RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 CAVIN2O95810 425 aa3.62□□□□□ -1.83
CD44-217ENST00000525348 TBX6O95947 436 aaPredicted RBP3.62□□□□□ -1.83
CD44-217ENST00000525348 NGFP01138 241 aa3.62□□□□□ -1.83
CD44-217ENST00000525348 RB1P06400 928 aa3.62□□□□□ -1.83
CD44-217ENST00000525348 CLTBP09497 229 aa3.62□□□□□ -1.83
CD44-217ENST00000525348 FRMD6-AS1P0C7T7 363 aa3.62□□□□□ -1.83
CD44-217ENST00000525348 ZNF26P17031 533 aaPredicted RBP3.62□□□□□ -1.83
CD44-217ENST00000525348 GTF2A1P52655 376 aaPredicted RBP3.62□□□□□ -1.83
CD44-217ENST00000525348 GAGE2BQ13066 116 aa3.62□□□□□ -1.83
CD44-217ENST00000525348 DDX10Q13206 875 aaKnown RBP3.62□□□□□ -1.83
CD44-217ENST00000525348 KCTD2Q14681 263 aa3.62□□□□□ -1.83
CD44-217ENST00000525348 GAGE2EQ4V326 116 aa3.62□□□□□ -1.83
CD44-217ENST00000525348 FAAH2Q6GMR7 532 aa3.62□□□□□ -1.83
CD44-217ENST00000525348 GAGE2AQ6NT46 116 aa3.62□□□□□ -1.83
CD44-217ENST00000525348 TMEM154Q6P9G4 183 aa3.62□□□□□ -1.83
CD44-217ENST00000525348 CTR9Q6PD62 1173 aa3.62□□□□□ -1.83
CD44-217ENST00000525348 OTUD6AQ7L8S5 288 aa3.62□□□□□ -1.83
CD44-217ENST00000525348 ARID3BQ8IVW6 561 aaPredicted RBP3.62□□□□□ -1.83
CD44-217ENST00000525348 ZNF485Q8NCK3 441 aa3.62□□□□□ -1.83
CD44-217ENST00000525348 TBC1D16Q8TBP0 767 aa3.62□□□□□ -1.83
CD44-217ENST00000525348 WDR20Q8TBZ3 569 aa3.62□□□□□ -1.83
CD44-217ENST00000525348 SCFD2Q8WU76 684 aa3.62□□□□□ -1.83
CD44-217ENST00000525348 GIMAP1Q8WWP7 306 aa3.62□□□□□ -1.83
CD44-217ENST00000525348 HDAC2Q92769 488 aaKnown RBP3.62□□□□□ -1.83
CD44-217ENST00000525348 PGAM5Q96HS1 289 aa3.62□□□□□ -1.83
CD44-217ENST00000525348 RHNO1Q9BSD3 238 aa3.62□□□□□ -1.83
CD44-217ENST00000525348 FTOQ9C0B1 505 aaKnown RBP eCLIP3.62□□□□□ -1.83
CD44-217ENST00000525348 RWDD1Q9H446 243 aaPredicted RBP3.62□□□□□ -1.83
CD44-217ENST00000525348 C2orf42Q9NWW7 574 aa3.62□□□□□ -1.83
CD44-217ENST00000525348 TMEM181Q9P2C4 612 aa3.62□□□□□ -1.83
CD44-217ENST00000525348 GAGE2DQ9UEU5 116 aa3.62□□□□□ -1.83
CD44-217ENST00000525348 ISY1Q9ULR0 285 aaKnown RBP3.62□□□□□ -1.83
CD44-217ENST00000525348 KCNJ14Q9UNX9 436 aa3.62□□□□□ -1.83
CD44-217ENST00000525348 PYGO1Q9Y3Y4 419 aa3.62□□□□□ -1.83
CD44-217ENST00000525348 KNSTRNQ9Y448 316 aa3.62□□□□□ -1.83
CD44-217ENST00000525348 PCDHGA5Q9Y5G8 931 aa3.62□□□□□ -1.83
CD44-217ENST00000525348 ERCC6L2Q5T890 1561 aa3.62□□□□□ -1.83
CD44-217ENST00000525348 DISP3Q9P2K9 1392 aa3.62□□□□□ -1.83
CD44-217ENST00000525348 FSD2A1L4K1 749 aa3.61□□□□□ -1.83
CD44-217ENST00000525348 OR6C76A6NM76 312 aa3.61□□□□□ -1.83
CD44-217ENST00000525348 CDRT15L2A8MXV6 281 aa3.61□□□□□ -1.83
CD44-217ENST00000525348 NDUFS4O43181 175 aa3.61□□□□□ -1.83
CD44-217ENST00000525348 KIF5CO60282 957 aa3.61□□□□□ -1.83
CD44-217ENST00000525348 RSL1D1O76021 490 aaKnown RBP3.61□□□□□ -1.83
CD44-217ENST00000525348 CSPG5O95196 566 aa3.61□□□□□ -1.83
CD44-217ENST00000525348 CEACAM1P13688 526 aa3.61□□□□□ -1.83
CD44-217ENST00000525348 PRLRP16471 622 aa3.61□□□□□ -1.83
CD44-217ENST00000525348 STIP1P31948 543 aaKnown RBP3.61□□□□□ -1.83
CD44-217ENST00000525348 GSCP56915 257 aaPredicted RBP3.61□□□□□ -1.83
CD44-217ENST00000525348 PNRC1Q12796 327 aaPredicted RBP3.61□□□□□ -1.83
CD44-217ENST00000525348 SIM2Q14190 667 aaPredicted RBP3.61□□□□□ -1.83
CD44-217ENST00000525348 CRYMQ14894 314 aa3.61□□□□□ -1.83
CD44-217ENST00000525348 CCDC92Q53HC0 331 aaPredicted RBP3.61□□□□□ -1.83
CD44-217ENST00000525348 KLC3Q6P597 504 aa3.61□□□□□ -1.83
CD44-217ENST00000525348 CCDC73Q6ZRK6 1079 aa3.61□□□□□ -1.83
CD44-217ENST00000525348 SH2D5Q6ZV89 423 aa3.61□□□□□ -1.83
CD44-217ENST00000525348 AACSQ86V21 672 aa3.61□□□□□ -1.83
CD44-217ENST00000525348 LMNTD2Q8IXW0 634 aa3.61□□□□□ -1.83
CD44-217ENST00000525348 TEX11Q8IYF3 940 aa3.61□□□□□ -1.83
CD44-217ENST00000525348 TTC39CQ8N584 583 aa3.61□□□□□ -1.83
CD44-217ENST00000525348 FAM184AQ8NB25 1140 aa3.61□□□□□ -1.83
CD44-217ENST00000525348 DAZLQ92904 295 aaKnown RBP3.61□□□□□ -1.83
CD44-217ENST00000525348 ASCL2Q99929 193 aa3.61□□□□□ -1.83
CD44-217ENST00000525348 PPIL3Q9H2H8 161 aaKnown RBP3.61□□□□□ -1.83
CD44-217ENST00000525348 ZNF71Q9NQZ8 489 aaPredicted RBP3.61□□□□□ -1.83
CD44-217ENST00000525348 NPAP1Q9NZP6 1156 aa3.61□□□□□ -1.83
CD44-217ENST00000525348 BLOC1S6Q9UL45 172 aa3.61□□□□□ -1.83
CD44-217ENST00000525348 SOS1Q07889 1333 aaPredicted RBP3.61□□□□□ -1.83
CD44-217ENST00000525348 STK36Q9NRP7 1315 aa3.61□□□□□ -1.83
CD44-217ENST00000525348 PRDM2Q13029 1718 aa3.61□□□□□ -1.83
CD44-217ENST00000525348 AQRO60306 1485 aaKnown RBP eCLIP3.6□□□□□ -1.83
CD44-217ENST00000525348 MROH2BQ7Z745 1585 aa3.6□□□□□ -1.83
CD44-217ENST00000525348 KDM6BO15054 1643 aa3.6□□□□□ -1.83
CD44-217ENST00000525348 WIZO95785 1651 aa3.6□□□□□ -1.83
CD44-217ENST00000525348 IGKV3D-15A0A087WSY6 115 aa3.6□□□□□ -1.83
CD44-217ENST00000525348 PRSS51A0A1B0GVH4 220 aa3.6□□□□□ -1.83
CD44-217ENST00000525348 TMEM110-MUSTN1A8MSY1 372 aa3.6□□□□□ -1.83
CD44-217ENST00000525348 TO15178 435 aa3.6□□□□□ -1.83
CD44-217ENST00000525348 CLIC2O15247 247 aa3.6□□□□□ -1.83
CD44-217ENST00000525348 IGLV1-44P01699 117 aa3.6□□□□□ -1.83
CD44-217ENST00000525348 MMP9P14780 707 aa3.6□□□□□ -1.83
CD44-217ENST00000525348 PSMC4P43686 418 aa3.6□□□□□ -1.83
CD44-217ENST00000525348 DRG2P55039 364 aaKnown RBP3.6□□□□□ -1.83
CD44-217ENST00000525348 TMEM187Q14656 261 aa3.6□□□□□ -1.83
CD44-217ENST00000525348 MAPRE1Q15691 268 aaKnown RBP3.6□□□□□ -1.83
CD44-217ENST00000525348 FFAR4Q5NUL3 377 aa3.6□□□□□ -1.83
CD44-217ENST00000525348 GCNT6Q5T4J0 391 aa3.6□□□□□ -1.83
CD44-217ENST00000525348 ADALQ6DHV7 355 aa3.6□□□□□ -1.83
CD44-217ENST00000525348 ZNF790Q6PG37 636 aa3.6□□□□□ -1.83
CD44-217ENST00000525348 C1orf122Q6ZSJ8 110 aa3.6□□□□□ -1.83
CD44-217ENST00000525348 MAATS1Q7Z4T9 603 aa3.6□□□□□ -1.83
CD44-217ENST00000525348 GALNT5Q7Z7M9 940 aa3.6□□□□□ -1.83
CD44-217ENST00000525348 ISCA2Q86U28 154 aa3.6□□□□□ -1.83
CD44-217ENST00000525348 GPALPP1Q8IXQ4 340 aa3.6□□□□□ -1.83
CD44-217ENST00000525348 ADGRF2Q8IZF7 708 aa3.6□□□□□ -1.83
CD44-217ENST00000525348 MAPK1IP1LQ8NDC0 245 aa3.6□□□□□ -1.83
CD44-217ENST00000525348 C17orf50Q8WW18 174 aa3.6□□□□□ -1.83
CD44-217ENST00000525348 TEKT1Q969V4 418 aa3.6□□□□□ -1.83
CD44-217ENST00000525348 PRAC1Q96KF2 57 aa3.6□□□□□ -1.83
CD44-217ENST00000525348 TIGD1Q96MW7 591 aa3.6□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms