RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 PIAS2O75928 621 aa15.65■□□□□ 0.1
PRPF40A-212ENST00000545856 HIST1H2AGP0C0S8 130 aaPredicted RBP15.65■□□□□ 0.1
PRPF40A-212ENST00000545856 TPBGLP0DKB5 382 aa15.65■□□□□ 0.1
PRPF40A-212ENST00000545856 TFEBP19484 476 aa15.65■□□□□ 0.1
PRPF40A-212ENST00000545856 HIST1H2ADP20671 130 aa15.65■□□□□ 0.1
PRPF40A-212ENST00000545856 MAP4P27816 1152 aaKnown RBP15.65■□□□□ 0.1
PRPF40A-212ENST00000545856 PBLDP30039 288 aaPredicted RBP15.65■□□□□ 0.1
PRPF40A-212ENST00000545856 HSD17B2P37059 387 aa15.65■□□□□ 0.1
PRPF40A-212ENST00000545856 MPLP40238 635 aa15.65■□□□□ 0.1
PRPF40A-212ENST00000545856 ACTR1BP42025 376 aa15.65■□□□□ 0.1
PRPF40A-212ENST00000545856 HNMTP50135 292 aa15.65■□□□□ 0.1
PRPF40A-212ENST00000545856 ACTR1AP61163 376 aa15.65■□□□□ 0.1
PRPF40A-212ENST00000545856 NFKB2Q00653 900 aa15.65■□□□□ 0.1
PRPF40A-212ENST00000545856 IRF9Q00978 393 aa15.65■□□□□ 0.1
PRPF40A-212ENST00000545856 KIF19Q2TAC6 998 aa15.65■□□□□ 0.1
PRPF40A-212ENST00000545856 PLA2G2CQ5R387 149 aa15.65■□□□□ 0.1
PRPF40A-212ENST00000545856 N4BP2L1Q5TBK1 243 aaPredicted RBP15.65■□□□□ 0.1
PRPF40A-212ENST00000545856 SBSNQ6UWP8 590 aa15.65■□□□□ 0.1
PRPF40A-212ENST00000545856 XKR5Q6UX68 686 aa15.65■□□□□ 0.1
PRPF40A-212ENST00000545856 SLC22A9Q8IVM8 553 aa15.65■□□□□ 0.1
PRPF40A-212ENST00000545856 DCUN1D3Q8IWE4 304 aa15.65■□□□□ 0.1
PRPF40A-212ENST00000545856 TBC1D21Q8IYX1 336 aa15.65■□□□□ 0.1
PRPF40A-212ENST00000545856 MCOLN3Q8TDD5 553 aa15.65■□□□□ 0.1
PRPF40A-212ENST00000545856 TCP10LQ8TDR4 215 aa15.65■□□□□ 0.1
PRPF40A-212ENST00000545856 ATL1Q8WXF7 558 aa15.65■□□□□ 0.1
PRPF40A-212ENST00000545856 NXNL1Q96CM4 212 aa15.65■□□□□ 0.1
PRPF40A-212ENST00000545856 HIST1H2AHQ96KK5 128 aa15.65■□□□□ 0.1
PRPF40A-212ENST00000545856 HIST1H2AJQ99878 128 aa15.65■□□□□ 0.1
PRPF40A-212ENST00000545856 H2AFJQ9BTM1 129 aa15.65■□□□□ 0.1
PRPF40A-212ENST00000545856 RAB11FIP5Q9BXF6 653 aa15.65■□□□□ 0.1
PRPF40A-212ENST00000545856 PARVBQ9HBI1 364 aa15.65■□□□□ 0.1
PRPF40A-212ENST00000545856 OARD1Q9Y530 152 aa15.65■□□□□ 0.1
PRPF40A-212ENST00000545856 PCYT1BQ9Y5K3 369 aaPredicted RBP15.65■□□□□ 0.1
PRPF40A-212ENST00000545856 OTOGLQ3ZCN5 2332 aa15.65■□□□□ 0.1
PRPF40A-212ENST00000545856 A0A1B0GTQ1 180 aa15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 A6NCN8 305 aa15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 ZNF839A8K0R7 811 aa15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 AQP9O43315 295 aa15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 SNUPNO95149 360 aaKnown RBP15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 PROCP04070 461 aa15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 DHRS4L1P0CG22 281 aa15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 ETV4P43268 484 aa15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 DLG1Q12959 904 aa15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 GRIK2Q13002 908 aa15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 ARHGAP19Q14CB8 494 aa15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 PPP1R3AQ16821 1122 aa15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 PLA2G4EQ3MJ16 856 aa15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 TUBB8Q3ZCM7 444 aa15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 PRRT3Q5FWE3 981 aa15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 FAM83HQ6ZRV2 1179 aaPredicted RBP15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 FRA10AC1Q70Z53 315 aa15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 RD3Q7Z3Z2 195 aa15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 PIWIL4Q7Z3Z4 852 aaKnown RBP15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 PLD6Q8N2A8 252 aaKnown RBP15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 RAB42Q8N4Z0 105 aa15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 ZNF548Q8NEK5 533 aaPredicted RBP15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 OR5K2Q8NHB8 316 aa15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 FAM76AQ8TAV0 307 aa15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 RAB3IL1Q8TBN0 382 aa15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 DENND1AQ8TEH3 1009 aa15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 TFGQ92734 400 aaPredicted RBP15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 RAD51AP1Q96B01 352 aa15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 FAM136AQ96C01 138 aa15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 ATOH8Q96SQ7 321 aa15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 DUSP23Q9BVJ7 150 aa15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 TRIT1Q9H3H1 467 aaKnown RBP15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 OSGEPL1Q9H4B0 414 aa15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 STN1Q9H668 368 aaKnown RBP15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 KCNK9Q9NPC2 374 aa15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 TM7SF3Q9NS93 570 aa15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 POT1Q9NUX5 634 aa15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 XPR1Q9UBH6 696 aa15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 GMEB2Q9UKD1 530 aa15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 PNMA8BQ9ULN7 279 aaPredicted RBP15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 KCNK6Q9Y257 313 aa15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 DNAJC16Q9Y2G8 782 aa15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 COLEC10Q9Y6Z7 277 aa15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 ATXN2Q99700 1313 aaKnown RBP15.64■□□□□ 0.09
PRPF40A-212ENST00000545856 PDZK1P1A8MUH7 402 aa15.63■□□□□ 0.09
PRPF40A-212ENST00000545856 TARM1B6A8C7 271 aa15.63■□□□□ 0.09
PRPF40A-212ENST00000545856 H3BQF6 201 aa15.63■□□□□ 0.09
PRPF40A-212ENST00000545856 ARHGAP33O14559 1287 aa15.63■□□□□ 0.09
PRPF40A-212ENST00000545856 KHNYNO15037 678 aaKnown RBP15.63■□□□□ 0.09
PRPF40A-212ENST00000545856 KLK8O60259 260 aa15.63■□□□□ 0.09
PRPF40A-212ENST00000545856 SMIM24O75264 130 aa15.63■□□□□ 0.09
PRPF40A-212ENST00000545856 H2AFYO75367 372 aaKnown RBP15.63■□□□□ 0.09
PRPF40A-212ENST00000545856 IPO13O94829 963 aaKnown RBP15.63■□□□□ 0.09
PRPF40A-212ENST00000545856 EPHA8P29322 1005 aaPredicted RBP15.63■□□□□ 0.09
PRPF40A-212ENST00000545856 RPA3P35244 121 aaPredicted RBP15.63■□□□□ 0.09
PRPF40A-212ENST00000545856 NBL1P41271 181 aa15.63■□□□□ 0.09
PRPF40A-212ENST00000545856 PREPP48147 710 aa15.63■□□□□ 0.09
PRPF40A-212ENST00000545856 CCT8P50990 548 aa15.63■□□□□ 0.09
PRPF40A-212ENST00000545856 TCF15Q12870 199 aa15.63■□□□□ 0.09
PRPF40A-212ENST00000545856 TSNQ15631 228 aaKnown RBP15.63■□□□□ 0.09
PRPF40A-212ENST00000545856 TRIM61Q5EBN2 209 aa15.63■□□□□ 0.09
PRPF40A-212ENST00000545856 CDHR3Q6ZTQ4 885 aa15.63■□□□□ 0.09
PRPF40A-212ENST00000545856 UBE2R2Q712K3 238 aaPredicted RBP15.63■□□□□ 0.09
PRPF40A-212ENST00000545856 TAF8Q7Z7C8 310 aa15.63■□□□□ 0.09
PRPF40A-212ENST00000545856 NRROSQ86YC3 692 aa15.63■□□□□ 0.09
PRPF40A-212ENST00000545856 GPSM1Q86YR5 675 aa15.63■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms