RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 ADAMTS19Q8TE59 1207 aa20.83■□□□□ 0.93
VPS28-205ENST00000526204 GTF2H4Q92759 462 aa20.83■□□□□ 0.93
VPS28-205ENST00000526204 SLC22A12Q96S37 553 aa20.83■□□□□ 0.93
VPS28-205ENST00000526204 DPY30Q9C005 99 aa20.83■□□□□ 0.93
VPS28-205ENST00000526204 NTN4Q9HB63 628 aa20.83■□□□□ 0.93
VPS28-205ENST00000526204 SMAD6O43541 496 aaKnown RBP20.83■□□□□ 0.92
VPS28-205ENST00000526204 ARHGEF15O94989 841 aa20.83■□□□□ 0.92
VPS28-205ENST00000526204 CLIC3O95833 236 aa20.83■□□□□ 0.92
VPS28-205ENST00000526204 CXCL10P02778 98 aa20.83■□□□□ 0.92
VPS28-205ENST00000526204 CBSLP0DN79 551 aa20.83■□□□□ 0.92
VPS28-205ENST00000526204 UGT1A1P22309 533 aa20.83■□□□□ 0.92
VPS28-205ENST00000526204 UGT1A4P22310 534 aa20.83■□□□□ 0.92
VPS28-205ENST00000526204 CA5AP35218 305 aa20.83■□□□□ 0.92
VPS28-205ENST00000526204 UGT1A3P35503 534 aa20.83■□□□□ 0.92
VPS28-205ENST00000526204 UGT1A5P35504 534 aa20.83■□□□□ 0.92
VPS28-205ENST00000526204 CBSP35520 551 aa20.83■□□□□ 0.92
VPS28-205ENST00000526204 ALDH3A2P51648 485 aa20.83■□□□□ 0.92
VPS28-205ENST00000526204 NUP107P57740 925 aa20.83■□□□□ 0.92
VPS28-205ENST00000526204 IMPG1Q17R60 797 aa20.83■□□□□ 0.92
VPS28-205ENST00000526204 CCNYL2Q5T2Q4 361 aa20.83■□□□□ 0.92
VPS28-205ENST00000526204 NXPE1Q8N323 547 aa20.83■□□□□ 0.92
VPS28-205ENST00000526204 PNPT1Q8TCS8 783 aaKnown RBP20.83■□□□□ 0.92
VPS28-205ENST00000526204 SLC29A3Q9BZD2 475 aa20.83■□□□□ 0.92
VPS28-205ENST00000526204 VAPAQ9P0L0 249 aa20.83■□□□□ 0.92
VPS28-205ENST00000526204 KLHL42Q9P2K6 505 aa20.83■□□□□ 0.92
VPS28-205ENST00000526204 KLQ9UEF7 1012 aa20.83■□□□□ 0.92
VPS28-205ENST00000526204 ZNF490Q9ULM2 529 aaPredicted RBP20.83■□□□□ 0.92
VPS28-205ENST00000526204 NEUROG3Q9Y4Z2 214 aa20.83■□□□□ 0.92
VPS28-205ENST00000526204 PCDHGA11Q9Y5H2 935 aa20.83■□□□□ 0.92
VPS28-205ENST00000526204 GSTA4O15217 222 aa20.82■□□□□ 0.92
VPS28-205ENST00000526204 NFKBIAP25963 317 aa20.82■□□□□ 0.92
VPS28-205ENST00000526204 GDF5P43026 501 aa20.82■□□□□ 0.92
VPS28-205ENST00000526204 ARSFP54793 590 aa20.82■□□□□ 0.92
VPS28-205ENST00000526204 RAB33AQ14088 237 aa20.82■□□□□ 0.92
VPS28-205ENST00000526204 CHRNA6Q15825 494 aa20.82■□□□□ 0.92
VPS28-205ENST00000526204 LRRC23Q53EV4 343 aaPredicted RBP20.82■□□□□ 0.92
VPS28-205ENST00000526204 PYCR3Q53H96 274 aa20.82■□□□□ 0.92
VPS28-205ENST00000526204 CDKL4Q5MAI5 379 aa20.82■□□□□ 0.92
VPS28-205ENST00000526204 OFCC1Q8IZS5 231 aa20.82■□□□□ 0.92
VPS28-205ENST00000526204 ARL14EPQ8N8R7 260 aaPredicted RBP20.82■□□□□ 0.92
VPS28-205ENST00000526204 DNAJB8Q8NHS0 232 aa20.82■□□□□ 0.92
VPS28-205ENST00000526204 ULK4Q96C45 1275 aa20.82■□□□□ 0.92
VPS28-205ENST00000526204 THUMPD3Q9BV44 507 aaKnown RBP20.82■□□□□ 0.92
VPS28-205ENST00000526204 NPLQ9BXD5 320 aaPredicted RBP20.82■□□□□ 0.92
VPS28-205ENST00000526204 OCEL1Q9H607 264 aa20.82■□□□□ 0.92
VPS28-205ENST00000526204 LRTM1Q9HBL6 345 aa20.82■□□□□ 0.92
VPS28-205ENST00000526204 CPQQ9Y646 472 aa20.82■□□□□ 0.92
VPS28-205ENST00000526204 UPK1AO00322 258 aa20.81■□□□□ 0.92
VPS28-205ENST00000526204 FFAR3O14843 346 aa20.81■□□□□ 0.92
VPS28-205ENST00000526204 GPR42O15529 346 aa20.81■□□□□ 0.92
VPS28-205ENST00000526204 DFNA5O60443 496 aa20.81■□□□□ 0.92
VPS28-205ENST00000526204 OLFM2O95897 454 aa20.81■□□□□ 0.92
VPS28-205ENST00000526204 IGSF6O95976 241 aa20.81■□□□□ 0.92
VPS28-205ENST00000526204 GNRH1P01148 92 aa20.81■□□□□ 0.92
VPS28-205ENST00000526204 PTGR1Q14914 329 aa20.81■□□□□ 0.92
VPS28-205ENST00000526204 FAM174BQ3ZCQ3 159 aa20.81■□□□□ 0.92
VPS28-205ENST00000526204 TBPL2Q6SJ96 375 aa20.81■□□□□ 0.92
VPS28-205ENST00000526204 CLVS1Q8IUQ0 354 aaPredicted RBP20.81■□□□□ 0.92
VPS28-205ENST00000526204 TERB1Q8NA31 727 aa20.81■□□□□ 0.92
VPS28-205ENST00000526204 OR52E4Q8NGH9 312 aa20.81■□□□□ 0.92
VPS28-205ENST00000526204 ZNF420Q8TAQ5 688 aaPredicted RBP20.81■□□□□ 0.92
VPS28-205ENST00000526204 ISOC1Q96CN7 298 aa20.81■□□□□ 0.92
VPS28-205ENST00000526204 SCLYQ96I15 445 aa20.81■□□□□ 0.92
VPS28-205ENST00000526204 KCTD5Q9NXV2 234 aa20.81■□□□□ 0.92
VPS28-205ENST00000526204 LSM7Q9UK45 103 aaKnown RBP20.81■□□□□ 0.92
VPS28-205ENST00000526204 ZFC3H1O60293 1989 aaKnown RBP20.81■□□□□ 0.92
VPS28-205ENST00000526204 MANBAO00462 879 aa20.81■□□□□ 0.92
VPS28-205ENST00000526204 SEC22BO75396 215 aa20.81■□□□□ 0.92
VPS28-205ENST00000526204 STK16O75716 305 aa20.81■□□□□ 0.92
VPS28-205ENST00000526204 PGRP06401 933 aa20.81■□□□□ 0.92
VPS28-205ENST00000526204 SERPINA4P29622 427 aa20.81■□□□□ 0.92
VPS28-205ENST00000526204 NSG1P42857 185 aa20.81■□□□□ 0.92
VPS28-205ENST00000526204 HPCAP84074 193 aa20.81■□□□□ 0.92
VPS28-205ENST00000526204 CYP4F3Q08477 520 aa20.81■□□□□ 0.92
VPS28-205ENST00000526204 DCTN2Q13561 401 aaKnown RBP20.81■□□□□ 0.92
VPS28-205ENST00000526204 DAG1Q14118 895 aa20.81■□□□□ 0.92
VPS28-205ENST00000526204 OTUD3Q5T2D3 398 aaPredicted RBP20.81■□□□□ 0.92
VPS28-205ENST00000526204 MPP7Q5T2T1 576 aa20.81■□□□□ 0.92
VPS28-205ENST00000526204 TPGS1Q6ZTW0 290 aa20.81■□□□□ 0.92
VPS28-205ENST00000526204 LIX1Q8N485 282 aa20.81■□□□□ 0.92
VPS28-205ENST00000526204 SLAIN1Q8ND83 568 aa20.81■□□□□ 0.92
VPS28-205ENST00000526204 BHMTQ93088 406 aa20.81■□□□□ 0.92
VPS28-205ENST00000526204 POP5Q969H6 163 aaKnown RBP20.81■□□□□ 0.92
VPS28-205ENST00000526204 RDH12Q96NR8 316 aa20.81■□□□□ 0.92
VPS28-205ENST00000526204 LYSMD1Q96S90 227 aa20.81■□□□□ 0.92
VPS28-205ENST00000526204 CLMPQ9H6B4 373 aa20.81■□□□□ 0.92
VPS28-205ENST00000526204 NIPSNAP3AQ9UFN0 247 aaPredicted RBP20.81■□□□□ 0.92
VPS28-205ENST00000526204 AGAP14A8MT82 685 aa20.8■□□□□ 0.92
VPS28-205ENST00000526204 PARNO95453 639 aaKnown RBP20.8■□□□□ 0.92
VPS28-205ENST00000526204 HPRP00739 348 aa20.8■□□□□ 0.92
VPS28-205ENST00000526204 ANXA5P08758 320 aa20.8■□□□□ 0.92
VPS28-205ENST00000526204 AAK1Q2M2I8 961 aa20.8■□□□□ 0.92
VPS28-205ENST00000526204 TMEM214Q6NUQ4 689 aaKnown RBP20.8■□□□□ 0.92
VPS28-205ENST00000526204 GPR180Q86V85 440 aa20.8■□□□□ 0.92
VPS28-205ENST00000526204 TCEAL8Q8IYN2 117 aa20.8■□□□□ 0.92
VPS28-205ENST00000526204 ZNF548Q8NEK5 533 aaPredicted RBP20.8■□□□□ 0.92
VPS28-205ENST00000526204 GAB3Q8WWW8 586 aa20.8■□□□□ 0.92
VPS28-205ENST00000526204 FIG4Q92562 907 aa20.8■□□□□ 0.92
VPS28-205ENST00000526204 USP7Q93009 1102 aa20.8■□□□□ 0.92
VPS28-205ENST00000526204 TMBIM1Q969X1 311 aa20.8■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms