RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 KIR3DX1Q9H7L2 352 aa14.39□□□□□ -0.11
USP4-212ENST00000486549 IARS2Q9NSE4 1012 aaKnown RBP14.39□□□□□ -0.11
USP4-212ENST00000486549 ZC3H7BQ9UGR2 993 aaKnown RBP14.39□□□□□ -0.11
USP4-212ENST00000486549 SLC24A2Q9UI40 661 aa14.39□□□□□ -0.11
USP4-212ENST00000486549 UTP11Q9Y3A2 253 aaKnown RBP14.39□□□□□ -0.11
USP4-212ENST00000486549 PCDHGA8Q9Y5G5 932 aa14.39□□□□□ -0.11
USP4-212ENST00000486549 BHMG1C9JSJ3 638 aaPredicted RBP14.38□□□□□ -0.11
USP4-212ENST00000486549 TP73O15350 636 aa14.38□□□□□ -0.11
USP4-212ENST00000486549 CAPN5O15484 640 aaPredicted RBP14.38□□□□□ -0.11
USP4-212ENST00000486549 NIPSNAP2O75323 286 aa14.38□□□□□ -0.11
USP4-212ENST00000486549 DXOO77932 396 aaKnown RBP14.38□□□□□ -0.11
USP4-212ENST00000486549 TTC4O95801 387 aa14.38□□□□□ -0.11
USP4-212ENST00000486549 APOA4P06727 396 aa14.38□□□□□ -0.11
USP4-212ENST00000486549 ERVK-10P10266 1014 aa14.38□□□□□ -0.11
USP4-212ENST00000486549 NDUFS1P28331 727 aa14.38□□□□□ -0.11
USP4-212ENST00000486549 CSTF2P33240 577 aaKnown RBP eCLIP14.38□□□□□ -0.11
USP4-212ENST00000486549 MLLT3P42568 568 aaPredicted RBP14.38□□□□□ -0.11
USP4-212ENST00000486549 LEPRP48357 1165 aaKnown RBP14.38□□□□□ -0.11
USP4-212ENST00000486549 PPP1CAP62136 330 aa14.38□□□□□ -0.11
USP4-212ENST00000486549 MPP1Q00013 466 aa14.38□□□□□ -0.11
USP4-212ENST00000486549 PLOD1Q02809 727 aaPredicted RBP14.38□□□□□ -0.11
USP4-212ENST00000486549 PDIA2Q13087 525 aaKnown RBP14.38□□□□□ -0.11
USP4-212ENST00000486549 PRKG2Q13237 762 aa14.38□□□□□ -0.11
USP4-212ENST00000486549 TRA2AQ13595 282 aaKnown RBP eCLIP14.38□□□□□ -0.11
USP4-212ENST00000486549 TBC1D25Q3MII6 688 aa14.38□□□□□ -0.11
USP4-212ENST00000486549 C8orf74Q6P047 294 aa14.38□□□□□ -0.11
USP4-212ENST00000486549 UNC5AQ6ZN44 842 aa14.38□□□□□ -0.11
USP4-212ENST00000486549 FAM92BQ6ZTR7 304 aa14.38□□□□□ -0.11
USP4-212ENST00000486549 PLXDC1Q8IUK5 500 aa14.38□□□□□ -0.11
USP4-212ENST00000486549 VRK3Q8IV63 474 aa14.38□□□□□ -0.11
USP4-212ENST00000486549 CALML6Q8TD86 181 aa14.38□□□□□ -0.11
USP4-212ENST00000486549 HNRNPLLQ8WVV9 542 aaKnown RBP14.38□□□□□ -0.11
USP4-212ENST00000486549 ASZ1Q8WWH4 475 aa14.38□□□□□ -0.11
USP4-212ENST00000486549 PRR11Q96HE9 360 aaPredicted RBP14.38□□□□□ -0.11
USP4-212ENST00000486549 BIRC8Q96P09 236 aa14.38□□□□□ -0.11
USP4-212ENST00000486549 DCBLD2Q96PD2 775 aa14.38□□□□□ -0.11
USP4-212ENST00000486549 WDR83Q9BRX9 315 aaKnown RBP14.38□□□□□ -0.11
USP4-212ENST00000486549 NAT9Q9BTE0 207 aa14.38□□□□□ -0.11
USP4-212ENST00000486549 RAB17Q9H0T7 212 aa14.38□□□□□ -0.11
USP4-212ENST00000486549 MVB12BQ9H7P6 319 aa14.38□□□□□ -0.11
USP4-212ENST00000486549 PPANQ9NQ55 473 aaKnown RBP14.38□□□□□ -0.11
USP4-212ENST00000486549 THSD1Q9NS62 852 aa14.38□□□□□ -0.11
USP4-212ENST00000486549 INTS10Q9NVR2 710 aaKnown RBP14.38□□□□□ -0.11
USP4-212ENST00000486549 WHRNQ9P202 907 aa14.38□□□□□ -0.11
USP4-212ENST00000486549 TSR3Q9UJK0 312 aaKnown RBP14.38□□□□□ -0.11
USP4-212ENST00000486549 ASF1AQ9Y294 204 aa14.38□□□□□ -0.11
USP4-212ENST00000486549 VPS9D1Q9Y2B5 631 aa14.38□□□□□ -0.11
USP4-212ENST00000486549 MRFAP1Q9Y605 127 aa14.38□□□□□ -0.11
USP4-212ENST00000486549 MN1Q10571 1320 aaPredicted RBP14.38□□□□□ -0.11
USP4-212ENST00000486549 URB1O60287 2271 aaKnown RBP14.38□□□□□ -0.11
USP4-212ENST00000486549 E5RI56 91 aa14.37□□□□□ -0.11
USP4-212ENST00000486549 HGSO14964 777 aaPredicted RBP14.37□□□□□ -0.11
USP4-212ENST00000486549 TLX3O43711 291 aaPredicted RBP14.37□□□□□ -0.11
USP4-212ENST00000486549 RASSF9O75901 435 aa14.37□□□□□ -0.11
USP4-212ENST00000486549 S1PR4O95977 384 aa14.37□□□□□ -0.11
USP4-212ENST00000486549 ESR1P03372 595 aa14.37□□□□□ -0.11
USP4-212ENST00000486549 TUBB4AP04350 444 aa14.37□□□□□ -0.11
USP4-212ENST00000486549 CCL4P13236 92 aa14.37□□□□□ -0.11
USP4-212ENST00000486549 PKMP14618 531 aaKnown RBP14.37□□□□□ -0.11
USP4-212ENST00000486549 AOAHP28039 575 aa14.37□□□□□ -0.11
USP4-212ENST00000486549 EIF2S3P41091 472 aaKnown RBP14.37□□□□□ -0.11
USP4-212ENST00000486549 ETV5P41161 510 aa14.37□□□□□ -0.11
USP4-212ENST00000486549 SLC7A5Q01650 507 aa14.37□□□□□ -0.11
USP4-212ENST00000486549 FASTKD3Q14CZ7 662 aaKnown RBP14.37□□□□□ -0.11
USP4-212ENST00000486549 COL28A1Q2UY09 1125 aa14.37□□□□□ -0.11
USP4-212ENST00000486549 DUPD1Q68J44 220 aa14.37□□□□□ -0.11
USP4-212ENST00000486549 KLHL35Q6PF15 583 aa14.37□□□□□ -0.11
USP4-212ENST00000486549 C19orf48Q6RUI8 117 aa14.37□□□□□ -0.11
USP4-212ENST00000486549 IGF2-ASQ6U949 168 aa14.37□□□□□ -0.11
USP4-212ENST00000486549 OTOAQ7RTW8 1153 aa14.37□□□□□ -0.11
USP4-212ENST00000486549 OOSP2Q86WS3 158 aa14.37□□□□□ -0.11
USP4-212ENST00000486549 FAM129CQ86XR2 697 aa14.37□□□□□ -0.11
USP4-212ENST00000486549 LMNTD2Q8IXW0 634 aa14.37□□□□□ -0.11
USP4-212ENST00000486549 SLC22A15Q8IZD6 547 aa14.37□□□□□ -0.11
USP4-212ENST00000486549 AGBL5Q8NDL9 886 aa14.37□□□□□ -0.11
USP4-212ENST00000486549 FBXO36Q8NEA4 188 aa14.37□□□□□ -0.11
USP4-212ENST00000486549 ACVR1CQ8NER5 493 aa14.37□□□□□ -0.11
USP4-212ENST00000486549 OR4E2Q8NGC2 313 aa14.37□□□□□ -0.11
USP4-212ENST00000486549 OR52E1Q8NGJ3 308 aa14.37□□□□□ -0.11
USP4-212ENST00000486549 OR5AR1Q8NGP9 310 aa14.37□□□□□ -0.11
USP4-212ENST00000486549 CFAP61Q8NHU2 1237 aa14.37□□□□□ -0.11
USP4-212ENST00000486549 KIF18AQ8NI77 898 aa14.37□□□□□ -0.11
USP4-212ENST00000486549 GSDMBQ8TAX9 411 aa14.37□□□□□ -0.11
USP4-212ENST00000486549 SKA2Q8WVK7 121 aaPredicted RBP14.37□□□□□ -0.11
USP4-212ENST00000486549 LCN9Q8WX39 176 aa14.37□□□□□ -0.11
USP4-212ENST00000486549 SLC46A1Q96NT5 459 aa14.37□□□□□ -0.11
USP4-212ENST00000486549 NRTNQ99748 197 aa14.37□□□□□ -0.11
USP4-212ENST00000486549 CCDC68Q9H2F9 335 aa14.37□□□□□ -0.11
USP4-212ENST00000486549 ASCL3Q9NQ33 180 aa14.37□□□□□ -0.11
USP4-212ENST00000486549 GRHL1Q9NZI5 618 aa14.37□□□□□ -0.11
USP4-212ENST00000486549 SLC17A6Q9P2U8 582 aa14.37□□□□□ -0.11
USP4-212ENST00000486549 FBXO5Q9UKT4 447 aa14.37□□□□□ -0.11
USP4-212ENST00000486549 TDRKHQ9Y2W6 561 aaKnown RBP14.37□□□□□ -0.11
USP4-212ENST00000486549 TEX264Q9Y6I9 313 aa14.37□□□□□ -0.11
USP4-212ENST00000486549 OR6C74A6NCV1 312 aa14.36□□□□□ -0.11
USP4-212ENST00000486549 OR5K3A6NET4 321 aa14.36□□□□□ -0.11
USP4-212ENST00000486549 EFCAB7A8K855 629 aa14.36□□□□□ -0.11
USP4-212ENST00000486549 H3BMM5 538 aa14.36□□□□□ -0.11
USP4-212ENST00000486549 KIF1CO43896 1103 aaKnown RBP14.36□□□□□ -0.11
USP4-212ENST00000486549 C9P02748 559 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms