RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 DRC3Q9H069 523 aa12.38□□□□□ -0.43
VPS52-220ENST00000493674 DUSP15Q9H1R2 295 aaPredicted RBP12.38□□□□□ -0.43
VPS52-220ENST00000493674 TM7SF3Q9NS93 570 aa12.38□□□□□ -0.43
VPS52-220ENST00000493674 FGFR1OP2Q9NVK5 253 aa12.38□□□□□ -0.43
VPS52-220ENST00000493674 THAP1Q9NVV9 213 aa12.38□□□□□ -0.43
VPS52-220ENST00000493674 SPATA6Q9NWH7 488 aaPredicted RBP12.38□□□□□ -0.43
VPS52-220ENST00000493674 NCKIPSDQ9NZQ3 722 aa12.38□□□□□ -0.43
VPS52-220ENST00000493674 PNMA8BQ9ULN7 279 aaPredicted RBP12.38□□□□□ -0.43
VPS52-220ENST00000493674 SUFUQ9UMX1 484 aa12.38□□□□□ -0.43
VPS52-220ENST00000493674 PDE10AQ9Y233 779 aa12.38□□□□□ -0.43
VPS52-220ENST00000493674 SUPT3HB4E1H0 165 aa12.37□□□□□ -0.43
VPS52-220ENST00000493674 FFAR2O15552 330 aa12.37□□□□□ -0.43
VPS52-220ENST00000493674 ITM2AO43736 263 aa12.37□□□□□ -0.43
VPS52-220ENST00000493674 SUPT3HO75486 399 aa12.37□□□□□ -0.43
VPS52-220ENST00000493674 SNUPNO95149 360 aaKnown RBP12.37□□□□□ -0.43
VPS52-220ENST00000493674 AP1S2P56377 157 aa12.37□□□□□ -0.43
VPS52-220ENST00000493674 NAA20P61599 178 aa12.37□□□□□ -0.43
VPS52-220ENST00000493674 RPL6Q02878 288 aaKnown RBP12.37□□□□□ -0.43
VPS52-220ENST00000493674 GALNT1Q10472 559 aaPredicted RBP12.37□□□□□ -0.43
VPS52-220ENST00000493674 PLA2G4EQ3MJ16 856 aa12.37□□□□□ -0.43
VPS52-220ENST00000493674 UNC50Q53HI1 259 aa12.37□□□□□ -0.43
VPS52-220ENST00000493674 ZNF678Q5SXM1 525 aa12.37□□□□□ -0.43
VPS52-220ENST00000493674 Q6ZSR6 202 aa12.37□□□□□ -0.43
VPS52-220ENST00000493674 FRMD7Q6ZUT3 714 aa12.37□□□□□ -0.43
VPS52-220ENST00000493674 IQCHQ86VS3 1027 aa12.37□□□□□ -0.43
VPS52-220ENST00000493674 GALNT13Q8IUC8 556 aa12.37□□□□□ -0.43
VPS52-220ENST00000493674 CFAP206Q8IYR0 622 aa12.37□□□□□ -0.43
VPS52-220ENST00000493674 LSMEM2Q8N112 164 aa12.37□□□□□ -0.43
VPS52-220ENST00000493674 FBXO39Q8N4B4 442 aa12.37□□□□□ -0.43
VPS52-220ENST00000493674 DNASE2BQ8WZ79 361 aa12.37□□□□□ -0.43
VPS52-220ENST00000493674 NELL1Q92832 810 aa12.37□□□□□ -0.43
VPS52-220ENST00000493674 RMDN2Q96LZ7 410 aa12.37□□□□□ -0.43
VPS52-220ENST00000493674 SLC6A18Q96N87 628 aa12.37□□□□□ -0.43
VPS52-220ENST00000493674 OR2M4Q96R27 311 aa12.37□□□□□ -0.43
VPS52-220ENST00000493674 CCT8L2Q96SF2 557 aa12.37□□□□□ -0.43
VPS52-220ENST00000493674 GSTO2Q9H4Y5 243 aa12.37□□□□□ -0.43
VPS52-220ENST00000493674 PARVBQ9HBI1 364 aa12.37□□□□□ -0.43
VPS52-220ENST00000493674 CYP4F12Q9HCS2 524 aa12.37□□□□□ -0.43
VPS52-220ENST00000493674 MRPL40Q9NQ50 206 aaKnown RBP12.37□□□□□ -0.43
VPS52-220ENST00000493674 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.37□□□□□ -0.43
VPS52-220ENST00000493674 TSR3Q9UJK0 312 aaKnown RBP12.37□□□□□ -0.43
VPS52-220ENST00000493674 PTBP2Q9UKA9 531 aaKnown RBP12.37□□□□□ -0.43
VPS52-220ENST00000493674 PRKAB1Q9Y478 270 aa12.37□□□□□ -0.43
VPS52-220ENST00000493674 ST14Q9Y5Y6 855 aa12.37□□□□□ -0.43
VPS52-220ENST00000493674 DGKBQ9Y6T7 804 aa12.37□□□□□ -0.43
VPS52-220ENST00000493674 SDK1Q7Z5N4 2213 aa12.37□□□□□ -0.43
VPS52-220ENST00000493674 ARID1BQ8NFD5 2236 aaPredicted RBP12.37□□□□□ -0.43
VPS52-220ENST00000493674 SPTY2D1-AS1A0A0U1RR47 76 aa12.36□□□□□ -0.43
VPS52-220ENST00000493674 ARHGEF33A8MVX0 844 aa12.36□□□□□ -0.43
VPS52-220ENST00000493674 H3BM21 787 aa12.36□□□□□ -0.43
VPS52-220ENST00000493674 TAPBPO15533 448 aa12.36□□□□□ -0.43
VPS52-220ENST00000493674 LYPLA1O75608 230 aaPredicted RBP12.36□□□□□ -0.43
VPS52-220ENST00000493674 TGDSO95455 350 aa12.36□□□□□ -0.43
VPS52-220ENST00000493674 VIMP08670 466 aaKnown RBP12.36□□□□□ -0.43
VPS52-220ENST00000493674 VCLP18206 1134 aa12.36□□□□□ -0.43
VPS52-220ENST00000493674 HTR1BP28222 390 aa12.36□□□□□ -0.43
VPS52-220ENST00000493674 GGT5P36269 586 aa12.36□□□□□ -0.43
VPS52-220ENST00000493674 SLC1A6P48664 564 aa12.36□□□□□ -0.43
VPS52-220ENST00000493674 NAGLUP54802 743 aa12.36□□□□□ -0.43
VPS52-220ENST00000493674 ABCE1P61221 599 aaKnown RBP12.36□□□□□ -0.43
VPS52-220ENST00000493674 PCBP2Q15366 365 aaKnown RBP eCLIP12.36□□□□□ -0.43
VPS52-220ENST00000493674 PFKFB4Q16877 469 aa12.36□□□□□ -0.43
VPS52-220ENST00000493674 ALG11Q2TAA5 492 aa12.36□□□□□ -0.43
VPS52-220ENST00000493674 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.36□□□□□ -0.43
VPS52-220ENST00000493674 CAPRIN2Q6IMN6 1127 aaKnown RBP12.36□□□□□ -0.43
VPS52-220ENST00000493674 METTL2BQ6P1Q9 378 aaKnown RBP12.36□□□□□ -0.43
VPS52-220ENST00000493674 UNC5DQ6UXZ4 953 aa12.36□□□□□ -0.43
VPS52-220ENST00000493674 FAM47EQ6ZV65 393 aa12.36□□□□□ -0.43
VPS52-220ENST00000493674 FRA10AC1Q70Z53 315 aa12.36□□□□□ -0.43
VPS52-220ENST00000493674 UBE2R2Q712K3 238 aaPredicted RBP12.36□□□□□ -0.43
VPS52-220ENST00000493674 PIGWQ7Z7B1 504 aa12.36□□□□□ -0.43
VPS52-220ENST00000493674 KLHDC8AQ8IYD2 350 aa12.36□□□□□ -0.43
VPS52-220ENST00000493674 MFSD2AQ8NA29 543 aa12.36□□□□□ -0.43
VPS52-220ENST00000493674 ZNF483Q8TF39 744 aaPredicted RBP12.36□□□□□ -0.43
VPS52-220ENST00000493674 EXT2Q93063 718 aa12.36□□□□□ -0.43
VPS52-220ENST00000493674 RHBDF1Q96CC6 855 aa12.36□□□□□ -0.43
VPS52-220ENST00000493674 CNDP1Q96KN2 507 aa12.36□□□□□ -0.43
VPS52-220ENST00000493674 TMEM79Q9BSE2 394 aa12.36□□□□□ -0.43
VPS52-220ENST00000493674 TRMOQ9BU70 441 aa12.36□□□□□ -0.43
VPS52-220ENST00000493674 ZDHHC5Q9C0B5 715 aa12.36□□□□□ -0.43
VPS52-220ENST00000493674 ZNF395Q9H8N7 513 aaPredicted RBP12.36□□□□□ -0.43
VPS52-220ENST00000493674 FAM8A1Q9UBU6 413 aa12.36□□□□□ -0.43
VPS52-220ENST00000493674 ZNHIT2Q9UHR6 403 aa12.36□□□□□ -0.43
VPS52-220ENST00000493674 ACSL5Q9ULC5 683 aa12.36□□□□□ -0.43
VPS52-220ENST00000493674 INVSQ9Y283 1065 aa12.36□□□□□ -0.43
VPS52-220ENST00000493674 VPS13AQ96RL7 3174 aa12.36□□□□□ -0.43
VPS52-220ENST00000493674 MYO1CO00159 1063 aa12.35□□□□□ -0.43
VPS52-220ENST00000493674 SIX3O95343 332 aaPredicted RBP12.35□□□□□ -0.43
VPS52-220ENST00000493674 WNT1P04628 370 aa12.35□□□□□ -0.43
VPS52-220ENST00000493674 THEGLP0DJG4 465 aa12.35□□□□□ -0.43
VPS52-220ENST00000493674 NEFHP12036 1026 aa12.35□□□□□ -0.43
VPS52-220ENST00000493674 ACP5P13686 325 aa12.35□□□□□ -0.43
VPS52-220ENST00000493674 GFAPP14136 432 aa12.35□□□□□ -0.43
VPS52-220ENST00000493674 CYP2A7P20853 494 aa12.35□□□□□ -0.43
VPS52-220ENST00000493674 GNPDA1P46926 289 aa12.35□□□□□ -0.43
VPS52-220ENST00000493674 FNTBP49356 437 aa12.35□□□□□ -0.43
VPS52-220ENST00000493674 AGTR2P50052 363 aa12.35□□□□□ -0.43
VPS52-220ENST00000493674 THOP1P52888 689 aa12.35□□□□□ -0.43
VPS52-220ENST00000493674 SRP54P61011 504 aaKnown RBP12.35□□□□□ -0.43
VPS52-220ENST00000493674 RACK1P63244 317 aaKnown RBP12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms