RNA–Protein interactions for RNA: ENST00000491581.5

HDAC3-211, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 777 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-211ENST00000491581 TMEM126BQ8IUX1 230 aa8.65□□□□□ -1.02
HDAC3-211ENST00000491581 KLHDC8BQ8IXV7 354 aa8.65□□□□□ -1.02
HDAC3-211ENST00000491581 ADGRF3Q8IZF5 1079 aa8.65□□□□□ -1.02
HDAC3-211ENST00000491581 KRT222Q8N1A0 295 aa8.65□□□□□ -1.02
HDAC3-211ENST00000491581 D2HGDHQ8N465 521 aa8.65□□□□□ -1.02
HDAC3-211ENST00000491581 SLC35B2Q8TB61 432 aa8.65□□□□□ -1.02
HDAC3-211ENST00000491581 APOBEC4Q8WW27 367 aaKnown RBP8.65□□□□□ -1.02
HDAC3-211ENST00000491581 MR1Q95460 341 aa8.65□□□□□ -1.02
HDAC3-211ENST00000491581 CDKN2AIPNLQ96HQ2 116 aa8.65□□□□□ -1.02
HDAC3-211ENST00000491581 MRFAP1L1Q96HT8 127 aa8.65□□□□□ -1.02
HDAC3-211ENST00000491581 COPS8Q99627 209 aa8.65□□□□□ -1.02
HDAC3-211ENST00000491581 BAG1Q99933 345 aaPredicted RBP8.65□□□□□ -1.02
HDAC3-211ENST00000491581 MESP1Q9BRJ9 268 aa8.65□□□□□ -1.02
HDAC3-211ENST00000491581 TRIM56Q9BRZ2 755 aaKnown RBP8.65□□□□□ -1.02
HDAC3-211ENST00000491581 ZPBPQ9BS86 351 aa8.65□□□□□ -1.02
HDAC3-211ENST00000491581 ZCCHC2Q9C0B9 1178 aaKnown RBP8.65□□□□□ -1.02
HDAC3-211ENST00000491581 RAB33BQ9H082 229 aa8.65□□□□□ -1.02
HDAC3-211ENST00000491581 ETNK1Q9HBU6 452 aa8.65□□□□□ -1.02
HDAC3-211ENST00000491581 NLE1Q9NVX2 485 aaPredicted RBP8.65□□□□□ -1.02
HDAC3-211ENST00000491581 ZDHHC3Q9NYG2 299 aa8.65□□□□□ -1.02
HDAC3-211ENST00000491581 SMARCAL1Q9NZC9 954 aa8.65□□□□□ -1.02
HDAC3-211ENST00000491581 SEMA5BQ9P283 1151 aa8.65□□□□□ -1.02
HDAC3-211ENST00000491581 MARCH4Q9P2E8 410 aaPredicted RBP8.65□□□□□ -1.02
HDAC3-211ENST00000491581 AMFRQ9UKV5 643 aa8.65□□□□□ -1.02
HDAC3-211ENST00000491581 PADI1Q9ULC6 663 aa8.65□□□□□ -1.02
HDAC3-211ENST00000491581 RUVBL2Q9Y230 463 aaKnown RBP8.65□□□□□ -1.02
HDAC3-211ENST00000491581 AAR2Q9Y312 384 aaKnown RBP8.65□□□□□ -1.02
HDAC3-211ENST00000491581 IGLV3-16A0A075B6K0 115 aa8.64□□□□□ -1.03
HDAC3-211ENST00000491581 TRBV5-4A0A0C4DH59 114 aa8.64□□□□□ -1.03
HDAC3-211ENST00000491581 GOLGA6L3A6NEY3 463 aa8.64□□□□□ -1.03
HDAC3-211ENST00000491581 TLCD2A6NGC4 264 aa8.64□□□□□ -1.03
HDAC3-211ENST00000491581 A6NL46 340 aa8.64□□□□□ -1.03
HDAC3-211ENST00000491581 TMEM150CB9EJG8 249 aa8.64□□□□□ -1.03
HDAC3-211ENST00000491581 BHMG1C9JSJ3 638 aaPredicted RBP8.64□□□□□ -1.03
HDAC3-211ENST00000491581 TOX3O15405 576 aaPredicted RBP8.64□□□□□ -1.03
HDAC3-211ENST00000491581 ALOX12BO75342 701 aa8.64□□□□□ -1.03
HDAC3-211ENST00000491581 TJP3O95049 919 aa8.64□□□□□ -1.03
HDAC3-211ENST00000491581 CRTAMO95727 393 aa8.64□□□□□ -1.03
HDAC3-211ENST00000491581 CAPN1P07384 714 aa8.64□□□□□ -1.03
HDAC3-211ENST00000491581 RNF224P0DH78 156 aa8.64□□□□□ -1.03
HDAC3-211ENST00000491581 ITGALP20701 1170 aa8.64□□□□□ -1.03
HDAC3-211ENST00000491581 CDH3P22223 829 aa8.64□□□□□ -1.03
HDAC3-211ENST00000491581 PRDX3P30048 256 aaKnown RBP8.64□□□□□ -1.03
HDAC3-211ENST00000491581 FOXN2P32314 431 aa8.64□□□□□ -1.03
HDAC3-211ENST00000491581 ARL4DP49703 201 aa8.64□□□□□ -1.03
HDAC3-211ENST00000491581 CCL11P51671 97 aa8.64□□□□□ -1.03
HDAC3-211ENST00000491581 ITGA1P56199 1179 aa8.64□□□□□ -1.03
HDAC3-211ENST00000491581 YBX1P67809 324 aaKnown RBP8.64□□□□□ -1.03
HDAC3-211ENST00000491581 HSD11B2P80365 405 aa8.64□□□□□ -1.03
HDAC3-211ENST00000491581 BOP1Q14137 746 aaKnown RBP8.64□□□□□ -1.03
HDAC3-211ENST00000491581 MAP7Q14244 749 aa8.64□□□□□ -1.03
HDAC3-211ENST00000491581 KRT33BQ14525 404 aa8.64□□□□□ -1.03
HDAC3-211ENST00000491581 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.64□□□□□ -1.03
HDAC3-211ENST00000491581 LACTB2Q53H82 288 aaPredicted RBP8.64□□□□□ -1.03
HDAC3-211ENST00000491581 PLEKHS1Q5SXH7 462 aa8.64□□□□□ -1.03
HDAC3-211ENST00000491581 CDHR3Q6ZTQ4 885 aa8.64□□□□□ -1.03
HDAC3-211ENST00000491581 ZNF534Q76KX8 674 aa8.64□□□□□ -1.03
HDAC3-211ENST00000491581 OOSP2Q86WS3 158 aa8.64□□□□□ -1.03
HDAC3-211ENST00000491581 ENDOVQ8N8Q3 282 aaKnown RBP8.64□□□□□ -1.03
HDAC3-211ENST00000491581 OR13J1Q8NGT2 312 aa8.64□□□□□ -1.03
HDAC3-211ENST00000491581 FLVCR1-AS1Q8TAF5 88 aa8.64□□□□□ -1.03
HDAC3-211ENST00000491581 HM13Q8TCT9 377 aa8.64□□□□□ -1.03
HDAC3-211ENST00000491581 DTX3LQ8TDB6 740 aa8.64□□□□□ -1.03
HDAC3-211ENST00000491581 LCN9Q8WX39 176 aa8.64□□□□□ -1.03
HDAC3-211ENST00000491581 UBXN4Q92575 508 aa8.64□□□□□ -1.03
HDAC3-211ENST00000491581 DCUN1D1Q96GG9 259 aa8.64□□□□□ -1.03
HDAC3-211ENST00000491581 LINC00615Q96LM1 132 aaPredicted RBP8.64□□□□□ -1.03
HDAC3-211ENST00000491581 IL17FQ96PD4 163 aa8.64□□□□□ -1.03
HDAC3-211ENST00000491581 SRPK1Q96SB4 655 aaKnown RBP8.64□□□□□ -1.03
HDAC3-211ENST00000491581 CCM2Q9BSQ5 444 aa8.64□□□□□ -1.03
HDAC3-211ENST00000491581 MFRPQ9BY79 579 aa8.64□□□□□ -1.03
HDAC3-211ENST00000491581 SPRTNQ9H040 489 aaPredicted RBP8.64□□□□□ -1.03
HDAC3-211ENST00000491581 ADNPQ9H2P0 1102 aa8.64□□□□□ -1.03
HDAC3-211ENST00000491581 SRMSQ9H3Y6 488 aa8.64□□□□□ -1.03
HDAC3-211ENST00000491581 ARNT2Q9HBZ2 717 aa8.64□□□□□ -1.03
HDAC3-211ENST00000491581 PDE7BQ9NP56 450 aa8.64□□□□□ -1.03
HDAC3-211ENST00000491581 PCMTD2Q9NV79 361 aa8.64□□□□□ -1.03
HDAC3-211ENST00000491581 POMT2Q9UKY4 750 aa8.64□□□□□ -1.03
HDAC3-211ENST00000491581 MAN2B2Q9Y2E5 1009 aa8.64□□□□□ -1.03
HDAC3-211ENST00000491581 TDRKHQ9Y2W6 561 aaKnown RBP8.64□□□□□ -1.03
HDAC3-211ENST00000491581 ASH1LQ9NR48 2969 aaKnown RBP8.63□□□□□ -1.03
HDAC3-211ENST00000491581 BTNL10A8MVZ5 291 aa8.63□□□□□ -1.03
HDAC3-211ENST00000491581 CNOT3O75175 753 aaKnown RBP8.63□□□□□ -1.03
HDAC3-211ENST00000491581 AP2A1O95782 977 aa8.63□□□□□ -1.03
HDAC3-211ENST00000491581 GOT2P00505 430 aaKnown RBP8.63□□□□□ -1.03
HDAC3-211ENST00000491581 IFNB1P01574 187 aa8.63□□□□□ -1.03
HDAC3-211ENST00000491581 PTMAP06454 111 aaKnown RBP8.63□□□□□ -1.03
HDAC3-211ENST00000491581 CCNYL3P0C7X3 344 aa8.63□□□□□ -1.03
HDAC3-211ENST00000491581 CBSLP0DN79 551 aa8.63□□□□□ -1.03
HDAC3-211ENST00000491581 MSNP26038 577 aaKnown RBP8.63□□□□□ -1.03
HDAC3-211ENST00000491581 PTPN4P29074 926 aa8.63□□□□□ -1.03
HDAC3-211ENST00000491581 CBSP35520 551 aa8.63□□□□□ -1.03
HDAC3-211ENST00000491581 CASRP41180 1078 aa8.63□□□□□ -1.03
HDAC3-211ENST00000491581 FOXK1P85037 733 aa8.63□□□□□ -1.03
HDAC3-211ENST00000491581 SIX1Q15475 284 aaPredicted RBP8.63□□□□□ -1.03
HDAC3-211ENST00000491581 OASLQ15646 514 aaKnown RBP8.63□□□□□ -1.03
HDAC3-211ENST00000491581 PARP6Q2NL67 630 aa8.63□□□□□ -1.03
HDAC3-211ENST00000491581 CCSMST1Q4G0I0 132 aa8.63□□□□□ -1.03
HDAC3-211ENST00000491581 ZDHHC20Q5W0Z9 365 aa8.63□□□□□ -1.03
HDAC3-211ENST00000491581 ARMC6Q6NXE6 501 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms