RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 LMAN1P49257 510 aa22.87■■□□□ 1.25
CPSF1-202ENST00000527827 MSLNQ13421 630 aaPredicted RBP22.87■■□□□ 1.25
CPSF1-202ENST00000527827 OLIG2Q13516 323 aa22.87■■□□□ 1.25
CPSF1-202ENST00000527827 NCF4Q15080 339 aa22.87■■□□□ 1.25
CPSF1-202ENST00000527827 RANBP10Q6VN20 620 aa22.87■■□□□ 1.25
CPSF1-202ENST00000527827 FERD3LQ96RJ6 166 aa22.87■■□□□ 1.25
CPSF1-202ENST00000527827 SMAD5Q99717 465 aaKnown RBP22.87■■□□□ 1.25
CPSF1-202ENST00000527827 APOL2Q9BQE5 337 aa22.87■■□□□ 1.25
CPSF1-202ENST00000527827 GOLPH3Q9H4A6 298 aa22.87■■□□□ 1.25
CPSF1-202ENST00000527827 GPR83Q9NYM4 423 aa22.87■■□□□ 1.25
CPSF1-202ENST00000527827 INTUQ9ULD6 942 aa22.87■■□□□ 1.25
CPSF1-202ENST00000527827 G3BP2Q9UN86 482 aaKnown RBP22.87■■□□□ 1.25
CPSF1-202ENST00000527827 ALG6Q9Y672 507 aa22.87■■□□□ 1.25
CPSF1-202ENST00000527827 DOPEY1Q5JWR5 2465 aa22.87■■□□□ 1.25
CPSF1-202ENST00000527827 A1L4Q6 167 aa22.86■■□□□ 1.25
CPSF1-202ENST00000527827 C5orf60A6NFR6 353 aa22.86■■□□□ 1.25
CPSF1-202ENST00000527827 RBL1P28749 1068 aa22.86■■□□□ 1.25
CPSF1-202ENST00000527827 ADRA1AP35348 466 aa22.86■■□□□ 1.25
CPSF1-202ENST00000527827 GEMP55040 296 aa22.86■■□□□ 1.25
CPSF1-202ENST00000527827 ZNF658BQ4V348 819 aaPredicted RBP22.86■■□□□ 1.25
CPSF1-202ENST00000527827 ZNF385CQ66K41 422 aaPredicted RBP22.86■■□□□ 1.25
CPSF1-202ENST00000527827 OR13C4Q8NGS5 318 aa22.86■■□□□ 1.25
CPSF1-202ENST00000527827 DCUN1D1Q96GG9 259 aa22.86■■□□□ 1.25
CPSF1-202ENST00000527827 TRAPPC9Q96Q05 1148 aa22.86■■□□□ 1.25
CPSF1-202ENST00000527827 OR52A5Q9H2C5 316 aa22.86■■□□□ 1.25
CPSF1-202ENST00000527827 CRLS1Q9UJA2 301 aa22.86■■□□□ 1.25
CPSF1-202ENST00000527827 SERTAD3Q9UJW9 196 aa22.86■■□□□ 1.25
CPSF1-202ENST00000527827 C17orf113A0A1B0GUU1 675 aa22.85■■□□□ 1.25
CPSF1-202ENST00000527827 CCDC66A2RUB6 948 aa22.85■■□□□ 1.25
CPSF1-202ENST00000527827 ANXA9O76027 345 aa22.85■■□□□ 1.25
CPSF1-202ENST00000527827 ZRANB2O95218 330 aaKnown RBP eCLIP22.85■■□□□ 1.25
CPSF1-202ENST00000527827 PVRP15151 417 aa22.85■■□□□ 1.25
CPSF1-202ENST00000527827 MARCKSL1P49006 195 aa22.85■■□□□ 1.25
CPSF1-202ENST00000527827 RRADP55042 308 aa22.85■■□□□ 1.25
CPSF1-202ENST00000527827 KATNAL2Q8IYT4 538 aa22.85■■□□□ 1.25
CPSF1-202ENST00000527827 RCOR2Q8IZ40 523 aa22.85■■□□□ 1.25
CPSF1-202ENST00000527827 NXPE1Q8N323 547 aa22.85■■□□□ 1.25
CPSF1-202ENST00000527827 OR52E1Q8NGJ3 308 aa22.85■■□□□ 1.25
CPSF1-202ENST00000527827 C19orf60Q96EN9 201 aa22.85■■□□□ 1.25
CPSF1-202ENST00000527827 ANP32EQ9BTT0 268 aa22.85■■□□□ 1.25
CPSF1-202ENST00000527827 SLC29A3Q9BZD2 475 aa22.85■■□□□ 1.25
CPSF1-202ENST00000527827 KLHL25Q9H0H3 589 aa22.85■■□□□ 1.25
CPSF1-202ENST00000527827 TFB2MQ9H5Q4 396 aaKnown RBP22.85■■□□□ 1.25
CPSF1-202ENST00000527827 FAM96AQ9H5X1 160 aa22.85■■□□□ 1.25
CPSF1-202ENST00000527827 COG4Q9H9E3 785 aa22.85■■□□□ 1.25
CPSF1-202ENST00000527827 CENPEQ02224 2701 aa22.85■■□□□ 1.25
CPSF1-202ENST00000527827 ZNF749O43361 778 aa22.84■■□□□ 1.25
CPSF1-202ENST00000527827 MFAP3LO75121 409 aa22.84■■□□□ 1.25
CPSF1-202ENST00000527827 DDAH2O95865 285 aa22.84■■□□□ 1.25
CPSF1-202ENST00000527827 RALBP11234 206 aa22.84■■□□□ 1.25
CPSF1-202ENST00000527827 ATP1B2P14415 290 aaPredicted RBP22.84■■□□□ 1.25
CPSF1-202ENST00000527827 VARSP26640 1264 aaKnown RBP22.84■■□□□ 1.25
CPSF1-202ENST00000527827 RAPSNQ13702 412 aa22.84■■□□□ 1.25
CPSF1-202ENST00000527827 CDHR3Q6ZTQ4 885 aa22.84■■□□□ 1.25
CPSF1-202ENST00000527827 BBS12Q6ZW61 710 aa22.84■■□□□ 1.25
CPSF1-202ENST00000527827 PHC3Q8NDX5 983 aa22.84■■□□□ 1.25
CPSF1-202ENST00000527827 PRR7Q8TB68 274 aa22.84■■□□□ 1.25
CPSF1-202ENST00000527827 ULK4Q96C45 1275 aa22.84■■□□□ 1.25
CPSF1-202ENST00000527827 RBM41Q96IZ5 413 aaKnown RBP22.84■■□□□ 1.25
CPSF1-202ENST00000527827 COPS8Q99627 209 aa22.84■■□□□ 1.25
CPSF1-202ENST00000527827 DPH2Q9BQC3 489 aaPredicted RBP22.84■■□□□ 1.25
CPSF1-202ENST00000527827 MAP10Q9P2G4 905 aa22.84■■□□□ 1.25
CPSF1-202ENST00000527827 E7EQ34 232 aa22.83■■□□□ 1.25
CPSF1-202ENST00000527827 KRT86O43790 486 aa22.83■■□□□ 1.25
CPSF1-202ENST00000527827 KLF7O75840 302 aaPredicted RBP22.83■■□□□ 1.25
CPSF1-202ENST00000527827 PDHA2P29803 388 aa22.83■■□□□ 1.25
CPSF1-202ENST00000527827 ZNF140P52738 457 aaPredicted RBP22.83■■□□□ 1.25
CPSF1-202ENST00000527827 HADHBP55084 474 aaKnown RBP22.83■■□□□ 1.25
CPSF1-202ENST00000527827 TMPRSS15P98073 1019 aa22.83■■□□□ 1.25
CPSF1-202ENST00000527827 MICALCLQ6ZW33 695 aa22.83■■□□□ 1.25
CPSF1-202ENST00000527827 RAB43Q86YS6 212 aa22.83■■□□□ 1.25
CPSF1-202ENST00000527827 CCDC50Q8IVM0 306 aa22.83■■□□□ 1.25
CPSF1-202ENST00000527827 VSTM4Q8IW00 320 aa22.83■■□□□ 1.25
CPSF1-202ENST00000527827 ADGRF3Q8IZF5 1079 aa22.83■■□□□ 1.25
CPSF1-202ENST00000527827 SGSM3Q96HU1 749 aa22.83■■□□□ 1.25
CPSF1-202ENST00000527827 XKR8Q9H6D3 395 aa22.83■■□□□ 1.25
CPSF1-202ENST00000527827 C5AR2Q9P296 337 aa22.83■■□□□ 1.25
CPSF1-202ENST00000527827 IGLV3-16A0A075B6K0 115 aa22.82■■□□□ 1.24
CPSF1-202ENST00000527827 C9J4A7 227 aa22.82■■□□□ 1.24
CPSF1-202ENST00000527827 H7C0C1 242 aa22.82■■□□□ 1.24
CPSF1-202ENST00000527827 APOC4-APOC2K7ER74 178 aa22.82■■□□□ 1.24
CPSF1-202ENST00000527827 CRTAMO95727 393 aa22.82■■□□□ 1.24
CPSF1-202ENST00000527827 APOC2P02655 101 aa22.82■■□□□ 1.24
CPSF1-202ENST00000527827 PSMB4P28070 264 aa22.82■■□□□ 1.24
CPSF1-202ENST00000527827 ATP5OP48047 213 aa22.82■■□□□ 1.24
CPSF1-202ENST00000527827 CD151P48509 253 aa22.82■■□□□ 1.24
CPSF1-202ENST00000527827 CDKN1CP49918 316 aaPredicted RBP22.82■■□□□ 1.24
CPSF1-202ENST00000527827 PLEKHN1Q494U1 663 aaPredicted RBP22.82■■□□□ 1.24
CPSF1-202ENST00000527827 ITPRIPL1Q6GPH6 555 aa22.82■■□□□ 1.24
CPSF1-202ENST00000527827 SNX20Q7Z614 316 aa22.82■■□□□ 1.24
CPSF1-202ENST00000527827 MRGPREQ86SM8 312 aa22.82■■□□□ 1.24
CPSF1-202ENST00000527827 AMIGO1Q86WK6 493 aa22.82■■□□□ 1.24
CPSF1-202ENST00000527827 HEXDCQ8WVB3 486 aa22.82■■□□□ 1.24
CPSF1-202ENST00000527827 SNRNP40Q96DI7 357 aaKnown RBP22.82■■□□□ 1.24
CPSF1-202ENST00000527827 DHRS4Q9BTZ2 278 aa22.82■■□□□ 1.24
CPSF1-202ENST00000527827 HEMGNQ9BXL5 484 aa22.82■■□□□ 1.24
CPSF1-202ENST00000527827 SLC7A5P2Q9GIP4 190 aa22.82■■□□□ 1.24
CPSF1-202ENST00000527827 MVB12BQ9H7P6 319 aa22.82■■□□□ 1.24
CPSF1-202ENST00000527827 CREBBPQ92793 2442 aa22.82■■□□□ 1.24
CPSF1-202ENST00000527827 ANKRD12Q6UB98 2062 aa22.81■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms