RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 AENQ8WTP8 325 aaKnown RBP6.84□□□□□ -1.31
LIMD1-204ENST00000474665 SCG3Q8WXD2 468 aaKnown RBP6.84□□□□□ -1.31
LIMD1-204ENST00000474665 TTC9Q92623 222 aa6.84□□□□□ -1.31
LIMD1-204ENST00000474665 TBRG4Q969Z0 631 aaKnown RBP eCLIP6.84□□□□□ -1.31
LIMD1-204ENST00000474665 RMDN2Q96LZ7 410 aa6.84□□□□□ -1.31
LIMD1-204ENST00000474665 TTC25Q96NG3 672 aa6.84□□□□□ -1.31
LIMD1-204ENST00000474665 NDNQ99608 321 aa6.84□□□□□ -1.31
LIMD1-204ENST00000474665 CCM2Q9BSQ5 444 aa6.84□□□□□ -1.31
LIMD1-204ENST00000474665 FAM167BQ9BTA0 163 aa6.84□□□□□ -1.31
LIMD1-204ENST00000474665 PARD6BQ9BYG5 372 aa6.84□□□□□ -1.31
LIMD1-204ENST00000474665 ZCCHC2Q9C0B9 1178 aaKnown RBP6.84□□□□□ -1.31
LIMD1-204ENST00000474665 COG4Q9H9E3 785 aa6.84□□□□□ -1.31
LIMD1-204ENST00000474665 CPNE5Q9HCH3 593 aa6.84□□□□□ -1.31
LIMD1-204ENST00000474665 WASH6PQ9NQA3 447 aa6.84□□□□□ -1.31
LIMD1-204ENST00000474665 INTS10Q9NVR2 710 aaKnown RBP6.84□□□□□ -1.31
LIMD1-204ENST00000474665 SIRPGQ9P1W8 387 aa6.84□□□□□ -1.31
LIMD1-204ENST00000474665 FAM8A1Q9UBU6 413 aa6.84□□□□□ -1.31
LIMD1-204ENST00000474665 MTRF1LQ9UGC7 380 aaKnown RBP6.84□□□□□ -1.31
LIMD1-204ENST00000474665 HEMK1Q9Y5R4 338 aaPredicted RBP6.84□□□□□ -1.31
LIMD1-204ENST00000474665 AK5Q9Y6K8 562 aa6.84□□□□□ -1.31
LIMD1-204ENST00000474665 FBN2P35556 2912 aa6.84□□□□□ -1.31
LIMD1-204ENST00000474665 UBA6A0AVT1 1052 aaPredicted RBP6.83□□□□□ -1.32
LIMD1-204ENST00000474665 NEMP2A6NFY4 417 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 B4DGG1 531 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 RIPK2O43353 540 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 SNX2O60749 519 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 SLCO2B1O94956 709 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 WISP3O95389 354 aaPredicted RBP6.83□□□□□ -1.32
LIMD1-204ENST00000474665 ESR1P03372 595 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 GSTA2P09210 222 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 TPBGLP0DKB5 382 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 RALBP11234 206 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 CKMT1AP12532 417 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 F3P13726 295 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 PKMP14618 531 aaKnown RBP6.83□□□□□ -1.32
LIMD1-204ENST00000474665 GCAP28676 217 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 GMPRP36959 345 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 SLC19A1P41440 591 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 ACADVLP49748 655 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 NFKB2Q00653 900 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 GTF2H3Q13889 308 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 SUZ12Q15022 739 aaKnown RBP6.83□□□□□ -1.32
LIMD1-204ENST00000474665 BRD3Q15059 726 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 SEPT7Q16181 437 aaKnown RBP6.83□□□□□ -1.32
LIMD1-204ENST00000474665 RPE65Q16518 533 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 PERM1Q5SV97 790 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 CHCHD2P9Q5T1J5 151 aaPredicted RBP6.83□□□□□ -1.32
LIMD1-204ENST00000474665 RNF187Q5TA31 235 aaPredicted RBP6.83□□□□□ -1.32
LIMD1-204ENST00000474665 AGAP9Q5VTM2 703 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 ZCCHC8Q6NZY4 707 aaKnown RBP6.83□□□□□ -1.32
LIMD1-204ENST00000474665 DUS1LQ6P1R4 473 aaKnown RBP6.83□□□□□ -1.32
LIMD1-204ENST00000474665 GUSBP11Q6P575 273 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 TMEM207Q6UWW9 146 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 ZNF438Q7Z4V0 828 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 STRA8Q7Z7C7 330 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 PIM3Q86V86 326 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 LRRC6Q86X45 466 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 RASGRP3Q8IV61 690 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 LMNTD2Q8IXW0 634 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 ARL10Q8N8L6 244 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 UHMK1Q8TAS1 419 aaKnown RBP6.83□□□□□ -1.32
LIMD1-204ENST00000474665 HM13Q8TCT9 377 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 CALML6Q8TD86 181 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 ZDHHC1Q8WTX9 485 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 UBXN4Q92575 508 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 CNDP2Q96KP4 475 aaKnown RBP6.83□□□□□ -1.32
LIMD1-204ENST00000474665 INSM2Q96T92 566 aaPredicted RBP6.83□□□□□ -1.32
LIMD1-204ENST00000474665 OLFM1Q99784 485 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 AARSD1Q9BTE6 412 aaKnown RBP6.83□□□□□ -1.32
LIMD1-204ENST00000474665 DUSP23Q9BVJ7 150 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 FAM117AQ9C073 453 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 DPEP2Q9H4A9 486 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 OSGEPL1Q9H4B0 414 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 ACSS3Q9H6R3 686 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 VPS37BQ9H9H4 285 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 PPANQ9NQ55 473 aaKnown RBP6.83□□□□□ -1.32
LIMD1-204ENST00000474665 LATS2Q9NRM7 1088 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 IKZF3Q9UKT9 509 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 RAB21Q9UL25 225 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 PSMD13Q9UNM6 376 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 MTO1Q9Y2Z2 717 aaKnown RBP6.83□□□□□ -1.32
LIMD1-204ENST00000474665 CFAP20Q9Y6A4 193 aaKnown RBP6.83□□□□□ -1.32
LIMD1-204ENST00000474665 RNF215Q9Y6U7 377 aa6.83□□□□□ -1.32
LIMD1-204ENST00000474665 MDC1Q14676 2089 aaKnown RBP6.82□□□□□ -1.32
LIMD1-204ENST00000474665 NBPF19A0A087WUL8 3843 aa6.82□□□□□ -1.32
LIMD1-204ENST00000474665 EME2A4GXA9 379 aaPredicted RBP6.82□□□□□ -1.32
LIMD1-204ENST00000474665 KRT87PA6NCN2 255 aa6.82□□□□□ -1.32
LIMD1-204ENST00000474665 QSOX1O00391 747 aa6.82□□□□□ -1.32
LIMD1-204ENST00000474665 B4GAT1O43505 415 aa6.82□□□□□ -1.32
LIMD1-204ENST00000474665 KCNJ13O60928 360 aa6.82□□□□□ -1.32
LIMD1-204ENST00000474665 TSPAN12O95859 305 aa6.82□□□□□ -1.32
LIMD1-204ENST00000474665 OR56A5P0C7T3 313 aa6.82□□□□□ -1.32
LIMD1-204ENST00000474665 CKMT2P17540 419 aa6.82□□□□□ -1.32
LIMD1-204ENST00000474665 XRCC1P18887 633 aaPredicted RBP6.82□□□□□ -1.32
LIMD1-204ENST00000474665 CD9P21926 228 aa6.82□□□□□ -1.32
LIMD1-204ENST00000474665 IDSP22304 550 aa6.82□□□□□ -1.32
LIMD1-204ENST00000474665 FDXRP22570 491 aa6.82□□□□□ -1.32
LIMD1-204ENST00000474665 ACP1P24666 158 aa6.82□□□□□ -1.32
LIMD1-204ENST00000474665 PPARGP37231 505 aaPredicted RBP6.82□□□□□ -1.32
LIMD1-204ENST00000474665 FASLGP48023 281 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms