RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 PI4KBQ9UBF8 816 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 MYOTQ9UBF9 498 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 NXF1Q9UBU9 619 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 EBF1Q9UH73 591 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 CDH9Q9ULB4 789 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 RUVBL2Q9Y230 463 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 PLLPQ9Y342 182 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 SPACA6W5XKT8 324 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 MN1Q10571 1320 aaPredicted RBP4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 FAM170BA6NMN3 283 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 TCP11X1B4DZS4 312 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 H7C1Q1 480 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 AIM2O14862 343 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 EIF3DO15371 548 aaKnown RBP eCLIP4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 AKR7A2O43488 359 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 CCNB2O95067 398 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 CSH1P0DML2 217 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 CSH2P0DML3 217 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 ACADSP16219 412 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 AOAHP28039 575 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 PCK1P35558 622 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 EIF2S3P41091 472 aaKnown RBP4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 IL12RB1P42701 662 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 CSNK1DP48730 415 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 CDC34P49427 236 aaPredicted RBP4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 RASSF2P50749 326 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 ZNF41P51814 821 aaPredicted RBP4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 EPHA5P54756 1037 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 HTRA4P83105 476 aaPredicted RBP4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 MC1RQ01726 317 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 EGR3Q06889 387 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 DGKDQ16760 1214 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 TMEM119Q4V9L6 283 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 LRRC24Q50LG9 513 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 TEX30Q5JUR7 227 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 PDSS1Q5T2R2 415 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 FAM109BQ6ICB4 259 aaPredicted RBP4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 PAGE2Q7Z2X7 111 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 PPP1R3BQ86XI6 285 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 HIPK1Q86Z02 1210 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 TMC8Q8IU68 726 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 CNTN4Q8IWV2 1026 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 NAGSQ8N159 534 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 RASGEF1CQ8N431 466 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 MB21D1Q8N884 522 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 KBTBD3Q8NAB2 608 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 SLC37A3Q8NCC5 494 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 NCOA7Q8NI08 942 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 PROX1Q92786 737 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 NTAN1Q96AB6 310 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 SLC25A36Q96CQ1 311 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 MCRS1Q96EZ8 462 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 LRRC46Q96FV0 321 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 ELMO2Q96JJ3 720 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 ADI1Q9BV57 179 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 CNPPD1Q9BV87 410 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 GON7Q9BXV9 100 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 PCED1AQ9H1Q7 454 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 MOV10Q9HCE1 1003 aaKnown RBP4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 ZC4H2Q9NQZ6 224 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 WARS2Q9UGM6 360 aaKnown RBP4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 MAGEL2Q9UJ55 1249 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 ENPP5Q9UJA9 477 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 MED23Q9ULK4 1368 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 PNMA6EA0A0J9YXQ4 647 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 SLC15A5A6NIM6 579 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 YDJCA8MPS7 323 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 F8VP50 259 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 O00370 1275 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 CCRL2O00421 344 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 NFIBO00712 420 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 SEC14L5O43304 696 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 DENRO43583 198 aaKnown RBP4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 PFKFB2O60825 505 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 TRIM3O75382 744 aaPredicted RBP4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 MBD3O95983 291 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 THP07101 528 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 FAM228BP0C875 321 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 TCP1P17987 556 aaKnown RBP4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 EN2P19622 333 aaPredicted RBP4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 SERPINF1P36955 418 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 NNMTP40261 264 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 SLC1A4P43007 532 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 PTDSS1P48651 473 aaKnown RBP4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 PIK3CGP48736 1102 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 CLCNKBP51801 687 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 SUCLG1P53597 346 aaKnown RBP4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 PSMD4P55036 377 aaKnown RBP4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 VAMP2P63027 116 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 IFITM2Q01629 132 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 GHRHRQ02643 423 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 GUCY2DQ02846 1103 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 TLE2Q04725 743 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 LCP2Q13094 533 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 GPS1Q13098 491 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 STX5Q13190 355 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 SLAQ13239 276 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 EPC2Q52LR7 807 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 MROH9Q5TGP6 573 aa4.73□□□□□ -1.65
CCDC88A-209ENST00000456975 C1orf94Q6P1W5 598 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms