RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 ZCWPW2A0A1B0GU75 182 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 TLL1O43897 1013 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 AOC2O75106 756 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 RSL1D1O76021 490 aaKnown RBP11.51□□□□□ -0.57
SYNPO-204ENST00000519664 CHRNA1P02708 482 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 TNNI3P19429 210 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 CCR4P51679 360 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 LYPLAL1Q5VWZ2 237 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 Q6ZVU0 165 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 STARD8Q92502 1023 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 KAT2AQ92830 837 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 KLK6Q92876 244 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 EXOSC8Q96B26 276 aaKnown RBP11.51□□□□□ -0.57
SYNPO-204ENST00000519664 C20orf27Q9GZN8 174 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 ITGB4P16144 1822 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 NUP205Q92621 2012 aa11.51□□□□□ -0.57
SYNPO-204ENST00000519664 DNAJC25-GNG10A0A024R161 153 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 TMEM88BA6NKF7 163 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 LOC730098B7Z3J9 87 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 H3BNX3 289 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 KERAO60938 352 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 FKTNO75072 461 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 OPN1SWP03999 348 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 SLC35G4P0C7Q5 338 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 CAPN13Q6MZZ7 669 aaPredicted RBP11.5□□□□□ -0.57
SYNPO-204ENST00000519664 TRIM40Q6P9F5 258 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 AMER2Q8N7J2 671 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 GTPBP3Q969Y2 492 aaKnown RBP11.5□□□□□ -0.57
SYNPO-204ENST00000519664 TADA1Q96BN2 335 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 LRRC3Q9BY71 257 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 TLE6Q9H808 572 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 OSER1Q9NX31 292 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 SQORQ9Y6N5 450 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 PRR23D1E9PI22 279 aaPredicted RBP11.5□□□□□ -0.57
SYNPO-204ENST00000519664 K7EPI3 171 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 GRM6O15303 877 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 COQ9O75208 318 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 OAS1P00973 400 aaKnown RBP11.5□□□□□ -0.57
SYNPO-204ENST00000519664 PRR23D2P0DMB1 279 aaPredicted RBP11.5□□□□□ -0.57
SYNPO-204ENST00000519664 GJA5P36382 358 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 NSG1P42857 185 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 SSR2P43308 183 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 ACADVLP49748 655 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 NIPAL4Q0D2K0 466 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 SERINC3Q13530 473 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 PTGR1Q14914 329 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 SPANXN4Q5MJ08 99 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 PIK3R6Q5UE93 754 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 PDSS2Q86YH6 399 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 ARNTL2Q8WYA1 636 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 HPS1Q92902 700 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 FBXL20Q96IG2 436 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 MTMR10Q9NXD2 777 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 SAMD4AQ9UPU9 718 aaKnown RBP11.5□□□□□ -0.57
SYNPO-204ENST00000519664 YIPF1Q9Y548 306 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 SLC9A3R1O14745 358 aaPredicted RBP11.5□□□□□ -0.57
SYNPO-204ENST00000519664 SLC28A2O43868 658 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 RNASEH2AO75792 299 aaKnown RBP11.5□□□□□ -0.57
SYNPO-204ENST00000519664 PDE12Q6L8Q7 609 aaKnown RBP11.5□□□□□ -0.57
SYNPO-204ENST00000519664 C19orf18Q8NEA5 215 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 CYB5D2Q8WUJ1 264 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 TRIB2Q92519 343 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 HTRA1Q92743 480 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 CGREF1Q99674 301 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 HDHD2Q9H0R4 259 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 CRISPLD1Q9H336 500 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 DEC1Q9P2X7 70 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 ITM2BQ9Y287 266 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 AP3M1Q9Y2T2 418 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 LTBP3Q9NS15 1303 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 ANKRD33BA6NCL7 494 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 PSMD11O00231 422 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 TFECO14948 347 aaPredicted RBP11.5□□□□□ -0.57
SYNPO-204ENST00000519664 LDB2O43679 373 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 POP4O95707 220 aaKnown RBP11.5□□□□□ -0.57
SYNPO-204ENST00000519664 EPHX1P07099 455 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 CDKN2DP55273 166 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 ANGPT1Q15389 498 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 TGFBIQ15582 683 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 CCDC157Q569K6 752 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 ZNF678Q5SXM1 525 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 SULT1C3Q6IMI6 304 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 SLC34A3Q8N130 599 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 OR10G6Q8NH81 332 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 FERD3LQ96RJ6 166 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 NODALQ96S42 347 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 MAP10Q9P2G4 905 aa11.5□□□□□ -0.57
SYNPO-204ENST00000519664 RBMX2Q9Y388 322 aaKnown RBP11.5□□□□□ -0.57
SYNPO-204ENST00000519664 ATG13O75143 517 aa11.49□□□□□ -0.57
SYNPO-204ENST00000519664 BCAS2O75934 225 aaPredicted RBP11.49□□□□□ -0.57
SYNPO-204ENST00000519664 RPN2P04844 631 aa11.49□□□□□ -0.57
SYNPO-204ENST00000519664 CDH12P55289 794 aa11.49□□□□□ -0.57
SYNPO-204ENST00000519664 LSAMPQ13449 338 aa11.49□□□□□ -0.57
SYNPO-204ENST00000519664 CCNIQ14094 377 aa11.49□□□□□ -0.57
SYNPO-204ENST00000519664 ZNF57Q68EA5 555 aaPredicted RBP11.49□□□□□ -0.57
SYNPO-204ENST00000519664 OR4F3Q6IEY1 312 aa11.49□□□□□ -0.57
SYNPO-204ENST00000519664 PTCHD4Q6ZW05 846 aa11.49□□□□□ -0.57
SYNPO-204ENST00000519664 C17orf64Q86WR6 236 aa11.49□□□□□ -0.57
SYNPO-204ENST00000519664 HID1Q8IV36 788 aa11.49□□□□□ -0.57
SYNPO-204ENST00000519664 WDR36Q8NI36 951 aaKnown RBP11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms