RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 SFRP1Q8N474 314 aa16.71■□□□□ 0.27
VIM-205ENST00000485947 FBXO39Q8N4B4 442 aa16.71■□□□□ 0.27
VIM-205ENST00000485947 OTUD6BQ8N6M0 293 aa16.71■□□□□ 0.27
VIM-205ENST00000485947 Q8N9G6 341 aaPredicted RBP16.71■□□□□ 0.27
VIM-205ENST00000485947 GPR26Q8NDV2 337 aa16.71■□□□□ 0.27
VIM-205ENST00000485947 GLYATL1Q969I3 302 aa16.71■□□□□ 0.27
VIM-205ENST00000485947 TCF12Q99081 682 aa16.71■□□□□ 0.27
VIM-205ENST00000485947 RHOJQ9H4E5 214 aa16.71■□□□□ 0.27
VIM-205ENST00000485947 UGT1A7Q9HAW7 530 aa16.71■□□□□ 0.27
VIM-205ENST00000485947 UGT1A10Q9HAW8 530 aa16.71■□□□□ 0.27
VIM-205ENST00000485947 UGT1A8Q9HAW9 530 aa16.71■□□□□ 0.27
VIM-205ENST00000485947 BPIFA1Q9NP55 256 aa16.71■□□□□ 0.27
VIM-205ENST00000485947 SARS2Q9NP81 518 aaKnown RBP16.71■□□□□ 0.27
VIM-205ENST00000485947 CORO1CQ9ULV4 474 aaPredicted RBP16.71■□□□□ 0.27
VIM-205ENST00000485947 NOVA2Q9UNW9 492 aaKnown RBP16.71■□□□□ 0.27
VIM-205ENST00000485947 VPS9D1Q9Y2B5 631 aa16.71■□□□□ 0.27
VIM-205ENST00000485947 SSUH2Q9Y2M2 353 aa16.71■□□□□ 0.27
VIM-205ENST00000485947 PSAT1Q9Y617 370 aa16.71■□□□□ 0.27
VIM-205ENST00000485947 COL27A1Q8IZC6 1860 aaPredicted RBP16.71■□□□□ 0.27
VIM-205ENST00000485947 KIR2DS5A0A0G2JLQ3 304 aa16.7■□□□□ 0.26
VIM-205ENST00000485947 A0A0G2JNG1 304 aa16.7■□□□□ 0.26
VIM-205ENST00000485947 GLYATL1P3A0A0U1RQE8 302 aa16.7■□□□□ 0.26
VIM-205ENST00000485947 A0A1W2PNU3 283 aaPredicted RBP16.7■□□□□ 0.26
VIM-205ENST00000485947 GOLGA8TH3BQL2 631 aa16.7■□□□□ 0.26
VIM-205ENST00000485947 KIR2DS3K7RE56 304 aa16.7■□□□□ 0.26
VIM-205ENST00000485947 CCL22O00626 93 aa16.7■□□□□ 0.26
VIM-205ENST00000485947 CHUKO15111 745 aa16.7■□□□□ 0.26
VIM-205ENST00000485947 GRID2O43424 1007 aa16.7■□□□□ 0.26
VIM-205ENST00000485947 B4GAT1O43505 415 aa16.7■□□□□ 0.26
VIM-205ENST00000485947 KCNJ13O60928 360 aa16.7■□□□□ 0.26
VIM-205ENST00000485947 FAM155BO75949 473 aa16.7■□□□□ 0.26
VIM-205ENST00000485947 TNFSF15O95150 251 aa16.7■□□□□ 0.26
VIM-205ENST00000485947 ITGALP20701 1170 aa16.7■□□□□ 0.26
VIM-205ENST00000485947 PPARGP37231 505 aaPredicted RBP16.7■□□□□ 0.26
VIM-205ENST00000485947 LEPRP48357 1165 aaKnown RBP16.7■□□□□ 0.26
VIM-205ENST00000485947 CD151P48509 253 aa16.7■□□□□ 0.26
VIM-205ENST00000485947 TLE3Q04726 772 aa16.7■□□□□ 0.26
VIM-205ENST00000485947 KIR2DS5Q14953 304 aa16.7■□□□□ 0.26
VIM-205ENST00000485947 GPR33Q49SQ1 333 aa16.7■□□□□ 0.26
VIM-205ENST00000485947 RNF187Q5TA31 235 aaPredicted RBP16.7■□□□□ 0.26
VIM-205ENST00000485947 CERS6Q6ZMG9 384 aa16.7■□□□□ 0.26
VIM-205ENST00000485947 TRIM74Q86UV6 250 aa16.7■□□□□ 0.26
VIM-205ENST00000485947 TRABD2AQ86V40 505 aa16.7■□□□□ 0.26
VIM-205ENST00000485947 SLITRK4Q8IW52 837 aa16.7■□□□□ 0.26
VIM-205ENST00000485947 DENND6AQ8IWF6 608 aa16.7■□□□□ 0.26
VIM-205ENST00000485947 SPACA3Q8IXA5 215 aa16.7■□□□□ 0.26
VIM-205ENST00000485947 CYP4X1Q8N118 509 aa16.7■□□□□ 0.26
VIM-205ENST00000485947 KRT222Q8N1A0 295 aa16.7■□□□□ 0.26
VIM-205ENST00000485947 LSM14AQ8ND56 463 aaKnown RBP16.7■□□□□ 0.26
VIM-205ENST00000485947 MZB1Q8WU39 189 aa16.7■□□□□ 0.26
VIM-205ENST00000485947 KCNE4Q8WWG9 221 aa16.7■□□□□ 0.26
VIM-205ENST00000485947 MCMBPQ9BTE3 642 aa16.7■□□□□ 0.26
VIM-205ENST00000485947 LDHAL6BQ9BYZ2 381 aaPredicted RBP16.7■□□□□ 0.26
VIM-205ENST00000485947 EPB41L1Q9H4G0 881 aa16.7■□□□□ 0.26
VIM-205ENST00000485947 PRORYQ9H606 182 aa16.7■□□□□ 0.26
VIM-205ENST00000485947 SUDS3Q9H7L9 328 aaPredicted RBP16.7■□□□□ 0.26
VIM-205ENST00000485947 INTS10Q9NVR2 710 aaKnown RBP16.7■□□□□ 0.26
VIM-205ENST00000485947 SLC17A6Q9P2U8 582 aa16.7■□□□□ 0.26
VIM-205ENST00000485947 OAS3Q9Y6K5 1087 aaKnown RBP16.7■□□□□ 0.26
VIM-205ENST00000485947 ARHGEF17Q96PE2 2063 aaPredicted RBP16.69■□□□□ 0.26
VIM-205ENST00000485947 OR51F1A6NGY5 319 aa16.69■□□□□ 0.26
VIM-205ENST00000485947 NVLO15381 856 aaKnown RBP16.69■□□□□ 0.26
VIM-205ENST00000485947 SRP72O76094 671 aaKnown RBP16.69■□□□□ 0.26
VIM-205ENST00000485947 OAS2P29728 719 aaKnown RBP16.69■□□□□ 0.26
VIM-205ENST00000485947 ALDH4A1P30038 563 aa16.69■□□□□ 0.26
VIM-205ENST00000485947 UGT1A5P35504 534 aa16.69■□□□□ 0.26
VIM-205ENST00000485947 TTPAP49638 278 aa16.69■□□□□ 0.26
VIM-205ENST00000485947 MAZP56270 477 aaKnown RBP16.69■□□□□ 0.26
VIM-205ENST00000485947 CTBP1Q13363 440 aa16.69■□□□□ 0.26
VIM-205ENST00000485947 ITGA9Q13797 1035 aa16.69■□□□□ 0.26
VIM-205ENST00000485947 ZRANB3Q5FWF4 1079 aa16.69■□□□□ 0.26
VIM-205ENST00000485947 LYPLAL1Q5VWZ2 237 aa16.69■□□□□ 0.26
VIM-205ENST00000485947 IYDQ6PHW0 289 aa16.69■□□□□ 0.26
VIM-205ENST00000485947 TIFABQ6ZNK6 161 aa16.69■□□□□ 0.26
VIM-205ENST00000485947 CHST15Q7LFX5 561 aaPredicted RBP16.69■□□□□ 0.26
VIM-205ENST00000485947 SNX20Q7Z614 316 aa16.69■□□□□ 0.26
VIM-205ENST00000485947 B3GNT8Q7Z7M8 397 aa16.69■□□□□ 0.26
VIM-205ENST00000485947 SLC9B2Q86UD5 537 aa16.69■□□□□ 0.26
VIM-205ENST00000485947 ZC3HC1Q86WB0 502 aaKnown RBP16.69■□□□□ 0.26
VIM-205ENST00000485947 OR4D9Q8NGE8 314 aa16.69■□□□□ 0.26
VIM-205ENST00000485947 ZBTB9Q96C00 473 aa16.69■□□□□ 0.26
VIM-205ENST00000485947 TTC1Q99614 292 aa16.69■□□□□ 0.26
VIM-205ENST00000485947 IL26Q9NPH9 171 aa16.69■□□□□ 0.26
VIM-205ENST00000485947 OGFRQ9NZT2 677 aa16.69■□□□□ 0.26
VIM-205ENST00000485947 ATXN10Q9UBB4 475 aa16.69■□□□□ 0.26
VIM-205ENST00000485947 KALRNO60229 2985 aa16.69■□□□□ 0.26
VIM-205ENST00000485947 TRBV5-4A0A0C4DH59 114 aa16.68■□□□□ 0.26
VIM-205ENST00000485947 TRIM49D1C9J1S8 452 aa16.68■□□□□ 0.26
VIM-205ENST00000485947 GAPDHSO14556 408 aaPredicted RBP16.68■□□□□ 0.26
VIM-205ENST00000485947 KMOO15229 486 aa16.68■□□□□ 0.26
VIM-205ENST00000485947 PPM1DO15297 605 aa16.68■□□□□ 0.26
VIM-205ENST00000485947 PRAMEF1O95521 474 aa16.68■□□□□ 0.26
VIM-205ENST00000485947 AHSGP02765 367 aa16.68■□□□□ 0.26
VIM-205ENST00000485947 MT-ND3P03897 115 aa16.68■□□□□ 0.26
VIM-205ENST00000485947 JMJD7P0C870 316 aa16.68■□□□□ 0.26
VIM-205ENST00000485947 F3P13726 295 aa16.68■□□□□ 0.26
VIM-205ENST00000485947 CD82P27701 267 aa16.68■□□□□ 0.26
VIM-205ENST00000485947 ITPKBP27987 946 aa16.68■□□□□ 0.26
VIM-205ENST00000485947 CD1CP29017 333 aa16.68■□□□□ 0.26
VIM-205ENST00000485947 EPHA4P54764 986 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms