RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 POT1Q9NUX5 634 aa28.92■■■□□ 2.22
LIMCH1-211ENST00000509638 ASXL3Q9C0F0 2248 aa28.91■■■□□ 2.22
LIMCH1-211ENST00000509638 PHGDHO43175 533 aaKnown RBP28.91■■■□□ 2.22
LIMCH1-211ENST00000509638 KRT38O76015 456 aa28.91■■■□□ 2.22
LIMCH1-211ENST00000509638 ENO3P13929 434 aaPredicted RBP28.91■■■□□ 2.22
LIMCH1-211ENST00000509638 STMN1P16949 149 aa28.91■■■□□ 2.22
LIMCH1-211ENST00000509638 ZNF37AP17032 561 aaPredicted RBP28.91■■■□□ 2.22
LIMCH1-211ENST00000509638 XRCC1P18887 633 aaPredicted RBP28.91■■■□□ 2.22
LIMCH1-211ENST00000509638 DNAJC3Q13217 504 aa28.91■■■□□ 2.22
LIMCH1-211ENST00000509638 AVL9Q8NBF6 648 aa28.91■■■□□ 2.22
LIMCH1-211ENST00000509638 EPS8L3Q8TE67 593 aaKnown RBP28.91■■■□□ 2.22
LIMCH1-211ENST00000509638 TFGQ92734 400 aaPredicted RBP28.91■■■□□ 2.22
LIMCH1-211ENST00000509638 LINGO1Q96FE5 620 aa28.91■■■□□ 2.22
LIMCH1-211ENST00000509638 POPDC3Q9HBV1 291 aa28.91■■■□□ 2.22
LIMCH1-211ENST00000509638 EVA1BQ9NVM1 165 aa28.91■■■□□ 2.22
LIMCH1-211ENST00000509638 RNF215Q9Y6U7 377 aa28.91■■■□□ 2.22
LIMCH1-211ENST00000509638 PRAMEF33A0A0G2JMD5 474 aa28.9■■■□□ 2.22
LIMCH1-211ENST00000509638 SMIM23A6NLE4 172 aa28.9■■■□□ 2.22
LIMCH1-211ENST00000509638 VIPP01282 170 aa28.9■■■□□ 2.22
LIMCH1-211ENST00000509638 CBSLP0DN79 551 aa28.9■■■□□ 2.22
LIMCH1-211ENST00000509638 CBSP35520 551 aa28.9■■■□□ 2.22
LIMCH1-211ENST00000509638 ADGRD1Q6QNK2 874 aa28.9■■■□□ 2.22
LIMCH1-211ENST00000509638 PIWIL4Q7Z3Z4 852 aaKnown RBP28.9■■■□□ 2.22
LIMCH1-211ENST00000509638 SLC32A1Q9H598 525 aa28.9■■■□□ 2.22
LIMCH1-211ENST00000509638 GPAMQ9HCL2 828 aa28.9■■■□□ 2.22
LIMCH1-211ENST00000509638 CTNNAL1Q9UBT7 734 aa28.9■■■□□ 2.22
LIMCH1-211ENST00000509638 ASF1AQ9Y294 204 aa28.9■■■□□ 2.22
LIMCH1-211ENST00000509638 HEBP2Q9Y5Z4 205 aa28.9■■■□□ 2.22
LIMCH1-211ENST00000509638 EIF3FO00303 357 aaPredicted RBP28.89■■■□□ 2.22
LIMCH1-211ENST00000509638 TM4SF5O14894 197 aa28.89■■■□□ 2.22
LIMCH1-211ENST00000509638 NUDT21O43809 227 aaKnown RBP28.89■■■□□ 2.22
LIMCH1-211ENST00000509638 GLB1P16278 677 aa28.89■■■□□ 2.22
LIMCH1-211ENST00000509638 CKMT2P17540 419 aa28.89■■■□□ 2.22
LIMCH1-211ENST00000509638 CNTFP26441 200 aa28.89■■■□□ 2.22
LIMCH1-211ENST00000509638 SLCO1A2P46721 670 aa28.89■■■□□ 2.22
LIMCH1-211ENST00000509638 RGS4P49798 205 aa28.89■■■□□ 2.22
LIMCH1-211ENST00000509638 RAB10P61026 200 aa28.89■■■□□ 2.22
LIMCH1-211ENST00000509638 ABRQ12979 859 aa28.89■■■□□ 2.22
LIMCH1-211ENST00000509638 RSPO4Q2I0M5 234 aaPredicted RBP28.89■■■□□ 2.22
LIMCH1-211ENST00000509638 BEND6Q5SZJ8 279 aaPredicted RBP28.89■■■□□ 2.22
LIMCH1-211ENST00000509638 CHCHD2P9Q5T1J5 151 aaPredicted RBP28.89■■■□□ 2.22
LIMCH1-211ENST00000509638 TMEM207Q6UWW9 146 aa28.89■■■□□ 2.22
LIMCH1-211ENST00000509638 CFAP61Q8NHU2 1237 aa28.89■■■□□ 2.22
LIMCH1-211ENST00000509638 EEF1AKMT1Q8WVE0 214 aa28.89■■■□□ 2.22
LIMCH1-211ENST00000509638 NAT6Q93015 286 aa28.89■■■□□ 2.22
LIMCH1-211ENST00000509638 PPCSQ9HAB8 311 aa28.89■■■□□ 2.22
LIMCH1-211ENST00000509638 LRIT1Q9P2V4 623 aa28.89■■■□□ 2.22
LIMCH1-211ENST00000509638 PLAAQ9Y263 795 aa28.89■■■□□ 2.22
LIMCH1-211ENST00000509638 NFS1Q9Y697 457 aa28.89■■■□□ 2.22
LIMCH1-211ENST00000509638 DCHS1Q96JQ0 3298 aa28.89■■■□□ 2.21
LIMCH1-211ENST00000509638 CPED1A4D0V7 1026 aa28.88■■■□□ 2.21
LIMCH1-211ENST00000509638 KRT37O76014 449 aa28.88■■■□□ 2.21
LIMCH1-211ENST00000509638 SERPINB8P50452 374 aa28.88■■■□□ 2.21
LIMCH1-211ENST00000509638 DUSP3P51452 185 aaPredicted RBP28.88■■■□□ 2.21
LIMCH1-211ENST00000509638 IL2P60568 153 aa28.88■■■□□ 2.21
LIMCH1-211ENST00000509638 IFFO1Q0D2I5 559 aa28.88■■■□□ 2.21
LIMCH1-211ENST00000509638 OR5AR1Q8NGP9 310 aa28.88■■■□□ 2.21
LIMCH1-211ENST00000509638 HNRNPLLQ8WVV9 542 aaKnown RBP28.88■■■□□ 2.21
LIMCH1-211ENST00000509638 CCDC74AQ96AQ1 378 aa28.88■■■□□ 2.21
LIMCH1-211ENST00000509638 SNX15Q9NRS6 342 aa28.88■■■□□ 2.21
LIMCH1-211ENST00000509638 EME2A4GXA9 379 aaPredicted RBP28.88■■■□□ 2.21
LIMCH1-211ENST00000509638 RHPN2P1A8MT19 583 aa28.88■■■□□ 2.21
LIMCH1-211ENST00000509638 TRIM49D1C9J1S8 452 aa28.88■■■□□ 2.21
LIMCH1-211ENST00000509638 PPM1DO15297 605 aa28.88■■■□□ 2.21
LIMCH1-211ENST00000509638 TNFSF14O43557 240 aa28.88■■■□□ 2.21
LIMCH1-211ENST00000509638 TSPAN12O95859 305 aa28.88■■■□□ 2.21
LIMCH1-211ENST00000509638 ALDOAP04075 364 aaKnown RBP28.88■■■□□ 2.21
LIMCH1-211ENST00000509638 KRT33BQ14525 404 aa28.88■■■□□ 2.21
LIMCH1-211ENST00000509638 LRRC8EQ6NSJ5 796 aa28.88■■■□□ 2.21
LIMCH1-211ENST00000509638 NEK10Q6ZWH5 1172 aa28.88■■■□□ 2.21
LIMCH1-211ENST00000509638 RAPH1Q70E73 1250 aa28.88■■■□□ 2.21
LIMCH1-211ENST00000509638 EFL1Q7Z2Z2 1120 aaKnown RBP28.88■■■□□ 2.21
LIMCH1-211ENST00000509638 ZNF761Q86XN6 746 aaPredicted RBP28.88■■■□□ 2.21
LIMCH1-211ENST00000509638 OR6C4Q8NGE1 309 aa28.88■■■□□ 2.21
LIMCH1-211ENST00000509638 HGH1Q9BTY7 390 aa28.88■■■□□ 2.21
LIMCH1-211ENST00000509638 SLC40A1Q9NP59 571 aa28.88■■■□□ 2.21
LIMCH1-211ENST00000509638 TBK1Q9UHD2 729 aa28.88■■■□□ 2.21
LIMCH1-211ENST00000509638 WISP3O95389 354 aaPredicted RBP28.87■■■□□ 2.21
LIMCH1-211ENST00000509638 CSRP1P21291 193 aaKnown RBP28.87■■■□□ 2.21
LIMCH1-211ENST00000509638 UNC5DQ6UXZ4 953 aa28.87■■■□□ 2.21
LIMCH1-211ENST00000509638 PHC3Q8NDX5 983 aa28.87■■■□□ 2.21
LIMCH1-211ENST00000509638 IFI44Q8TCB0 444 aa28.87■■■□□ 2.21
LIMCH1-211ENST00000509638 FOPNLQ96NB1 174 aa28.87■■■□□ 2.21
LIMCH1-211ENST00000509638 FERD3LQ96RJ6 166 aa28.87■■■□□ 2.21
LIMCH1-211ENST00000509638 SPTBN4Q9H254 2564 aa28.86■■■□□ 2.21
LIMCH1-211ENST00000509638 TCEA3O75764 348 aa28.86■■■□□ 2.21
LIMCH1-211ENST00000509638 MATN4O95460 622 aa28.86■■■□□ 2.21
LIMCH1-211ENST00000509638 SLC35E2BP0CK96 405 aa28.86■■■□□ 2.21
LIMCH1-211ENST00000509638 MPC1LP0DKB6 136 aa28.86■■■□□ 2.21
LIMCH1-211ENST00000509638 ACP1P24666 158 aa28.86■■■□□ 2.21
LIMCH1-211ENST00000509638 ACADVLP49748 655 aa28.86■■■□□ 2.21
LIMCH1-211ENST00000509638 GPR18Q14330 331 aa28.86■■■□□ 2.21
LIMCH1-211ENST00000509638 TRIP6Q15654 476 aaKnown RBP28.86■■■□□ 2.21
LIMCH1-211ENST00000509638 PERM1Q5SV97 790 aa28.86■■■□□ 2.21
LIMCH1-211ENST00000509638 ZNF438Q7Z4V0 828 aa28.86■■■□□ 2.21
LIMCH1-211ENST00000509638 MYO1HQ8N1T3 1032 aa28.86■■■□□ 2.21
LIMCH1-211ENST00000509638 OR5K2Q8NHB8 316 aa28.86■■■□□ 2.21
LIMCH1-211ENST00000509638 ANKRD49Q8WVL7 239 aa28.86■■■□□ 2.21
LIMCH1-211ENST00000509638 TRIT1Q9H3H1 467 aaKnown RBP28.86■■■□□ 2.21
LIMCH1-211ENST00000509638 MVB12BQ9H7P6 319 aa28.86■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms