RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 SNAP29O95721 258 aa12.91□□□□□ -0.34
LDLR-203ENST00000535915 EPHB3P54753 998 aa12.91□□□□□ -0.34
LDLR-203ENST00000535915 CHRNA6Q15825 494 aa12.91□□□□□ -0.34
LDLR-203ENST00000535915 CYBRD1Q53TN4 286 aa12.91□□□□□ -0.34
LDLR-203ENST00000535915 SGO1Q5FBB7 561 aa12.91□□□□□ -0.34
LDLR-203ENST00000535915 OTUD3Q5T2D3 398 aaPredicted RBP12.91□□□□□ -0.34
LDLR-203ENST00000535915 SULT1C3Q6IMI6 304 aa12.91□□□□□ -0.34
LDLR-203ENST00000535915 ABRAXAS1Q6UWZ7 409 aa12.91□□□□□ -0.34
LDLR-203ENST00000535915 GPR141Q7Z602 305 aa12.91□□□□□ -0.34
LDLR-203ENST00000535915 ITFG1Q8TB96 612 aa12.91□□□□□ -0.34
LDLR-203ENST00000535915 SOX17Q9H6I2 414 aaPredicted RBP12.91□□□□□ -0.34
LDLR-203ENST00000535915 ZFP14Q9HCL3 533 aa12.91□□□□□ -0.34
LDLR-203ENST00000535915 ZNF334Q9HCZ1 680 aaPredicted RBP12.91□□□□□ -0.34
LDLR-203ENST00000535915 CCL27Q9Y4X3 112 aa12.91□□□□□ -0.34
LDLR-203ENST00000535915 GREM1O60565 184 aa12.91□□□□□ -0.34
LDLR-203ENST00000535915 ULK1O75385 1050 aa12.91□□□□□ -0.34
LDLR-203ENST00000535915 ANXA6P08133 673 aa12.91□□□□□ -0.34
LDLR-203ENST00000535915 HMGCS1Q01581 520 aa12.91□□□□□ -0.34
LDLR-203ENST00000535915 SEMG2Q02383 582 aa12.91□□□□□ -0.34
LDLR-203ENST00000535915 IMPG1Q17R60 797 aa12.91□□□□□ -0.34
LDLR-203ENST00000535915 LYPLAL1Q5VWZ2 237 aa12.91□□□□□ -0.34
LDLR-203ENST00000535915 TMEM214Q6NUQ4 689 aaKnown RBP12.91□□□□□ -0.34
LDLR-203ENST00000535915 TBPL2Q6SJ96 375 aa12.91□□□□□ -0.34
LDLR-203ENST00000535915 CHCHD4Q8N4Q1 142 aa12.91□□□□□ -0.34
LDLR-203ENST00000535915 BPIFB1Q8TDL5 484 aa12.91□□□□□ -0.34
LDLR-203ENST00000535915 SLC13A3Q8WWT9 602 aa12.91□□□□□ -0.34
LDLR-203ENST00000535915 RHBDF1Q96CC6 855 aa12.91□□□□□ -0.34
LDLR-203ENST00000535915 LIN28AQ9H9Z2 209 aaKnown RBP12.91□□□□□ -0.34
LDLR-203ENST00000535915 VAPAQ9P0L0 249 aa12.91□□□□□ -0.34
LDLR-203ENST00000535915 ZNF490Q9ULM2 529 aaPredicted RBP12.91□□□□□ -0.34
LDLR-203ENST00000535915 MYOFQ9NZM1 2061 aa12.9□□□□□ -0.34
LDLR-203ENST00000535915 TRBV5-4A0A0C4DH59 114 aa12.9□□□□□ -0.34
LDLR-203ENST00000535915 K7EPI3 171 aa12.9□□□□□ -0.34
LDLR-203ENST00000535915 DFNA5O60443 496 aa12.9□□□□□ -0.34
LDLR-203ENST00000535915 TULP3O75386 442 aa12.9□□□□□ -0.34
LDLR-203ENST00000535915 PCNAP12004 261 aa12.9□□□□□ -0.34
LDLR-203ENST00000535915 AKT1P31749 480 aa12.9□□□□□ -0.34
LDLR-203ENST00000535915 SPAM1P38567 509 aa12.9□□□□□ -0.34
LDLR-203ENST00000535915 MAD2L1Q13257 205 aaPredicted RBP12.9□□□□□ -0.34
LDLR-203ENST00000535915 FAM174BQ3ZCQ3 159 aa12.9□□□□□ -0.34
LDLR-203ENST00000535915 GPRC6AQ5T6X5 926 aa12.9□□□□□ -0.34
LDLR-203ENST00000535915 Q6ZNB5 142 aa12.9□□□□□ -0.34
LDLR-203ENST00000535915 PATL1Q86TB9 770 aaKnown RBP12.9□□□□□ -0.34
LDLR-203ENST00000535915 RIMKLAQ8IXN7 391 aa12.9□□□□□ -0.34
LDLR-203ENST00000535915 OR8J3Q8NGG0 315 aa12.9□□□□□ -0.34
LDLR-203ENST00000535915 AUTS2Q8WXX7 1259 aa12.9□□□□□ -0.34
LDLR-203ENST00000535915 LZICQ8WZA0 190 aa12.9□□□□□ -0.34
LDLR-203ENST00000535915 ULK4Q96C45 1275 aa12.9□□□□□ -0.34
LDLR-203ENST00000535915 TMEM169Q96HH4 297 aa12.9□□□□□ -0.34
LDLR-203ENST00000535915 HTATIP2Q9BUP3 242 aa12.9□□□□□ -0.34
LDLR-203ENST00000535915 SEZ6LQ9BYH1 1024 aa12.9□□□□□ -0.34
LDLR-203ENST00000535915 DPY30Q9C005 99 aa12.9□□□□□ -0.34
LDLR-203ENST00000535915 HIPK3Q9H422 1215 aa12.9□□□□□ -0.34
LDLR-203ENST00000535915 ATP13A3Q9H7F0 1226 aa12.9□□□□□ -0.34
LDLR-203ENST00000535915 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.9□□□□□ -0.34
LDLR-203ENST00000535915 SLC28A1O00337 649 aa12.9□□□□□ -0.34
LDLR-203ENST00000535915 SEC22BO75396 215 aa12.9□□□□□ -0.34
LDLR-203ENST00000535915 MYCP01106 439 aaPredicted RBP12.9□□□□□ -0.34
LDLR-203ENST00000535915 EPB42P16452 691 aa12.9□□□□□ -0.34
LDLR-203ENST00000535915 GGT1P19440 569 aa12.9□□□□□ -0.34
LDLR-203ENST00000535915 ARHGEF7Q14155 803 aa12.9□□□□□ -0.34
LDLR-203ENST00000535915 KIAA0040Q15053 153 aa12.9□□□□□ -0.34
LDLR-203ENST00000535915 MAPKAPK3Q16644 382 aa12.9□□□□□ -0.34
LDLR-203ENST00000535915 CDKN3Q16667 212 aa12.9□□□□□ -0.34
LDLR-203ENST00000535915 FAM98BQ52LJ0 330 aaKnown RBP12.9□□□□□ -0.34
LDLR-203ENST00000535915 MBOAT1Q6ZNC8 495 aa12.9□□□□□ -0.34
LDLR-203ENST00000535915 TSPAN33Q86UF1 283 aa12.9□□□□□ -0.34
LDLR-203ENST00000535915 CLVS1Q8IUQ0 354 aaPredicted RBP12.9□□□□□ -0.34
LDLR-203ENST00000535915 ERI1Q8IV48 349 aaKnown RBP12.9□□□□□ -0.34
LDLR-203ENST00000535915 LIX1Q8N485 282 aa12.9□□□□□ -0.34
LDLR-203ENST00000535915 FIG4Q92562 907 aa12.9□□□□□ -0.34
LDLR-203ENST00000535915 ACDQ96AP0 544 aa12.9□□□□□ -0.34
LDLR-203ENST00000535915 THUMPD3Q9BV44 507 aaKnown RBP12.9□□□□□ -0.34
LDLR-203ENST00000535915 TIMMDC1Q9NPL8 285 aa12.9□□□□□ -0.34
LDLR-203ENST00000535915 ZNF639Q9UID6 485 aa12.9□□□□□ -0.34
LDLR-203ENST00000535915 LSM7Q9UK45 103 aaKnown RBP12.9□□□□□ -0.34
LDLR-203ENST00000535915 INSL5Q9Y5Q6 135 aa12.9□□□□□ -0.34
LDLR-203ENST00000535915 LOC730098B7Z3J9 87 aa12.89□□□□□ -0.35
LDLR-203ENST00000535915 GFRA2O00451 464 aa12.89□□□□□ -0.35
LDLR-203ENST00000535915 GSTA4O15217 222 aa12.89□□□□□ -0.35
LDLR-203ENST00000535915 SOCS5O75159 536 aa12.89□□□□□ -0.35
LDLR-203ENST00000535915 DEAF1O75398 565 aaPredicted RBP12.89□□□□□ -0.35
LDLR-203ENST00000535915 IGSF6O95976 241 aa12.89□□□□□ -0.35
LDLR-203ENST00000535915 RAP2AP10114 183 aa12.89□□□□□ -0.35
LDLR-203ENST00000535915 GNPDA1P46926 289 aa12.89□□□□□ -0.35
LDLR-203ENST00000535915 CHRNB3Q05901 458 aa12.89□□□□□ -0.35
LDLR-203ENST00000535915 PLCL1Q15111 1095 aa12.89□□□□□ -0.35
LDLR-203ENST00000535915 TTLL9Q3SXZ7 439 aa12.89□□□□□ -0.35
LDLR-203ENST00000535915 CACHD1Q5VU97 1274 aa12.89□□□□□ -0.35
LDLR-203ENST00000535915 GRAMD4Q6IC98 578 aa12.89□□□□□ -0.35
LDLR-203ENST00000535915 MACC1Q6ZN28 852 aa12.89□□□□□ -0.35
LDLR-203ENST00000535915 TPGS1Q6ZTW0 290 aa12.89□□□□□ -0.35
LDLR-203ENST00000535915 ADGRG2Q8IZP9 1017 aa12.89□□□□□ -0.35
LDLR-203ENST00000535915 NXPE1Q8N323 547 aa12.89□□□□□ -0.35
LDLR-203ENST00000535915 OR2T12Q8NG77 320 aa12.89□□□□□ -0.35
LDLR-203ENST00000535915 ABTB1Q969K4 478 aaPredicted RBP12.89□□□□□ -0.35
LDLR-203ENST00000535915 MTFMTQ96DP5 389 aaKnown RBP12.89□□□□□ -0.35
LDLR-203ENST00000535915 ZNF583Q96ND8 569 aa12.89□□□□□ -0.35
LDLR-203ENST00000535915 CLEC4EQ9ULY5 219 aa12.89□□□□□ -0.35
LDLR-203ENST00000535915 NEUROG3Q9Y4Z2 214 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms