RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 BTN3A1O00481 513 aa18.26■□□□□ 0.51
CCDC88B-206ENST00000473405 CPNE3O75131 537 aaKnown RBP18.26■□□□□ 0.51
CCDC88B-206ENST00000473405 SCRG1O75711 98 aa18.26■□□□□ 0.51
CCDC88B-206ENST00000473405 RECKO95980 971 aa18.26■□□□□ 0.51
CCDC88B-206ENST00000473405 CASRP41180 1078 aa18.26■□□□□ 0.51
CCDC88B-206ENST00000473405 RPS18P62269 152 aaKnown RBP18.26■□□□□ 0.51
CCDC88B-206ENST00000473405 CACNG1Q06432 222 aa18.26■□□□□ 0.51
CCDC88B-206ENST00000473405 KRT33BQ14525 404 aa18.26■□□□□ 0.51
CCDC88B-206ENST00000473405 LACTB2Q53H82 288 aaPredicted RBP18.26■□□□□ 0.51
CCDC88B-206ENST00000473405 ZNF517Q6ZMY9 492 aaPredicted RBP18.26■□□□□ 0.51
CCDC88B-206ENST00000473405 TAS2R42Q7RTR8 314 aa18.26■□□□□ 0.51
CCDC88B-206ENST00000473405 TMEM126BQ8IUX1 230 aa18.26■□□□□ 0.51
CCDC88B-206ENST00000473405 OR8K5Q8NH50 307 aa18.26■□□□□ 0.51
CCDC88B-206ENST00000473405 STYXQ8WUJ0 223 aa18.26■□□□□ 0.51
CCDC88B-206ENST00000473405 LCN9Q8WX39 176 aa18.26■□□□□ 0.51
CCDC88B-206ENST00000473405 TLR10Q9BXR5 811 aa18.26■□□□□ 0.51
CCDC88B-206ENST00000473405 PITPNM3Q9BZ71 974 aa18.26■□□□□ 0.51
CCDC88B-206ENST00000473405 TWSG1Q9GZX9 223 aa18.26■□□□□ 0.51
CCDC88B-206ENST00000473405 SRMSQ9H3Y6 488 aa18.26■□□□□ 0.51
CCDC88B-206ENST00000473405 VPS37BQ9H9H4 285 aa18.26■□□□□ 0.51
CCDC88B-206ENST00000473405 KCND1Q9NSA2 647 aa18.26■□□□□ 0.51
CCDC88B-206ENST00000473405 SOHLH2Q9NX45 425 aa18.26■□□□□ 0.51
CCDC88B-206ENST00000473405 TP53TG5Q9Y2B4 290 aa18.26■□□□□ 0.51
CCDC88B-206ENST00000473405 MED13Q9UHV7 2174 aa18.25■□□□□ 0.51
CCDC88B-206ENST00000473405 PIPSLA2A3N6 862 aa18.25■□□□□ 0.51
CCDC88B-206ENST00000473405 CCDC78A2IDD5 438 aa18.25■□□□□ 0.51
CCDC88B-206ENST00000473405 OR51F1A6NGY5 319 aa18.25■□□□□ 0.51
CCDC88B-206ENST00000473405 SLC9B1P1A6NJY1 282 aa18.25■□□□□ 0.51
CCDC88B-206ENST00000473405 K7EM74 188 aa18.25■□□□□ 0.51
CCDC88B-206ENST00000473405 MATN2O00339 956 aa18.25■□□□□ 0.51
CCDC88B-206ENST00000473405 BTN3A3O00478 584 aa18.25■□□□□ 0.51
CCDC88B-206ENST00000473405 NR1D1P20393 614 aa18.25■□□□□ 0.51
CCDC88B-206ENST00000473405 CD151P48509 253 aa18.25■□□□□ 0.51
CCDC88B-206ENST00000473405 PMS2P54278 862 aa18.25■□□□□ 0.51
CCDC88B-206ENST00000473405 ABRQ12979 859 aa18.25■□□□□ 0.51
CCDC88B-206ENST00000473405 PRKAA1Q13131 559 aa18.25■□□□□ 0.51
CCDC88B-206ENST00000473405 RPA4Q13156 261 aa18.25■□□□□ 0.51
CCDC88B-206ENST00000473405 GPS2Q13227 327 aa18.25■□□□□ 0.51
CCDC88B-206ENST00000473405 BOP1Q14137 746 aaKnown RBP18.25■□□□□ 0.51
CCDC88B-206ENST00000473405 OASLQ15646 514 aaKnown RBP18.25■□□□□ 0.51
CCDC88B-206ENST00000473405 PRAMEF17Q5VTA0 474 aa18.25■□□□□ 0.51
CCDC88B-206ENST00000473405 OR52E1Q8NGJ3 308 aa18.25■□□□□ 0.51
CCDC88B-206ENST00000473405 FERD3LQ96RJ6 166 aa18.25■□□□□ 0.51
CCDC88B-206ENST00000473405 HGH1Q9BTY7 390 aa18.25■□□□□ 0.51
CCDC88B-206ENST00000473405 GPR87Q9BY21 358 aa18.25■□□□□ 0.51
CCDC88B-206ENST00000473405 TFB2MQ9H5Q4 396 aaKnown RBP18.25■□□□□ 0.51
CCDC88B-206ENST00000473405 LATS2Q9NRM7 1088 aa18.25■□□□□ 0.51
CCDC88B-206ENST00000473405 C1GALT1Q9NS00 363 aa18.25■□□□□ 0.51
CCDC88B-206ENST00000473405 ANAPC2Q9UJX6 822 aa18.25■□□□□ 0.51
CCDC88B-206ENST00000473405 PRSS21Q9Y6M0 314 aa18.25■□□□□ 0.51
CCDC88B-206ENST00000473405 DOPEY2Q9Y3R5 2298 aa18.25■□□□□ 0.51
CCDC88B-206ENST00000473405 SPTAN1Q13813 2472 aaKnown RBP18.25■□□□□ 0.51
CCDC88B-206ENST00000473405 RP1L1Q8IWN7 2480 aaPredicted RBP18.24■□□□□ 0.51
CCDC88B-206ENST00000473405 GSAPA4D1B5 854 aa18.24■□□□□ 0.51
CCDC88B-206ENST00000473405 IFRD1O00458 451 aaPredicted RBP18.24■□□□□ 0.51
CCDC88B-206ENST00000473405 ST6GAL1P15907 406 aa18.24■□□□□ 0.51
CCDC88B-206ENST00000473405 CDH3P22223 829 aa18.24■□□□□ 0.51
CCDC88B-206ENST00000473405 MSNP26038 577 aaKnown RBP18.24■□□□□ 0.51
CCDC88B-206ENST00000473405 PTPN4P29074 926 aa18.24■□□□□ 0.51
CCDC88B-206ENST00000473405 PRDX3P30048 256 aaKnown RBP18.24■□□□□ 0.51
CCDC88B-206ENST00000473405 FOXN2P32314 431 aa18.24■□□□□ 0.51
CCDC88B-206ENST00000473405 IL10RAQ13651 578 aa18.24■□□□□ 0.51
CCDC88B-206ENST00000473405 UGT8Q16880 541 aa18.24■□□□□ 0.51
CCDC88B-206ENST00000473405 CCDC38Q502W7 563 aa18.24■□□□□ 0.51
CCDC88B-206ENST00000473405 ZNF789Q5FWF6 425 aa18.24■□□□□ 0.51
CCDC88B-206ENST00000473405 TMTC4Q5T4D3 741 aa18.24■□□□□ 0.51
CCDC88B-206ENST00000473405 PACS1Q6VY07 963 aa18.24■□□□□ 0.51
CCDC88B-206ENST00000473405 TXLNBQ8N3L3 684 aa18.24■□□□□ 0.51
CCDC88B-206ENST00000473405 PHC3Q8NDX5 983 aa18.24■□□□□ 0.51
CCDC88B-206ENST00000473405 OR52K1Q8NGK4 314 aa18.24■□□□□ 0.51
CCDC88B-206ENST00000473405 OR13J1Q8NGT2 312 aa18.24■□□□□ 0.51
CCDC88B-206ENST00000473405 MVB12BQ9H7P6 319 aa18.24■□□□□ 0.51
CCDC88B-206ENST00000473405 IMPACTQ9P2X3 320 aa18.24■□□□□ 0.51
CCDC88B-206ENST00000473405 SEC16AO15027 2179 aa18.24■□□□□ 0.51
CCDC88B-206ENST00000473405 CCDC162PA2VCL2 907 aa18.23■□□□□ 0.51
CCDC88B-206ENST00000473405 PSMD3O43242 534 aa18.23■□□□□ 0.51
CCDC88B-206ENST00000473405 LIASO43766 372 aa18.23■□□□□ 0.51
CCDC88B-206ENST00000473405 RFPL1O75677 317 aa18.23■□□□□ 0.51
CCDC88B-206ENST00000473405 AP2A2O94973 939 aa18.23■□□□□ 0.51
CCDC88B-206ENST00000473405 GSTM1P09488 218 aa18.23■□□□□ 0.51
CCDC88B-206ENST00000473405 MSL3P1P0C860 447 aa18.23■□□□□ 0.51
CCDC88B-206ENST00000473405 CDC25BP30305 580 aa18.23■□□□□ 0.51
CCDC88B-206ENST00000473405 NSG1P42857 185 aa18.23■□□□□ 0.51
CCDC88B-206ENST00000473405 GSTM4Q03013 218 aa18.23■□□□□ 0.51
CCDC88B-206ENST00000473405 COLEC12Q5KU26 742 aa18.23■□□□□ 0.51
CCDC88B-206ENST00000473405 LINC00523Q86TU6 105 aa18.23■□□□□ 0.51
CCDC88B-206ENST00000473405 APLFQ8IW19 511 aaPredicted RBP18.23■□□□□ 0.51
CCDC88B-206ENST00000473405 ADGRF3Q8IZF5 1079 aa18.23■□□□□ 0.51
CCDC88B-206ENST00000473405 OR1L3Q8NH93 324 aa18.23■□□□□ 0.51
CCDC88B-206ENST00000473405 TFGQ92734 400 aaPredicted RBP18.23■□□□□ 0.51
CCDC88B-206ENST00000473405 XKR8Q9H6D3 395 aa18.23■□□□□ 0.51
CCDC88B-206ENST00000473405 SMARCAL1Q9NZC9 954 aa18.23■□□□□ 0.51
CCDC88B-206ENST00000473405 ICKQ9UPZ9 632 aa18.23■□□□□ 0.51
CCDC88B-206ENST00000473405 MAN2B2Q9Y2E5 1009 aa18.23■□□□□ 0.51
CCDC88B-206ENST00000473405 PCSK5Q92824 1860 aa18.22■□□□□ 0.51
CCDC88B-206ENST00000473405 ERI2A8K979 691 aaKnown RBP18.22■□□□□ 0.51
CCDC88B-206ENST00000473405 MKRN2OSH3BPM6 223 aa18.22■□□□□ 0.51
CCDC88B-206ENST00000473405 DNAJB5O75953 348 aa18.22■□□□□ 0.51
CCDC88B-206ENST00000473405 RORAP35398 523 aa18.22■□□□□ 0.51
CCDC88B-206ENST00000473405 FOXK1P85037 733 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms