aa12.46□□□□□ -0.41
VPS29-211ENST00000553128 MMP11P24347 488 aa12.46□□□□□ -0.41
VPS29-211ENST00000553128 SSTR2P30874 369 aa12.46□□□□□ -0.41
VPS29-211ENST00000553128 HMGCLP35914 325 aa12.46□□□□□ -0.41
VPS29-211ENST00000553128 PPIDQ08752 370 aaKnown RBP12.46□□□□□ -0.41
VPS29-211ENST00000553128 PIGHQ14442 188 aaPredicted RBP12.46□□□□□ -0.41
VPS29-211ENST00000553128 KRT33BQ14525 404 aa12.46□□□□□ -0.41
VPS29-211ENST00000553128 PTPRCAPQ14761 206 aa12.46□□□□□ -0.41
VPS29-211ENST00000553128 LDLRAP1Q5SW96 308 aa12.46□□□□□ -0.41
VPS29-211ENST00000553128 FCRL6Q6DN72 434 aa12.46□□□□□ -0.41
VPS29-211ENST00000553128 RPUSD3Q6P087 351 aaKnown RBP12.46□□□□□ -0.41
VPS29-211ENST00000553128 KIRREL2Q6UWL6 708 aa12.46□□□□□ -0.41
VPS29-211ENST00000553128 SHISA6Q6ZSJ9 500 aa12.46□□□□□ -0.41
VPS29-211ENST00000553128 APTXQ7Z2E3 356 aaKnown RBP12.46□□□□□ -0.41
VPS29-211ENST00000553128 ADGRF3Q8IZF5 1079 aa12.46□□□□□ -0.41
VPS29-211ENST00000553128 NIPA2Q8N8Q9 360 aa12.46□□□□□ -0.41
VPS29-211ENST00000553128 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.46□□□□□ -0.41
VPS29-211ENST00000553128 ACVR1CQ8NER5 493 aa12.46□□□□□ -0.41
VPS29-211ENST00000553128 PROKR1Q8TCW9 393 aa12.46□□□□□ -0.41
VPS29-211ENST00000553128 COG1Q8WTW3 980 aa12.46□□□□□ -0.41
VPS29-211ENST00000553128 THOC3Q96J01 351 aaKnown RBP12.46□□□□□ -0.41
VPS29-211ENST00000553128 AP1M1Q9BXS5 423 aa12.46□□□□□ -0.41
VPS29-211ENST00000553128 ZCCHC2Q9C0B9 1178 aaKnown RBP12.46□□□□□ -0.41
VPS29-211ENST00000553128 LHPPQ9H008 270 aa12.46□□□□□ -0.41
VPS29-211ENST00000553128 EPS8L2Q9H6S3 715 aa12.46□□□□□ -0.41
VPS29-211ENST00000553128 CBX8Q9HC52 389 aa12.46□□□□□ -0.41
VPS29-211ENST00000553128 MRPL47Q9HD33 250 aaKnown RBP12.46□□□□□ -0.41
VPS29-211ENST00000553128 LIMA1Q9UHB6 759 aaKnown RBP12.46□□□□□ -0.41
VPS29-211ENST00000553128 CDC23Q9UJX2 597 aa12.46□□□□□ -0.41
VPS29-211ENST00000553128 ACSL5Q9ULC5 683 aa12.46□□□□□ -0.41
VPS29-211ENST00000553128 HS3ST3B1Q9Y662 390 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms