RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 MRPL1Q9BYD6 325 aaKnown RBP3.81□□□□□ -1.8
LIMA1-208ENST00000551691 NUAK2Q9H093 628 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 HRH4Q9H3N8 390 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 ZNF334Q9HCZ1 680 aaPredicted RBP3.81□□□□□ -1.8
LIMA1-208ENST00000551691 BPIFA1Q9NP55 256 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 MRPL17Q9NRX2 175 aaKnown RBP3.81□□□□□ -1.8
LIMA1-208ENST00000551691 SLC6A13Q9NSD5 602 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 TCP11L1Q9NUJ3 509 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 SPATS2LQ9NUQ6 558 aaKnown RBP3.81□□□□□ -1.8
LIMA1-208ENST00000551691 TMEM248Q9NWD8 314 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 ARPP21Q9UBL0 812 aaPredicted RBP3.81□□□□□ -1.8
LIMA1-208ENST00000551691 HSPB7Q9UBY9 170 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 ZNHIT2Q9UHR6 403 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 DDX52Q9Y2R4 599 aaKnown RBP eCLIP3.81□□□□□ -1.8
LIMA1-208ENST00000551691 NF1P21359 2839 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 COL5A1P20908 1838 aaPredicted RBP3.81□□□□□ -1.8
LIMA1-208ENST00000551691 CELSR2Q9HCU4 2923 aa3.81□□□□□ -1.8
LIMA1-208ENST00000551691 EML5Q05BV3 1969 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 ADAMTS9Q9P2N4 1935 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 TCRBV7S3A2A0A539 114 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 ANTXRLA6NF34 631 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 A8MZ25 164 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 H0Y626 953 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 M0QZ92 97 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 CAPN9O14815 690 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 TP73O15350 636 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 TLX3O43711 291 aaPredicted RBP3.8□□□□□ -1.8
LIMA1-208ENST00000551691 RANBP6O60518 1105 aaKnown RBP3.8□□□□□ -1.8
LIMA1-208ENST00000551691 TPPPO94811 219 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 NKX2-2O95096 273 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 TRIM16O95361 564 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 TGDSO95455 350 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 PEX11BO96011 259 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 VTNP04004 478 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 ATP5BP06576 529 aaKnown RBP3.8□□□□□ -1.8
LIMA1-208ENST00000551691 PDHBP11177 359 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 CD59P13987 128 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 IL7RP16871 459 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 CPT2P23786 658 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 GDI1P31150 447 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 PTGER1P34995 402 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 FOLR3P41439 243 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 CCT8P50990 548 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 ARSFP54793 590 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 BLOC1S1P78537 153 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 UBXN1Q04323 297 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 ITGADQ13349 1161 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 GAB1Q13480 694 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 IRF3Q14653 427 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 DRAP1Q14919 205 aaPredicted RBP3.8□□□□□ -1.8
LIMA1-208ENST00000551691 KPNB1Q14974 876 aaKnown RBP3.8□□□□□ -1.8
LIMA1-208ENST00000551691 TRIP6Q15654 476 aaKnown RBP3.8□□□□□ -1.8
LIMA1-208ENST00000551691 TAF1BQ53T94 588 aaPredicted RBP3.8□□□□□ -1.8
LIMA1-208ENST00000551691 IGSF11Q5DX21 431 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 ADALQ6DHV7 355 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 METTL7BQ6UX53 244 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 GLDNQ6ZMI3 551 aaPredicted RBP3.8□□□□□ -1.8
LIMA1-208ENST00000551691 STOX1Q6ZVD7 989 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 MTSS1LQ765P7 747 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 CYB5R4Q7L1T6 521 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 TRMT1LQ7Z2T5 733 aaKnown RBP3.8□□□□□ -1.8
LIMA1-208ENST00000551691 NEK8Q86SG6 692 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 IGFN1Q86VF2 1251 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 LINC00346Q8IVM7 164 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 ZNF713Q8N859 430 aaPredicted RBP3.8□□□□□ -1.8
LIMA1-208ENST00000551691 FAM47BQ8NA70 645 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 GOT1L1Q8NHS2 421 aaPredicted RBP3.8□□□□□ -1.8
LIMA1-208ENST00000551691 ADAMTS14Q8WXS8 1223 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 OTULINQ96BN8 352 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 ARHGEF26Q96DR7 871 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 MYEOVQ96EZ4 313 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 HARBI1Q96MB7 349 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 Q96MF0 132 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 TMEM68Q96MH6 324 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 CCDC43Q96MW1 224 aaKnown RBP3.8□□□□□ -1.8
LIMA1-208ENST00000551691 KIFC3Q9BVG8 833 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 CCDC106Q9BWC9 280 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 GTPBP2Q9BX10 602 aaKnown RBP3.8□□□□□ -1.8
LIMA1-208ENST00000551691 FSD1LQ9BXM9 530 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 PLK3Q9H4B4 646 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 SCPEP1Q9HB40 452 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 XAB2Q9HCS7 855 aaKnown RBP3.8□□□□□ -1.8
LIMA1-208ENST00000551691 RANGRFQ9HD47 186 aaPredicted RBP3.8□□□□□ -1.8
LIMA1-208ENST00000551691 ASAH2Q9NR71 780 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 PAPOLBQ9NRJ5 636 aaKnown RBP3.8□□□□□ -1.8
LIMA1-208ENST00000551691 SLC22A11Q9NSA0 550 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 TBC1D13Q9NVG8 400 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 PAG1Q9NWQ8 432 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 PSD3Q9NYI0 1048 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 FBXL17Q9UF56 701 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 AMACRQ9UHK6 382 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 CARD8Q9Y2G2 431 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 R3HDM2Q9Y2K5 976 aaKnown RBP3.8□□□□□ -1.8
LIMA1-208ENST00000551691 COL6A6A6NMZ7 2263 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 BSNQ9UPA5 3926 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 CRYBG3Q68DQ2 2970 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 PTPRBP23467 1997 aa3.8□□□□□ -1.8
LIMA1-208ENST00000551691 USP9YO00507 2555 aaPredicted RBP3.79□□□□□ -1.8
LIMA1-208ENST00000551691 CCDC171Q6TFL3 1326 aa3.79□□□□□ -1.8
LIMA1-208ENST00000551691 WDR19Q8NEZ3 1342 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms