RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 THADAQ6YHU6 1953 aa12.56□□□□□ -0.4
VPS13D-205ENST00000473099 NCF1BA6NI72 391 aaPredicted RBP12.55□□□□□ -0.4
VPS13D-205ENST00000473099 NCF1CA8MVU1 366 aaPredicted RBP12.55□□□□□ -0.4
VPS13D-205ENST00000473099 MATN2O00339 956 aa12.55□□□□□ -0.4
VPS13D-205ENST00000473099 SLC31A1O15431 190 aa12.55□□□□□ -0.4
VPS13D-205ENST00000473099 GRID2O43424 1007 aa12.55□□□□□ -0.4
VPS13D-205ENST00000473099 RPN2P04844 631 aa12.55□□□□□ -0.4
VPS13D-205ENST00000473099 FGF4P08620 206 aa12.55□□□□□ -0.4
VPS13D-205ENST00000473099 NCF1P14598 390 aaPredicted RBP12.55□□□□□ -0.4
VPS13D-205ENST00000473099 MPSTP25325 297 aa12.55□□□□□ -0.4
VPS13D-205ENST00000473099 HTR1BP28222 390 aa12.55□□□□□ -0.4
VPS13D-205ENST00000473099 PBLDP30039 288 aaPredicted RBP12.55□□□□□ -0.4
VPS13D-205ENST00000473099 CD6P30203 668 aa12.55□□□□□ -0.4
VPS13D-205ENST00000473099 MAT2AP31153 395 aaKnown RBP12.55□□□□□ -0.4
VPS13D-205ENST00000473099 ARRB2P32121 409 aa12.55□□□□□ -0.4
VPS13D-205ENST00000473099 GGT5P36269 586 aa12.55□□□□□ -0.4
VPS13D-205ENST00000473099 PKNOX1P55347 436 aa12.55□□□□□ -0.4
VPS13D-205ENST00000473099 CLCQ05315 142 aa12.55□□□□□ -0.4
VPS13D-205ENST00000473099 DMPKQ09013 629 aa12.55□□□□□ -0.4
VPS13D-205ENST00000473099 CDC16Q13042 620 aa12.55□□□□□ -0.4
VPS13D-205ENST00000473099 IFT88Q13099 833 aa12.55□□□□□ -0.4
VPS13D-205ENST00000473099 KIAA0895LQ68EN5 471 aa12.55□□□□□ -0.4
VPS13D-205ENST00000473099 ANO7Q6IWH7 933 aa12.55□□□□□ -0.4
VPS13D-205ENST00000473099 CCDC121Q6ZUS5 278 aa12.55□□□□□ -0.4
VPS13D-205ENST00000473099 CUZD1Q86UP6 607 aa12.55□□□□□ -0.4
VPS13D-205ENST00000473099 ZNF547Q8IVP9 402 aa12.55□□□□□ -0.4
VPS13D-205ENST00000473099 CFAP206Q8IYR0 622 aa12.55□□□□□ -0.4
VPS13D-205ENST00000473099 MAGEC3Q8TD91 643 aa12.55□□□□□ -0.4
VPS13D-205ENST00000473099 RHBDF1Q96CC6 855 aa12.55□□□□□ -0.4
VPS13D-205ENST00000473099 THOC1Q96FV9 657 aaKnown RBP12.55□□□□□ -0.4
VPS13D-205ENST00000473099 KCNK13Q9HB14 408 aa12.55□□□□□ -0.4
VPS13D-205ENST00000473099 MRGBPQ9NV56 204 aa12.55□□□□□ -0.4
VPS13D-205ENST00000473099 PNPOQ9NVS9 261 aa12.55□□□□□ -0.4
VPS13D-205ENST00000473099 ARL15Q9NXU5 204 aa12.55□□□□□ -0.4
VPS13D-205ENST00000473099 UTP6Q9NYH9 597 aaKnown RBP12.55□□□□□ -0.4
VPS13D-205ENST00000473099 TSR3Q9UJK0 312 aaKnown RBP12.55□□□□□ -0.4
VPS13D-205ENST00000473099 PCTPQ9UKL6 214 aa12.55□□□□□ -0.4
VPS13D-205ENST00000473099 ADAMTS6Q9UKP5 1117 aa12.55□□□□□ -0.4
VPS13D-205ENST00000473099 ACSL5Q9ULC5 683 aa12.55□□□□□ -0.4
VPS13D-205ENST00000473099 PDE10AQ9Y233 779 aa12.55□□□□□ -0.4
VPS13D-205ENST00000473099 SPAG17Q6Q759 2223 aa12.55□□□□□ -0.4
VPS13D-205ENST00000473099 TMEM202A6NGA9 273 aa12.54□□□□□ -0.4
VPS13D-205ENST00000473099 PRAMEF26H0Y7S4 382 aa12.54□□□□□ -0.4
VPS13D-205ENST00000473099 CCDC22O60826 627 aa12.54□□□□□ -0.4
VPS13D-205ENST00000473099 KATNA1O75449 491 aa12.54□□□□□ -0.4
VPS13D-205ENST00000473099 SIX3O95343 332 aaPredicted RBP12.54□□□□□ -0.4
VPS13D-205ENST00000473099 GAS6Q14393 721 aa12.54□□□□□ -0.4
VPS13D-205ENST00000473099 PHKG1Q16816 387 aa12.54□□□□□ -0.4
VPS13D-205ENST00000473099 SH2D4BQ5SQS7 431 aa12.54□□□□□ -0.4
VPS13D-205ENST00000473099 DOK6Q6PKX4 331 aa12.54□□□□□ -0.4
VPS13D-205ENST00000473099 CRTC3Q6UUV7 619 aa12.54□□□□□ -0.4
VPS13D-205ENST00000473099 UNC5DQ6UXZ4 953 aa12.54□□□□□ -0.4
VPS13D-205ENST00000473099 LRRC70Q7Z2Q7 622 aa12.54□□□□□ -0.4
VPS13D-205ENST00000473099 C11orf96Q7Z7L8 435 aa12.54□□□□□ -0.4
VPS13D-205ENST00000473099 GALNT13Q8IUC8 556 aa12.54□□□□□ -0.4
VPS13D-205ENST00000473099 VRK3Q8IV63 474 aa12.54□□□□□ -0.4
VPS13D-205ENST00000473099 SPNS2Q8IVW8 549 aa12.54□□□□□ -0.4
VPS13D-205ENST00000473099 CLYBLQ8N0X4 340 aa12.54□□□□□ -0.4
VPS13D-205ENST00000473099 TOE1Q96GM8 510 aaKnown RBP12.54□□□□□ -0.4
VPS13D-205ENST00000473099 SCARF2Q96GP6 870 aaPredicted RBP12.54□□□□□ -0.4
VPS13D-205ENST00000473099 MAGEB10Q96LZ2 347 aaPredicted RBP12.54□□□□□ -0.4
VPS13D-205ENST00000473099 CCDC138Q96M89 665 aa12.54□□□□□ -0.4
VPS13D-205ENST00000473099 RILPQ96NA2 401 aa12.54□□□□□ -0.4
VPS13D-205ENST00000473099 ZNF382Q96SR6 550 aa12.54□□□□□ -0.4
VPS13D-205ENST00000473099 HGH1Q9BTY7 390 aa12.54□□□□□ -0.4
VPS13D-205ENST00000473099 LGR4Q9BXB1 951 aa12.54□□□□□ -0.4
VPS13D-205ENST00000473099 CD244Q9BZW8 370 aa12.54□□□□□ -0.4
VPS13D-205ENST00000473099 FOXQ1Q9C009 403 aa12.54□□□□□ -0.4
VPS13D-205ENST00000473099 WSB2Q9NYS7 404 aaPredicted RBP12.54□□□□□ -0.4
VPS13D-205ENST00000473099 OPTCQ9UBM4 332 aa12.54□□□□□ -0.4
VPS13D-205ENST00000473099 ZDHHC2Q9UIJ5 367 aa12.54□□□□□ -0.4
VPS13D-205ENST00000473099 CYP8B1Q9UNU6 501 aa12.54□□□□□ -0.4
VPS13D-205ENST00000473099 TMEM98Q9Y2Y6 226 aa12.54□□□□□ -0.4
VPS13D-205ENST00000473099 OR1A2Q9Y585 309 aa12.54□□□□□ -0.4
VPS13D-205ENST00000473099 HEATR5BQ9P2D3 2071 aa12.53□□□□□ -0.4
VPS13D-205ENST00000473099 K7EPI3 171 aa12.53□□□□□ -0.4
VPS13D-205ENST00000473099 STK25O00506 426 aa12.53□□□□□ -0.4
VPS13D-205ENST00000473099 E2F3O00716 465 aa12.53□□□□□ -0.4
VPS13D-205ENST00000473099 TNFRSF10CO14798 259 aa12.53□□□□□ -0.4
VPS13D-205ENST00000473099 STK16O75716 305 aa12.53□□□□□ -0.4
VPS13D-205ENST00000473099 GUCA1CO95843 209 aa12.53□□□□□ -0.4
VPS13D-205ENST00000473099 CHEK2O96017 543 aa12.53□□□□□ -0.4
VPS13D-205ENST00000473099 OTCP00480 354 aa12.53□□□□□ -0.4
VPS13D-205ENST00000473099 RABIFP47224 123 aa12.53□□□□□ -0.4
VPS13D-205ENST00000473099 PREPP48147 710 aa12.53□□□□□ -0.4
VPS13D-205ENST00000473099 GTF2H2Q13888 395 aa12.53□□□□□ -0.4
VPS13D-205ENST00000473099 NFATC4Q14934 902 aa12.53□□□□□ -0.4
VPS13D-205ENST00000473099 TBCCQ15814 346 aa12.53□□□□□ -0.4
VPS13D-205ENST00000473099 METTL21CQ5VZV1 264 aa12.53□□□□□ -0.4
VPS13D-205ENST00000473099 METRNLQ641Q3 311 aa12.53□□□□□ -0.4
VPS13D-205ENST00000473099 GTF2H2CQ6P1K8 395 aa12.53□□□□□ -0.4
VPS13D-205ENST00000473099 EPGNQ6UW88 154 aa12.53□□□□□ -0.4
VPS13D-205ENST00000473099 ACAD11Q709F0 780 aa12.53□□□□□ -0.4
VPS13D-205ENST00000473099 PDZD3Q86UT5 571 aa12.53□□□□□ -0.4
VPS13D-205ENST00000473099 PHC3Q8NDX5 983 aa12.53□□□□□ -0.4
VPS13D-205ENST00000473099 AGAP11Q8TF27 550 aa12.53□□□□□ -0.4
VPS13D-205ENST00000473099 DLG3Q92796 817 aa12.53□□□□□ -0.4
VPS13D-205ENST00000473099 FBXL8Q96CD0 374 aa12.53□□□□□ -0.4
VPS13D-205ENST00000473099 RMDN2Q96LZ7 410 aa12.53□□□□□ -0.4
VPS13D-205ENST00000473099 WDR92Q96MX6 357 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms