RNA–Protein interactions for RNA: ENST00000511859.5

RNF4-216, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 1,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-216ENST00000511859 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.2□□□□□ -0.62
RNF4-216ENST00000511859 CFAP20Q9Y6A4 193 aaKnown RBP11.2□□□□□ -0.62
RNF4-216ENST00000511859 CCDC78A2IDD5 438 aa11.19□□□□□ -0.62
RNF4-216ENST00000511859 TMCO5BA8MYB1 307 aa11.19□□□□□ -0.62
RNF4-216ENST00000511859 FAM155BO75949 473 aa11.19□□□□□ -0.62
RNF4-216ENST00000511859 UMODP07911 640 aa11.19□□□□□ -0.62
RNF4-216ENST00000511859 ST6GAL1P15907 406 aa11.19□□□□□ -0.62
RNF4-216ENST00000511859 MMP11P24347 488 aa11.19□□□□□ -0.62
RNF4-216ENST00000511859 PBX1P40424 430 aa11.19□□□□□ -0.62
RNF4-216ENST00000511859 CA7P43166 264 aa11.19□□□□□ -0.62
RNF4-216ENST00000511859 KRT33BQ14525 404 aa11.19□□□□□ -0.62
RNF4-216ENST00000511859 INAQ16352 499 aa11.19□□□□□ -0.62
RNF4-216ENST00000511859 LDLRAP1Q5SW96 308 aa11.19□□□□□ -0.62
RNF4-216ENST00000511859 DUS1LQ6P1R4 473 aaKnown RBP11.19□□□□□ -0.62
RNF4-216ENST00000511859 FAM83HQ6ZRV2 1179 aaPredicted RBP11.19□□□□□ -0.62
RNF4-216ENST00000511859 RASGEF1AQ8N9B8 481 aa11.19□□□□□ -0.62
RNF4-216ENST00000511859 OR1N1Q8NGS0 311 aa11.19□□□□□ -0.62
RNF4-216ENST00000511859 CHTF18Q8WVB6 975 aa11.19□□□□□ -0.62
RNF4-216ENST00000511859 NR4A3Q92570 626 aa11.19□□□□□ -0.62
RNF4-216ENST00000511859 VPS50Q96JG6 964 aa11.19□□□□□ -0.62
RNF4-216ENST00000511859 WWP1Q9H0M0 922 aa11.19□□□□□ -0.62
RNF4-216ENST00000511859 MCCC2Q9HCC0 563 aa11.19□□□□□ -0.62
RNF4-216ENST00000511859 MRPL47Q9HD33 250 aaKnown RBP11.19□□□□□ -0.62
RNF4-216ENST00000511859 SLC6A20Q9NP91 592 aa11.19□□□□□ -0.62
RNF4-216ENST00000511859 ZNF711Q9Y462 761 aa11.19□□□□□ -0.62
RNF4-216ENST00000511859 HEBP2Q9Y5Z4 205 aa11.19□□□□□ -0.62
RNF4-216ENST00000511859 GSAPA4D1B5 854 aa11.18□□□□□ -0.62
RNF4-216ENST00000511859 MGAT4DA6NG13 374 aa11.18□□□□□ -0.62
RNF4-216ENST00000511859 ATMINO43313 823 aaPredicted RBP11.18□□□□□ -0.62
RNF4-216ENST00000511859 OR2B3O76000 313 aa11.18□□□□□ -0.62
RNF4-216ENST00000511859 PYGMP11217 842 aa11.18□□□□□ -0.62
RNF4-216ENST00000511859 FERP16591 822 aa11.18□□□□□ -0.62
RNF4-216ENST00000511859 LMAN1P49257 510 aa11.18□□□□□ -0.62
RNF4-216ENST00000511859 TPM4P67936 248 aa11.18□□□□□ -0.62
RNF4-216ENST00000511859 GSE1Q14687 1217 aa11.18□□□□□ -0.62
RNF4-216ENST00000511859 PAFAH1B3Q15102 231 aaKnown RBP11.18□□□□□ -0.62
RNF4-216ENST00000511859 C1orf189Q5VU69 101 aa11.18□□□□□ -0.62
RNF4-216ENST00000511859 ZDHHC20Q5W0Z9 365 aa11.18□□□□□ -0.62
RNF4-216ENST00000511859 ISLR2Q6UXK2 745 aa11.18□□□□□ -0.62
RNF4-216ENST00000511859 CDHR3Q6ZTQ4 885 aa11.18□□□□□ -0.62
RNF4-216ENST00000511859 MMP21Q8N119 569 aa11.18□□□□□ -0.62
RNF4-216ENST00000511859 ACVR1CQ8NER5 493 aa11.18□□□□□ -0.62
RNF4-216ENST00000511859 CPLX3Q8WVH0 158 aa11.18□□□□□ -0.62
RNF4-216ENST00000511859 TRIB3Q96RU7 358 aa11.18□□□□□ -0.62
RNF4-216ENST00000511859 SPOCK3Q9BQ16 436 aa11.18□□□□□ -0.62
RNF4-216ENST00000511859 ANP32EQ9BTT0 268 aa11.18□□□□□ -0.62
RNF4-216ENST00000511859 SRMSQ9H3Y6 488 aa11.18□□□□□ -0.62
RNF4-216ENST00000511859 FBXL4Q9UKA2 621 aa11.18□□□□□ -0.62
RNF4-216ENST00000511859 CDYLQ9Y232 598 aa11.18□□□□□ -0.62
RNF4-216ENST00000511859 SCINQ9Y6U3 715 aa11.18□□□□□ -0.62
RNF4-216ENST00000511859 PRRC2AP48634 2157 aaKnown RBP11.18□□□□□ -0.62
RNF4-216ENST00000511859 FAM221AA4D161 298 aa11.17□□□□□ -0.62
RNF4-216ENST00000511859 MFSD11O43934 449 aa11.17□□□□□ -0.62
RNF4-216ENST00000511859 CNOT3O75175 753 aaKnown RBP11.17□□□□□ -0.62
RNF4-216ENST00000511859 NADKO95544 446 aaPredicted RBP11.17□□□□□ -0.62
RNF4-216ENST00000511859 SLC4A1P02730 911 aa11.17□□□□□ -0.62
RNF4-216ENST00000511859 FTLP02792 175 aaPredicted RBP11.17□□□□□ -0.62
RNF4-216ENST00000511859 PIRTP0C851 137 aa11.17□□□□□ -0.62
RNF4-216ENST00000511859 GZMAP12544 262 aa11.17□□□□□ -0.62
RNF4-216ENST00000511859 CD99P14209 185 aa11.17□□□□□ -0.62
RNF4-216ENST00000511859 MX2P20592 715 aa11.17□□□□□ -0.62
RNF4-216ENST00000511859 HMGCLP35914 325 aa11.17□□□□□ -0.62
RNF4-216ENST00000511859 SMSP52788 366 aa11.17□□□□□ -0.62
RNF4-216ENST00000511859 CTSCP53634 463 aa11.17□□□□□ -0.62
RNF4-216ENST00000511859 CASP6P55212 293 aa11.17□□□□□ -0.62
RNF4-216ENST00000511859 TLE4Q04727 773 aa11.17□□□□□ -0.62
RNF4-216ENST00000511859 RBPJQ06330 500 aa11.17□□□□□ -0.62
RNF4-216ENST00000511859 MFAP5Q13361 173 aa11.17□□□□□ -0.62
RNF4-216ENST00000511859 PIGHQ14442 188 aaPredicted RBP11.17□□□□□ -0.62
RNF4-216ENST00000511859 KRT81Q14533 505 aa11.17□□□□□ -0.62
RNF4-216ENST00000511859 NKAIN1Q4KMZ8 207 aa11.17□□□□□ -0.62
RNF4-216ENST00000511859 CCDC70Q6NSX1 233 aa11.17□□□□□ -0.62
RNF4-216ENST00000511859 CEP97Q8IW35 865 aa11.17□□□□□ -0.62
RNF4-216ENST00000511859 CATSPER1Q8NEC5 780 aa11.17□□□□□ -0.62
RNF4-216ENST00000511859 OR2L2Q8NH16 312 aa11.17□□□□□ -0.62
RNF4-216ENST00000511859 FAM71BQ8TC56 605 aa11.17□□□□□ -0.62
RNF4-216ENST00000511859 LCN9Q8WX39 176 aa11.17□□□□□ -0.62
RNF4-216ENST00000511859 MTFMTQ96DP5 389 aaKnown RBP11.17□□□□□ -0.62
RNF4-216ENST00000511859 MAGEB10Q96LZ2 347 aaPredicted RBP11.17□□□□□ -0.62
RNF4-216ENST00000511859 TMUB1Q9BVT8 246 aa11.17□□□□□ -0.62
RNF4-216ENST00000511859 CHRNA10Q9GZZ6 450 aa11.17□□□□□ -0.62
RNF4-216ENST00000511859 TXLNGQ9NUQ3 528 aa11.17□□□□□ -0.62
RNF4-216ENST00000511859 LIMA1Q9UHB6 759 aaKnown RBP11.17□□□□□ -0.62
RNF4-216ENST00000511859 CDC23Q9UJX2 597 aa11.17□□□□□ -0.62
RNF4-216ENST00000511859 OR2AG2A6NM03 316 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 H3BMH7 237 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 UNC5CO95185 931 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 CLDN14O95500 239 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 SERPINC1P01008 464 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 ALBP02768 609 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 SLC35G4P0C7Q5 338 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 TCF4P15884 667 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 FANCCQ00597 558 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 LONRF2Q1L5Z9 754 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 NCBP2-AS2Q69YL0 99 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 TLDC1Q6P9B6 456 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 IRF2BP2Q7Z5L9 587 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 DDHD1Q8NEL9 900 aa11.16□□□□□ -0.62
RNF4-216ENST00000511859 SPDYE1Q8NFV5 336 aaPredicted RBP11.16□□□□□ -0.62
RNF4-216ENST00000511859 DNAJB8Q8NHS0 232 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms