RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 PTPRHQ9HD43 1115 aa9.33□□□□□ -0.92
CTNNA1-243ENST00000540387 ERVK13-1Q9NX77 482 aa9.33□□□□□ -0.92
CTNNA1-243ENST00000540387 TMCC3Q9ULS5 477 aa9.33□□□□□ -0.92
CTNNA1-243ENST00000540387 NOD1Q9Y239 953 aa9.33□□□□□ -0.92
CTNNA1-243ENST00000540387 MRPS7Q9Y2R9 242 aaKnown RBP9.33□□□□□ -0.92
CTNNA1-243ENST00000540387 FIS1Q9Y3D6 152 aa9.33□□□□□ -0.92
CTNNA1-243ENST00000540387 HSPB11Q9Y547 144 aa9.33□□□□□ -0.92
CTNNA1-243ENST00000540387 A0A1W2PRG6 482 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 PGLSO95336 258 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 ERVK-10P10266 1014 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 SOX11P35716 441 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 HMGCLP35914 325 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 THPOP40225 353 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 RAP1GAPP47736 663 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 CENPAP49450 140 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 CAPRIN1Q14444 709 aaKnown RBP9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 IRF3Q14653 427 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 UGP2Q16851 508 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 AAK1Q2M2I8 961 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 PPP1R26Q5T8A7 1209 aaPredicted RBP9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 KIF18BQ86Y91 864 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 GPD1LQ8N335 351 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 CARNMT1Q8N4J0 409 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 OR8H1Q8NGG4 311 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 OR52H1Q8NGJ2 320 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 CDC26Q8NHZ8 85 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 AKAP1Q92667 903 aaKnown RBP eCLIP9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 TMBIM1Q969X1 311 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 TRIM8Q9BZR9 551 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 SLC6A17Q9H1V8 727 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 MMP28Q9H239 520 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 NIPAL2Q9H841 368 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 MAP10Q9P2G4 905 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 RAPGEFL1Q9UHV5 662 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 KLHL20Q9Y2M5 609 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 PCDHGB2Q9Y5G2 931 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 CLDN24A6NM45 220 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 LOC110117498-PIK3R3F6TDL0 507 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 ARVCFO00192 962 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 ANGPT2O15123 496 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 NCAM2O15394 837 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 YKT6O15498 198 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 PTP4A3O75365 173 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 UGT2B17O75795 530 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 SLC22A5O76082 557 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 DNTTP04053 509 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 CCNYL3P0C7X3 344 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 HOXA11P31270 313 aaPredicted RBP9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 MNX1P50219 401 aaPredicted RBP9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 CRYBB1P53674 252 aaPredicted RBP9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 UGT2B15P54855 530 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 BTN1A1Q13410 526 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 FAM209BQ5JX69 171 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 SPANXN2Q5MJ10 180 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 LIPIQ6XZB0 460 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 CFAP77Q6ZQR2 320 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 AMER2Q8N7J2 671 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 CNIH3Q8TBE1 160 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 SETD6Q8TBK2 473 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 ZNF606Q8WXB4 792 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 ARMC5Q96C12 935 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 SCYL1Q96KG9 808 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 RNF145Q96MT1 663 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 HOPXQ9BPY8 73 aaPredicted RBP9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 FEM1AQ9BSK4 669 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 GHITMQ9H3K2 345 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 SMURF2Q9HAU4 748 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 CYP3A43Q9HB55 503 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 MID2Q9UJV3 735 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 TNFSF13BQ9Y275 285 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 SNX8Q9Y5X2 465 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 HSPE1-MOB4S4R3N1 261 aa9.32□□□□□ -0.92
CTNNA1-243ENST00000540387 PNMA8CA0A1B0GUJ8 204 aa9.31□□□□□ -0.92
CTNNA1-243ENST00000540387 FADS2O95864 444 aaKnown RBP9.31□□□□□ -0.92
CTNNA1-243ENST00000540387 C1QBP02746 253 aa9.31□□□□□ -0.92
CTNNA1-243ENST00000540387 SBK3P0C264 359 aa9.31□□□□□ -0.92
CTNNA1-243ENST00000540387 TPSB2P20231 275 aa9.31□□□□□ -0.92
CTNNA1-243ENST00000540387 TNFSF9P41273 254 aa9.31□□□□□ -0.92
CTNNA1-243ENST00000540387 BLVRAP53004 296 aa9.31□□□□□ -0.92
CTNNA1-243ENST00000540387 WNT7BP56706 349 aa9.31□□□□□ -0.92
CTNNA1-243ENST00000540387 OSTNP61366 133 aa9.31□□□□□ -0.92
CTNNA1-243ENST00000540387 ERVK-21P61565 698 aa9.31□□□□□ -0.92
CTNNA1-243ENST00000540387 S100A12P80511 92 aa9.31□□□□□ -0.92
CTNNA1-243ENST00000540387 MRPS6P82932 125 aaKnown RBP9.31□□□□□ -0.92
CTNNA1-243ENST00000540387 PTPN11Q06124 597 aaPredicted RBP9.31□□□□□ -0.92
CTNNA1-243ENST00000540387 KCNAB2Q13303 367 aa9.31□□□□□ -0.92
CTNNA1-243ENST00000540387 TFDP2Q14188 446 aa9.31□□□□□ -0.92
CTNNA1-243ENST00000540387 TPSAB1Q15661 275 aa9.31□□□□□ -0.92
CTNNA1-243ENST00000540387 SETMARQ53H47 684 aaPredicted RBP9.31□□□□□ -0.92
CTNNA1-243ENST00000540387 WDR44Q5JSH3 913 aa9.31□□□□□ -0.92
CTNNA1-243ENST00000540387 ARMC4Q5T2S8 1044 aa9.31□□□□□ -0.92
CTNNA1-243ENST00000540387 HDDC2Q7Z4H3 204 aa9.31□□□□□ -0.92
CTNNA1-243ENST00000540387 IFNEQ86WN2 208 aa9.31□□□□□ -0.92
CTNNA1-243ENST00000540387 FUNDC1Q8IVP5 155 aa9.31□□□□□ -0.92
CTNNA1-243ENST00000540387 EMC1Q8N766 993 aa9.31□□□□□ -0.92
CTNNA1-243ENST00000540387 JOSD2Q8TAC2 188 aa9.31□□□□□ -0.92
CTNNA1-243ENST00000540387 B3GALT6Q96L58 329 aa9.31□□□□□ -0.92
CTNNA1-243ENST00000540387 MFSD14AQ96MC6 490 aa9.31□□□□□ -0.92
CTNNA1-243ENST00000540387 UROC1Q96N76 676 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms