RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 KRT33BQ14525 404 aa9.09□□□□□ -0.95
HDAC3-215ENST00000519474 KCNAB1Q14722 419 aa9.09□□□□□ -0.95
HDAC3-215ENST00000519474 BRD3Q15059 726 aa9.09□□□□□ -0.95
HDAC3-215ENST00000519474 TRIP13Q15645 432 aaPredicted RBP9.09□□□□□ -0.95
HDAC3-215ENST00000519474 TBR1Q16650 682 aa9.09□□□□□ -0.95
HDAC3-215ENST00000519474 LYPLAL1Q5VWZ2 237 aa9.09□□□□□ -0.95
HDAC3-215ENST00000519474 TTC27Q6P3X3 843 aa9.09□□□□□ -0.95
HDAC3-215ENST00000519474 PACS1Q6VY07 963 aa9.09□□□□□ -0.95
HDAC3-215ENST00000519474 NLRP9Q7RTR0 991 aa9.09□□□□□ -0.95
HDAC3-215ENST00000519474 GSTA5Q7RTV2 222 aa9.09□□□□□ -0.95
HDAC3-215ENST00000519474 LDB1Q86U70 411 aaPredicted RBP9.09□□□□□ -0.95
HDAC3-215ENST00000519474 UNC5BQ8IZJ1 945 aa9.09□□□□□ -0.95
HDAC3-215ENST00000519474 ZSCAN1Q8NBB4 408 aa9.09□□□□□ -0.95
HDAC3-215ENST00000519474 SIDT2Q8NBJ9 832 aaKnown RBP9.09□□□□□ -0.95
HDAC3-215ENST00000519474 ACVR1CQ8NER5 493 aa9.09□□□□□ -0.95
HDAC3-215ENST00000519474 OR6P1Q8NGX9 317 aa9.09□□□□□ -0.95
HDAC3-215ENST00000519474 PEX13Q92968 403 aa9.09□□□□□ -0.95
HDAC3-215ENST00000519474 PBKQ96KB5 322 aa9.09□□□□□ -0.95
HDAC3-215ENST00000519474 CARD6Q9BX69 1037 aa9.09□□□□□ -0.95
HDAC3-215ENST00000519474 TRIT1Q9H3H1 467 aaKnown RBP9.09□□□□□ -0.95
HDAC3-215ENST00000519474 TFB2MQ9H5Q4 396 aaKnown RBP9.09□□□□□ -0.95
HDAC3-215ENST00000519474 MVB12BQ9H7P6 319 aa9.09□□□□□ -0.95
HDAC3-215ENST00000519474 EIF2B3Q9NR50 452 aaKnown RBP9.09□□□□□ -0.95
HDAC3-215ENST00000519474 HOMER3Q9NSC5 361 aa9.09□□□□□ -0.95
HDAC3-215ENST00000519474 TREX1Q9NSU2 369 aa9.09□□□□□ -0.95
HDAC3-215ENST00000519474 IL17BQ9UHF5 180 aa9.09□□□□□ -0.95
HDAC3-215ENST00000519474 TTC7AQ9ULT0 858 aaPredicted RBP9.09□□□□□ -0.95
HDAC3-215ENST00000519474 NEU2Q9Y3R4 380 aa9.09□□□□□ -0.95
HDAC3-215ENST00000519474 DSPP15924 2871 aaKnown RBP9.08□□□□□ -0.96
HDAC3-215ENST00000519474 UBA6A0AVT1 1052 aaPredicted RBP9.08□□□□□ -0.96
HDAC3-215ENST00000519474 IQCF5A8MTL0 148 aa9.08□□□□□ -0.96
HDAC3-215ENST00000519474 SMAPO00193 183 aa9.08□□□□□ -0.96
HDAC3-215ENST00000519474 QSOX1O00391 747 aa9.08□□□□□ -0.96
HDAC3-215ENST00000519474 IFRD1O00458 451 aaPredicted RBP9.08□□□□□ -0.96
HDAC3-215ENST00000519474 LIN7AO14910 233 aaPredicted RBP9.08□□□□□ -0.96
HDAC3-215ENST00000519474 ITGB2P05107 769 aa9.08□□□□□ -0.96
HDAC3-215ENST00000519474 OR56A5P0C7T3 313 aa9.08□□□□□ -0.96
HDAC3-215ENST00000519474 ITGB6P18564 788 aa9.08□□□□□ -0.96
HDAC3-215ENST00000519474 PRDX3P30048 256 aaKnown RBP9.08□□□□□ -0.96
HDAC3-215ENST00000519474 CCR7P32248 378 aa9.08□□□□□ -0.96
HDAC3-215ENST00000519474 HSD11B2P80365 405 aa9.08□□□□□ -0.96
HDAC3-215ENST00000519474 BASP1P80723 227 aaKnown RBP9.08□□□□□ -0.96
HDAC3-215ENST00000519474 CDK16Q00536 496 aa9.08□□□□□ -0.96
HDAC3-215ENST00000519474 BOP1Q14137 746 aaKnown RBP9.08□□□□□ -0.96
HDAC3-215ENST00000519474 MAP7Q14244 749 aa9.08□□□□□ -0.96
HDAC3-215ENST00000519474 PLCL1Q15111 1095 aa9.08□□□□□ -0.96
HDAC3-215ENST00000519474 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.08□□□□□ -0.96
HDAC3-215ENST00000519474 FASTKD1Q53R41 847 aaKnown RBP9.08□□□□□ -0.96
HDAC3-215ENST00000519474 PWWP2BQ6NUJ5 590 aa9.08□□□□□ -0.96
HDAC3-215ENST00000519474 LRRC8BQ6P9F7 803 aa9.08□□□□□ -0.96
HDAC3-215ENST00000519474 ZNF449Q6P9G9 518 aa9.08□□□□□ -0.96
HDAC3-215ENST00000519474 CES3Q6UWW8 571 aa9.08□□□□□ -0.96
HDAC3-215ENST00000519474 C6orf15Q6UXA7 325 aaPredicted RBP9.08□□□□□ -0.96
HDAC3-215ENST00000519474 BPHLQ86WA6 291 aaPredicted RBP9.08□□□□□ -0.96
HDAC3-215ENST00000519474 OOSP2Q86WS3 158 aa9.08□□□□□ -0.96
HDAC3-215ENST00000519474 KMT5CQ86Y97 462 aa9.08□□□□□ -0.96
HDAC3-215ENST00000519474 RASGRP3Q8IV61 690 aa9.08□□□□□ -0.96
HDAC3-215ENST00000519474 ADGRF3Q8IZF5 1079 aa9.08□□□□□ -0.96
HDAC3-215ENST00000519474 D2HGDHQ8N465 521 aa9.08□□□□□ -0.96
HDAC3-215ENST00000519474 OR52E1Q8NGJ3 308 aa9.08□□□□□ -0.96
HDAC3-215ENST00000519474 LCN9Q8WX39 176 aa9.08□□□□□ -0.96
HDAC3-215ENST00000519474 ELMO1Q92556 727 aa9.08□□□□□ -0.96
HDAC3-215ENST00000519474 MAGOHBQ96A72 148 aaKnown RBP9.08□□□□□ -0.96
HDAC3-215ENST00000519474 SLC45A3Q96JT2 553 aa9.08□□□□□ -0.96
HDAC3-215ENST00000519474 FCRL4Q96PJ5 515 aa9.08□□□□□ -0.96
HDAC3-215ENST00000519474 CD180Q99467 661 aa9.08□□□□□ -0.96
HDAC3-215ENST00000519474 TTC1Q99614 292 aa9.08□□□□□ -0.96
HDAC3-215ENST00000519474 KIFC1Q9BW19 673 aa9.08□□□□□ -0.96
HDAC3-215ENST00000519474 AP1M1Q9BXS5 423 aa9.08□□□□□ -0.96
HDAC3-215ENST00000519474 KCNF1Q9H3M0 494 aa9.08□□□□□ -0.96
HDAC3-215ENST00000519474 SRMSQ9H3Y6 488 aa9.08□□□□□ -0.96
HDAC3-215ENST00000519474 XKR8Q9H6D3 395 aa9.08□□□□□ -0.96
HDAC3-215ENST00000519474 VPS37BQ9H9H4 285 aa9.08□□□□□ -0.96
HDAC3-215ENST00000519474 FGF21Q9NSA1 209 aa9.08□□□□□ -0.96
HDAC3-215ENST00000519474 BFARQ9NZS9 450 aa9.08□□□□□ -0.96
HDAC3-215ENST00000519474 MARCH4Q9P2E8 410 aaPredicted RBP9.08□□□□□ -0.96
HDAC3-215ENST00000519474 CDYLQ9Y232 598 aa9.08□□□□□ -0.96
HDAC3-215ENST00000519474 PIKFYVEQ9Y2I7 2098 aa9.08□□□□□ -0.96
HDAC3-215ENST00000519474 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.07□□□□□ -0.96
HDAC3-215ENST00000519474 TLCD2A6NGC4 264 aa9.07□□□□□ -0.96
HDAC3-215ENST00000519474 SLC9B1P1A6NJY1 282 aa9.07□□□□□ -0.96
HDAC3-215ENST00000519474 AP3B1O00203 1094 aa9.07□□□□□ -0.96
HDAC3-215ENST00000519474 TERTO14746 1132 aaKnown RBP9.07□□□□□ -0.96
HDAC3-215ENST00000519474 CD3EAPO15446 510 aaKnown RBP9.07□□□□□ -0.96
HDAC3-215ENST00000519474 AVILO75366 819 aa9.07□□□□□ -0.96
HDAC3-215ENST00000519474 PEX14O75381 377 aa9.07□□□□□ -0.96
HDAC3-215ENST00000519474 GPC4O75487 556 aa9.07□□□□□ -0.96
HDAC3-215ENST00000519474 KIAA0754O94854 1291 aa9.07□□□□□ -0.96
HDAC3-215ENST00000519474 ZBTB11O95625 1053 aaPredicted RBP9.07□□□□□ -0.96
HDAC3-215ENST00000519474 KRT14P02533 472 aa9.07□□□□□ -0.96
HDAC3-215ENST00000519474 EBLN1P0CF75 366 aa9.07□□□□□ -0.96
HDAC3-215ENST00000519474 MGAT1P26572 445 aa9.07□□□□□ -0.96
HDAC3-215ENST00000519474 ARNTP27540 789 aa9.07□□□□□ -0.96
HDAC3-215ENST00000519474 COILP38432 576 aaPredicted RBP9.07□□□□□ -0.96
HDAC3-215ENST00000519474 MAGEA6P43360 314 aa9.07□□□□□ -0.96
HDAC3-215ENST00000519474 PRAMEP78395 509 aa9.07□□□□□ -0.96
HDAC3-215ENST00000519474 PLOD1Q02809 727 aaPredicted RBP9.07□□□□□ -0.96
HDAC3-215ENST00000519474 ACY1Q03154 408 aa9.07□□□□□ -0.96
HDAC3-215ENST00000519474 CYP1B1Q16678 543 aa9.07□□□□□ -0.96
HDAC3-215ENST00000519474 ARMC6Q6NXE6 501 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms