RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 CDK5RAP1Q96SZ6 601 aaKnown RBP16.58■□□□□ 0.24
USP28-208ENST00000540438 MTERF1Q99551 399 aaKnown RBP16.58■□□□□ 0.24
USP28-208ENST00000540438 MYOCQ99972 504 aa16.58■□□□□ 0.24
USP28-208ENST00000540438 INPP5KQ9BT40 448 aa16.58■□□□□ 0.24
USP28-208ENST00000540438 ADI1Q9BV57 179 aa16.58■□□□□ 0.24
USP28-208ENST00000540438 RIC8BQ9NVN3 520 aa16.58■□□□□ 0.24
USP28-208ENST00000540438 LEF1Q9UJU2 399 aaPredicted RBP16.58■□□□□ 0.24
USP28-208ENST00000540438 LEFTY2O00292 366 aa16.57■□□□□ 0.24
USP28-208ENST00000540438 GBAP04062 536 aa16.57■□□□□ 0.24
USP28-208ENST00000540438 C8AP07357 584 aa16.57■□□□□ 0.24
USP28-208ENST00000540438 SRCP12931 536 aa16.57■□□□□ 0.24
USP28-208ENST00000540438 EEF1B2P24534 225 aaKnown RBP16.57■□□□□ 0.24
USP28-208ENST00000540438 POLR2IP36954 125 aaKnown RBP16.57■□□□□ 0.24
USP28-208ENST00000540438 PREPP48147 710 aa16.57■□□□□ 0.24
USP28-208ENST00000540438 ROR2Q01974 943 aaKnown RBP16.57■□□□□ 0.24
USP28-208ENST00000540438 PTSQ03393 145 aa16.57■□□□□ 0.24
USP28-208ENST00000540438 MESP2Q0VG99 397 aa16.57■□□□□ 0.24
USP28-208ENST00000540438 CCSMST1Q4G0I0 132 aa16.57■□□□□ 0.24
USP28-208ENST00000540438 PLPP4Q5VZY2 271 aa16.57■□□□□ 0.24
USP28-208ENST00000540438 SLC39A11Q8N1S5 342 aa16.57■□□□□ 0.24
USP28-208ENST00000540438 FAM192AQ9GZU8 254 aa16.57■□□□□ 0.24
USP28-208ENST00000540438 NAA50Q9GZZ1 169 aaKnown RBP16.57■□□□□ 0.24
USP28-208ENST00000540438 POPDC3Q9HBV1 291 aa16.57■□□□□ 0.24
USP28-208ENST00000540438 CDC14AQ9UNH5 594 aa16.57■□□□□ 0.24
USP28-208ENST00000540438 PITPNM1O00562 1244 aa16.57■□□□□ 0.24
USP28-208ENST00000540438 PER2O15055 1255 aa16.57■□□□□ 0.24
USP28-208ENST00000540438 CLOCKO15516 846 aa16.57■□□□□ 0.24
USP28-208ENST00000540438 LRG1P02750 347 aa16.57■□□□□ 0.24
USP28-208ENST00000540438 CCL5P13501 91 aa16.57■□□□□ 0.24
USP28-208ENST00000540438 ACRV1P26436 265 aa16.57■□□□□ 0.24
USP28-208ENST00000540438 SLC5A2P31639 672 aa16.57■□□□□ 0.24
USP28-208ENST00000540438 TRAP1Q12931 704 aaKnown RBP16.57■□□□□ 0.24
USP28-208ENST00000540438 DLEU7Q6UYE1 221 aa16.57■□□□□ 0.24
USP28-208ENST00000540438 SLC39A5Q6ZMH5 540 aa16.57■□□□□ 0.24
USP28-208ENST00000540438 RBFAQ8N0V3 343 aa16.57■□□□□ 0.24
USP28-208ENST00000540438 CATSPER1Q8NEC5 780 aa16.57■□□□□ 0.24
USP28-208ENST00000540438 ACTR3BQ9P1U1 418 aa16.57■□□□□ 0.24
USP28-208ENST00000540438 BACE2Q9Y5Z0 518 aa16.57■□□□□ 0.24
USP28-208ENST00000540438 WNT6Q9Y6F9 365 aa16.57■□□□□ 0.24
USP28-208ENST00000540438 STX16O14662 325 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 GSTA4O15217 222 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 COL6A1P12109 1028 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 AARS2Q5JTZ9 985 aaKnown RBP16.56■□□□□ 0.24
USP28-208ENST00000540438 RBM23Q86U06 439 aaKnown RBP16.56■□□□□ 0.24
USP28-208ENST00000540438 SLAIN1Q8ND83 568 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 C2orf15Q8WU43 125 aaKnown RBP16.56■□□□□ 0.24
USP28-208ENST00000540438 ASB2Q96Q27 587 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 ABCD2Q9UBJ2 740 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 B4GALT6Q9UBX8 382 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 ANAPC2Q9UJX6 822 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 COQ6Q9Y2Z9 468 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 COL4A6Q14031 1691 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 FKTNO75072 461 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 CXCL14O95715 111 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 PDYNP01213 254 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 ETV3P41162 512 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 GSSP48637 474 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 ADARP55265 1226 aaKnown RBP16.56■□□□□ 0.24
USP28-208ENST00000540438 SNX20Q7Z614 316 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 ITIH5Q86UX2 942 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 APOLD1Q96LR9 279 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 MYRFLQ96LU7 910 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 NSMCE2Q96MF7 247 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 ZNF382Q96SR6 550 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 CGREF1Q99674 301 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 DPY30Q9C005 99 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 ATP13A3Q9H7F0 1226 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 MAGEE1Q9HCI5 957 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 AGPAT4Q9NRZ5 378 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 EBF1Q9UH73 591 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 INVSQ9Y283 1065 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 PLXNA4Q9HCM2 1894 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 ANAPC1Q9H1A4 1944 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 WDR47O94967 919 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 CDKN2CP42773 168 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 RGS4P49798 205 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 PHC1P78364 1004 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 IRX1P78414 480 aaPredicted RBP16.56■□□□□ 0.24
USP28-208ENST00000540438 SMARCB1Q12824 385 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 UBE2R2Q712K3 238 aaPredicted RBP16.56■□□□□ 0.24
USP28-208ENST00000540438 ADAMTSL2Q86TH1 951 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 CLVS1Q8IUQ0 354 aaPredicted RBP16.56■□□□□ 0.24
USP28-208ENST00000540438 DCAF4L2Q8NA75 395 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 OR2AP1Q8NGE2 309 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 PEX13Q92968 403 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 RHBDF1Q96CC6 855 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 MED8Q96G25 268 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 SLC2A11Q9BYW1 496 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 LSM7Q9UK45 103 aaKnown RBP16.56■□□□□ 0.24
USP28-208ENST00000540438 MYRFQ9Y2G1 1151 aa16.56■□□□□ 0.24
USP28-208ENST00000540438 MATN4O95460 622 aa16.55■□□□□ 0.24
USP28-208ENST00000540438 H6PDO95479 791 aa16.55■□□□□ 0.24
USP28-208ENST00000540438 LAMA1P25391 3075 aa16.55■□□□□ 0.24
USP28-208ENST00000540438 MERTKQ12866 999 aa16.55■□□□□ 0.24
USP28-208ENST00000540438 MAPKAPK3Q16644 382 aa16.55■□□□□ 0.24
USP28-208ENST00000540438 CARM1Q86X55 608 aa16.55■□□□□ 0.24
USP28-208ENST00000540438 ZFAND4Q86XD8 727 aa16.55■□□□□ 0.24
USP28-208ENST00000540438 NXPE1Q8N323 547 aa16.55■□□□□ 0.24
USP28-208ENST00000540438 TRPV3Q8NET8 790 aa16.55■□□□□ 0.24
USP28-208ENST00000540438 SELENOMQ8WWX9 145 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms