RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 CCDC74BQ96LY2 380 aa8.6□□□□□ -1.03
USP4-213ENST00000488520 TAAR9Q96RI9 348 aa8.6□□□□□ -1.03
USP4-213ENST00000488520 MCCC1Q96RQ3 725 aaPredicted RBP8.6□□□□□ -1.03
USP4-213ENST00000488520 LYSMD1Q96S90 227 aa8.6□□□□□ -1.03
USP4-213ENST00000488520 LGR4Q9BXB1 951 aa8.6□□□□□ -1.03
USP4-213ENST00000488520 CASS4Q9NQ75 786 aa8.6□□□□□ -1.03
USP4-213ENST00000488520 SPATS2LQ9NUQ6 558 aaKnown RBP8.6□□□□□ -1.03
USP4-213ENST00000488520 NEU2Q9Y3R4 380 aa8.6□□□□□ -1.03
USP4-213ENST00000488520 ZNF711Q9Y462 761 aa8.6□□□□□ -1.03
USP4-213ENST00000488520 B3GALT1Q9Y5Z6 326 aa8.6□□□□□ -1.03
USP4-213ENST00000488520 MAD1L1Q9Y6D9 718 aa8.6□□□□□ -1.03
USP4-213ENST00000488520 DGKBQ9Y6T7 804 aa8.6□□□□□ -1.03
USP4-213ENST00000488520 IGHV5-10-1A0A0J9YXX1 117 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 RHPN2P1A8MT19 583 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 PFDN6O15212 129 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 NUDT21O43809 227 aaKnown RBP8.59□□□□□ -1.03
USP4-213ENST00000488520 RHOXF2BP0C7M4 288 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 PRKAR1AP10644 381 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 MCM3P25205 808 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 AK4P27144 223 aaPredicted RBP8.59□□□□□ -1.03
USP4-213ENST00000488520 UGT1A3P35503 534 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 HMGCLP35914 325 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 ETV3P41162 512 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 GPR1P46091 355 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 SPINT3P49223 89 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 PPM1FP49593 454 aaPredicted RBP8.59□□□□□ -1.03
USP4-213ENST00000488520 TMPRSS15P98073 1019 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 BIRC2Q13490 618 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 OLIG2Q13516 323 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 IHHQ14623 411 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 KCNJ11Q14654 390 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 CNGA3Q16281 694 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 TEX35Q5T0J7 233 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 ARMC3Q5W041 872 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 DUPD1Q68J44 220 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 RAET1GQ6H3X3 334 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 Q6ZVL8 140 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 CENPUQ71F23 418 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 TSPAN33Q86UF1 283 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 KLHDC8BQ8IXV7 354 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 CACNA2D3Q8IZS8 1091 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 PELI3Q8N2H9 469 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 NAT8LQ8N9F0 302 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 OR4K2Q8NGD2 314 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 GDAP1Q8TB36 358 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 PATE1Q8WXA2 126 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 ART4Q93070 314 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 TBRG4Q969Z0 631 aaKnown RBP eCLIP8.59□□□□□ -1.03
USP4-213ENST00000488520 AP2M1Q96CW1 435 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 TTC25Q96NG3 672 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 RHOXF2Q9BQY4 288 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 NAT9Q9BTE0 207 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 SPATA16Q9BXB7 569 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 L2HGDHQ9H9P8 463 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 BPIFA1Q9NP55 256 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 PIH1D1Q9NWS0 290 aaKnown RBP8.59□□□□□ -1.03
USP4-213ENST00000488520 TRIM33Q9UPN9 1127 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 PLAAQ9Y263 795 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 MAN2B2Q9Y2E5 1009 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 SLC30A1Q9Y6M5 507 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 CRYBG3Q68DQ2 2970 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 SPTBP11277 2137 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 CREBBPQ92793 2442 aa8.59□□□□□ -1.03
USP4-213ENST00000488520 TCRBV7S3A2A0A539 114 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 PRSS38A1L453 326 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 BLACEA4D250 179 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 IQCJ-SCHIP1C9J366 451 aaPredicted RBP8.58□□□□□ -1.04
USP4-213ENST00000488520 NKX2-8O15522 239 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 BUD23O43709 281 aaKnown RBP8.58□□□□□ -1.04
USP4-213ENST00000488520 DUX1O43812 170 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 AVILO75366 819 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 SMNDC1O75940 238 aaKnown RBP eCLIP8.58□□□□□ -1.04
USP4-213ENST00000488520 SEC31AO94979 1220 aaKnown RBP8.58□□□□□ -1.04
USP4-213ENST00000488520 ASMTLO95671 621 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 POLBP06746 335 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 KELP23276 732 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 MGAT1P26572 445 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 CD1CP29017 333 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 SPAM1P38567 509 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 CASRP41180 1078 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 GRIA1P42261 906 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 MAGEA6P43360 314 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 RPL21P46778 160 aaKnown RBP8.58□□□□□ -1.04
USP4-213ENST00000488520 STC1P52823 247 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 KIAA1024LP59773 190 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 PRAMEP78395 509 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 THOC5Q13769 683 aaKnown RBP8.58□□□□□ -1.04
USP4-213ENST00000488520 ITGA9Q13797 1035 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 PTPRRQ15256 657 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 BBS9Q3SYG4 887 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 RNASEH2BQ5TBB1 312 aaKnown RBP8.58□□□□□ -1.04
USP4-213ENST00000488520 DENND5AQ6IQ26 1287 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 HIBCHQ6NVY1 386 aaPredicted RBP8.58□□□□□ -1.04
USP4-213ENST00000488520 PNCKQ6P2M8 343 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 ZNF765Q7L2R6 523 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 TAS2R42Q7RTR8 314 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 HSD11B1LQ7Z5J1 315 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 SDCCAG8Q86SQ7 713 aaPredicted RBP8.58□□□□□ -1.04
USP4-213ENST00000488520 CCDC25Q86WR0 208 aa8.58□□□□□ -1.04
USP4-213ENST00000488520 FAM129CQ86XR2 697 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms